
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227379/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD/1971864/1.GDAC_clinicalDataPicker.Finished/LUAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=LUAD"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=294, in cluster file=356, common to both=288
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 288
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               38               250 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               38               250 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              112               176 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              112               176 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               252 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               252 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               258 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               258 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                9               279 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                9               279 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               18               270 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               18               270 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               21               267 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               21               267 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                8               280 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                8               280 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              113               175 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              113               175 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               37               251 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               37               251 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               39               249 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               39               249 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                9               279 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                9               279 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               99               189 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               99               189 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               70               218 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               70               218 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               33               255 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               33               255 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               91               197 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               91               197 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                5               283 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                5               283 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3               285 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3               285 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                31                257 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                31                257 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                18                270 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                18                270 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                23                265 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                23                265 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                33                255 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                33                255 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                38                250 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                38                250 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                31                257 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                31                257 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                273 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                273 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                32                256 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                32                256 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                10                278 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                10                278 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                38                250 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                38                250 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                26                262 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                26                262 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                17                271 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                17                271 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                48                240 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                48                240 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                20                268 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                20                268 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                15                273 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                15                273 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                284 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                284 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                11                277 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                11                277 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                40                248 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                40                248 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                47                241 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                47                241 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                26                262 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                26                262 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                14                274 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                14                274 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               11               277 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               11               277 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               21               267 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               21               267 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9               279 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9               279 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                3               285 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                3               285 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               232 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               232 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               30               258 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               30               258 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               26               262 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               26               262 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               31               257 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               31               257 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8               280 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8               280 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               39               249 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               39               249 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               23               265 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               23               265 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               63               225 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               63               225 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               10               278 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               10               278 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               11               277 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               11               277 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               75               213 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               75               213 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               278 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               278 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               90               198 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               90               198 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               75               213 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               75               213 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                265 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                265 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                263 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                263 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                22                266 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                22                266 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                16                272 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                16                272 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                25                263 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                25                263 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                18                270 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                18                270 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                66                222 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                66                222 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                29                259 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                29                259 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                64                224 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                64                224 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                24                264 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                24                264 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                42                246 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                42                246 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                73                215 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                73                215 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                11                277 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                11                277 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                46                242 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                46                242 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                74                214 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                74                214 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                79                209 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                79                209 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                44                244 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                44                244 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                43                245 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                43                245 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                15                273 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                15                273 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                42                246 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                42                246 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                65                223 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                65                223 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               282 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               282 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NEOADJUVANTTHERAPY"                    
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 288 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
         863         1073          354         1357          158           NA 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
         574          581          400          529          103          480 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
         400           97          246          311          253          196 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
         189          140          106          498          208            9 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
         102          302          236           95          165           82 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
        1938           NA         1110           NA          298          162 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
         153           50          557           NA          531          535 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
         418         2318           NA           NA           NA         1081 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
        1421          428          999          268          896           NA 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
        1314          457          369          395          150            1 
TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
          NA           NA         2174         1485          455          785 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
         297         1499          245          282          267         1091 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        2369          653          257          460          285          135 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
         373          349           NA           NA           NA           NA 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
          NA           NA         1015           NA          255         1068 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
         970          418          701         1178         1479         1374 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
          87            2          992           24           NA         1238 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
          NA           28         1475           NA           NA           NA 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
          67           NA           NA         1826           NA         1233 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7570 TCGA-55-7573 
        2161         1170           18           34           NA            4 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
          95           40           39           31           24           54 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
          19           16          197           21            3         1728 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
         628         1189         1685         1126           NA         2550 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
           3          926          507         1202          223           30 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 
          60           18           62           18           NA           27 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
          21          422          154          186          690          414 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
         129           61         1599          711          911          617 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 
         467           14           40          122           38           NA 
TCGA-75-5125 TCGA-75-5126 TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6206 TCGA-75-6207 TCGA-75-6211 TCGA-75-6212 TCGA-75-6214 TCGA-75-7025 
          NA           NA           NA           NA           NA           NA 
TCGA-75-7027 TCGA-75-7030 TCGA-75-7031 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
          NA           NA         1093           NA         1201          760 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
          NA           NA           NA           NA         1220          678 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
         214           NA         6812           NA           NA           NA 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
          NA           NA           NA          327          881           NA 
TCGA-78-7633 TCGA-80-5607 TCGA-80-5608 TCGA-80-5611 TCGA-83-5908 TCGA-86-6562 
         994           NA           NA           NA          420           NA 
TCGA-86-6851 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7714 TCGA-91-6828 
          NA           11           27            7           NA           37 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
          NA            1           39           35           11           NA 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
         819          127           28           31          297          127 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
          34            2          163          963         1435         1476 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        1331          263          181           NA           22          250 
Variable 1:'AGE':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=80,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=177,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
149  61  57  16 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 288 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=47, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 80 169  22  16 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 80 169  22  16 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 80 169  22  16 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 80 169  22  16 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
172  58  51   1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
  172    58    52 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
172  58  51   1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
  172    58    52 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
149  61  57  16 
[1] "table(vv)"
vv
  I  II III  IV 
149  61  57  16 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
149  61  57  16 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
149  61  57  16 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    24  11
  1P GAIN WILD-TYPE 149  70
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               35               219 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11                70 
$`1P GAIN MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4632 
       29.95        30.02        25.02         4.96         0.99        44.61 
TCGA-44-2655 TCGA-44-2659 TCGA-44-6775 TCGA-44-6779 TCGA-44-7662 TCGA-44-7669 
       18.87        17.39         2.70        16.41         1.64        18.87 
TCGA-44-7672 TCGA-49-4501 TCGA-50-5944 TCGA-50-6591 TCGA-55-1592 TCGA-55-6980 
       13.74        46.72        12.26         3.88        23.05         2.20 
TCGA-55-6983 TCGA-55-7281 TCGA-55-7573 TCGA-64-1676 TCGA-64-1681 TCGA-67-6217 
       60.03         0.59         0.13        56.81        44.38        13.87 
TCGA-71-6725 TCGA-73-4668 TCGA-73-4676 TCGA-78-7145 TCGA-78-7147 TCGA-78-7155 
        2.01        15.35         4.01        27.16        19.27        38.50 
TCGA-78-7161 TCGA-78-7535 TCGA-78-7633 TCGA-91-6847 TCGA-95-7039 
        7.04        31.20        32.68        26.93         1.12 

$`1P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
        8.98        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         2.96         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64         5.19        26.30        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 
        5.42        63.72        32.45        36.49         9.80         5.33 
TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-49-4486 TCGA-49-4487 
        5.03        18.31        17.46        17.59        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
        4.44        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       13.74        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 
       48.49         3.88         5.46         7.76        45.34        32.71 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 
       24.99        40.54        71.05        38.47         1.12         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 
        0.53         6.48         0.69         0.10        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       55.40        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.61         4.24        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 
        0.46         1.32         1.25       163.10         5.65        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
       35.93        21.86        39.48        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        40.11        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        26.53         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       10.55        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
       41.33         0.03         1.28         1.15         0.36         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 
        0.92         1.02         9.76         4.18         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.13              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            60.03            223.96 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            17.39             12.16 
[1] "0.1 - 60.0 (17.4)"  "0.0 - 224.0 (12.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     20   18
  1P GAIN WILD-TYPE  136  114
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              20               136
  MALE                18               114
D1V4, continuous
D1V5, multiclass
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1              12                68
  T2              21               148
  T3               4                18
  T4               1                15
D1V7, multiclass
       clus
vv      1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0                 24               148
  N1                 13                45
  N2+N3               1                51
D1V8, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              26               176
  M1               3                13
  MX               8                55
D1V9, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  I                19               130
  II               14                47
  III               1                56
  IV                3                13
D1V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      1   37
  1P GAIN WILD-TYPE   18  232
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                1                18
  YES              37               232
D1V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      5   33
  1P GAIN WILD-TYPE   39  211
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                5                39
  YES              33               211

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    72  29
  1Q GAIN WILD-TYPE 101  52
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              101               153 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               29                52 
$`1Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4415 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
       38.07        14.01         2.96        30.02        25.02        25.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4625 TCGA-38-4629 
        4.96         0.99         2.04         0.46        47.61        28.37 
TCGA-38-4632 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2665 
       44.61        26.30        18.87        19.10        17.39        13.15 
TCGA-44-2668 TCGA-44-5645 TCGA-44-6147 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        8.09         6.84         7.76         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7662 TCGA-44-7669 TCGA-44-7671 
       36.49        16.41         9.80         1.64        18.87        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 TCGA-49-6742 
       13.74        76.21        28.57        46.72        32.84        15.02 
TCGA-49-6743 TCGA-50-5051 TCGA-50-5931 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       12.13        14.96         8.78        12.26        11.47         3.88 
TCGA-53-7813 TCGA-55-1592 TCGA-55-6642 TCGA-55-6970 TCGA-55-6972 TCGA-55-6980 
       13.74        23.05        32.61        15.25        48.49         2.20 
TCGA-55-6983 TCGA-55-6984 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       60.03        24.99         0.59         1.12         0.13         3.12 
TCGA-55-7725 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.28         1.78         0.62         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1680 TCGA-64-1681 TCGA-67-3771 TCGA-67-3774 TCGA-67-6215 
       56.81        37.02        44.38         1.97         0.59         0.89 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
       13.87         5.06        13.61         4.24         2.01        52.57 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7156 
       27.16        19.27        35.93        21.86        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 
        5.88        40.11         7.04        88.11        31.20        53.33 
TCGA-78-7539 TCGA-78-7633 TCGA-91-6828 TCGA-91-6847 TCGA-91-6849 TCGA-95-7039 
       10.75        32.68         1.22        26.93         0.92         1.12 
TCGA-95-7567 TCGA-97-7547 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        5.36        47.18         8.65         5.95         0.59 

$`1Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
        8.02        20.05        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-35-4122 
       26.01        24.00        15.02         1.02         2.96         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 
        5.95         8.68        85.32        37.71        49.02        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 
       11.64         5.19        13.15         3.39        15.78         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
       16.37         0.30         3.35         9.93         3.12         5.42 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-49-4487 TCGA-49-4490 
        5.33         5.03        18.31        17.46        28.11        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       35.54        14.07         8.81        29.46        29.75        43.20 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1595 
        0.72         8.38        35.11        31.89        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       45.17         2.86         0.07         0.79        42.48        40.70 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 
        0.92         3.88         5.46         7.76        45.34        32.71 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7576 TCGA-55-7727 TCGA-55-7728 
       40.54        71.05        38.47         1.32         1.02         0.79 
TCGA-55-7907 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 
        0.53        20.65        39.09        55.40        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-73-4659 TCGA-73-4666 
        2.04         0.69         6.12        22.68        23.38        20.28 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
      163.10         5.65        20.58        39.48        24.99        19.50 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 
       22.29       104.15       223.96         8.48        26.53         8.02 
TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        13.81         0.36         0.89         0.23 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
       41.33         0.03         1.28         1.15         0.36         4.18 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-97-7546 TCGA-97-7552 
        1.02         9.76         4.18         0.07        31.66        48.53 
TCGA-97-7553 TCGA-97-7941 TCGA-99-7458 
       43.76         0.72         8.22 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.10              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            88.11            223.96 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            13.74             12.66 
[1] "0.1 - 88.1 (13.7)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     58   54
  1Q GAIN WILD-TYPE   98   78
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              58                98
  MALE                54                78
D2V4, continuous
D2V5, multiclass
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1              33                47
  T2              61               108
  T3               9                13
  T4               8                 8
D2V7, multiclass
       clus
vv      1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0                 73                99
  N1                 23                35
  N2+N3              12                40
D2V8, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              73               129
  M1               7                 9
  MX              29                34
D2V9, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  I                64                85
  II               25                36
  III              13                44
  IV                8                 8
D2V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      6  106
  1Q GAIN WILD-TYPE   13  163
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                6                13
  YES             106               163
D2V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     21   91
  1Q GAIN WILD-TYPE   23  153
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               21                23
  YES              91               153

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    21   9
  2P GAIN WILD-TYPE 152  72
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               224 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                9                72 
$`2P GAIN MUTATED`
TCGA-05-4420 TCGA-38-4630 TCGA-38-4632 TCGA-44-7670 TCGA-50-5946 TCGA-53-7624 
       29.95        35.28        44.61        17.46        11.47        35.11 
TCGA-55-1592 TCGA-55-1594 TCGA-55-6970 TCGA-55-7907 TCGA-55-7910 TCGA-64-1678 
       23.05        38.73        15.25         0.53         6.48        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-69-7764 TCGA-73-4675 TCGA-73-4676 TCGA-78-7145 
       37.02        83.84        13.61         1.32         4.01        27.16 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7539 
       35.93        21.86        38.50       223.96        26.53        10.75 
TCGA-78-7633 TCGA-86-7711 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-97-7547 
       32.68         0.89        41.33         1.28         0.36        47.18 

$`2P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        28.37        11.64         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
        5.33         5.03         1.64        18.31        18.87        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 
       33.37         0.72         8.38        31.89        13.74        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 
        0.69         0.10        56.81        20.65        55.40        44.38 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 
       13.87         5.06         6.12        22.68         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 
        1.25       163.10         5.65        19.27        20.58        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        19.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
        7.04       104.15         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 
       53.33        28.96        10.55        13.81         0.36         0.23 
TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.22         0.03         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.36              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           223.96            163.10 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           26.845            12.145 
[1] "0.4 - 224.0 (26.8)" "0.0 - 163.1 (12.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     13   23
  2P GAIN WILD-TYPE  143  109
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              13               143
  MALE                23               109
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1               5                75
  T2              27               142
  T3               1                21
  T4               3                13
D3V7, multiclass
       clus
vv      2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0                 20               152
  N1                  9                49
  N2+N3               7                45
D3V8, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0              23               179
  M1               5                11
  MX               7                56
D3V9, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  I                15               134
  II                9                52
  III               7                50
  IV                5                11
D3V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      2   34
  2P GAIN WILD-TYPE   17  235
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                2                17
  YES              34               235
D3V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      6   30
  2P GAIN WILD-TYPE   38  214
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                6                38
  YES              30               214

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    16   8
  2Q GAIN WILD-TYPE 157  73
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               24               230 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                8                73 
$`2Q GAIN MUTATED`
TCGA-35-5375 TCGA-38-4630 TCGA-38-4632 TCGA-44-7670 TCGA-53-7624 TCGA-55-1592 
        8.68        35.28        44.61        17.46        35.11        23.05 
TCGA-55-1594 TCGA-55-6970 TCGA-55-7907 TCGA-55-7910 TCGA-64-1680 TCGA-67-3771 
       38.73        15.25         0.53         6.48        37.02         1.97 
TCGA-69-7764 TCGA-73-4675 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7163 
       13.61         1.32        35.93        21.86        38.50       223.96 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7539 TCGA-78-7633 TCGA-91-6836 TCGA-97-7547 
       88.11        26.53        10.75        32.68         0.36        47.18 

$`2Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        28.37        11.64         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
        5.33         5.03         1.64        18.31        18.87        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72         8.38        31.89        13.74 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       42.48        40.70         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.62         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       55.40        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
       15.35         0.46         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        20.58        39.48        24.99        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
        8.48        31.20         8.02        53.33        28.96        10.55 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.36              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           223.96            163.10 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            24.79             12.21 
[1] "0.4 - 224.0 (24.8)" "0.0 - 163.1 (12.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     13   17
  2Q GAIN WILD-TYPE  143  115
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              13               143
  MALE                17               115
D4V4, continuous
[1] "Remove cluster labels:" "2Q GAIN MUTATED"       
clus
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                2                24 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7914        TCGA-64-1677        TCGA-64-1681 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
D4V5, multiclass
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               5                75
  T2              23               146
  T3               1                21
  T4               1                15
D4V7, multiclass
       clus
vv      2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0                 18               154
  N1                  6                52
  N2+N3               6                46
D4V8, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              21               181
  M1               4                12
  MX               4                59
D4V9, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  I                13               136
  II                6                55
  III               7                50
  IV                4                12
D4V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      1   29
  2Q GAIN WILD-TYPE   18  240
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                1                18
  YES              29               240
D4V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      4   26
  2Q GAIN WILD-TYPE   40  218
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                4                40
  YES              26               218

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED     5   4
  3P GAIN WILD-TYPE 168  77
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                9               245 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                77 
$`3P GAIN MUTATED`
TCGA-05-4427 TCGA-35-5375 TCGA-49-4487 TCGA-49-4488 TCGA-50-5946 TCGA-64-5775 
       26.01         8.68        28.11        28.57        11.47         0.10 
TCGA-69-7760 TCGA-73-4676 TCGA-78-7145 
        5.06         4.01        27.16 

$`3P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 
       17.46        17.59        13.74        76.21        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        44.38        83.84        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 
       15.35         0.46         1.32         1.25       163.10         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       32.68        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.10              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            28.57            223.96 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            11.47             13.61 
[1] "0.1 - 28.6 (11.5)"  "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      4    5
  3P GAIN WILD-TYPE  152  127
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               4               152
  MALE                 5               127
D5V4, continuous
[1] "Remove cluster labels:" "3P GAIN MUTATED"       
clus
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                2                24 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
D5V5, multiclass
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1               3                77
  T2               3               166
  T3               1                21
  T4               2                14
D5V7, multiclass
       clus
vv      3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0                  5               167
  N1                  3                55
  N2+N3               1                51
D5V8, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0               6               196
  M1               1                15
  MX               2                61
D5V9, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  I                 3               146
  II                3                58
  III               2                55
  IV                1                15
D5V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      1    8
  3P GAIN WILD-TYPE   18  261
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                1                18
  YES               8               261
D5V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      2    7
  3P GAIN WILD-TYPE   42  237
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                2                42
  YES               7               237

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    10   7
  3Q GAIN WILD-TYPE 163  74
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               17               237 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                74 
$`3Q GAIN MUTATED`
TCGA-05-4427 TCGA-05-5429 TCGA-35-5375 TCGA-38-4630 TCGA-44-5643 TCGA-44-7660 
       26.01         0.99         8.68        35.28         3.48         5.33 
TCGA-44-7670 TCGA-49-4487 TCGA-49-4488 TCGA-50-5931 TCGA-50-5946 TCGA-55-1594 
       17.46        28.11        28.57         8.78        11.47        38.73 
TCGA-55-6984 TCGA-69-7760 TCGA-73-4676 TCGA-78-7145 TCGA-78-7146 
       24.99         5.06         4.01        27.16         5.65 

$`3Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        28.37        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4490 
       18.31        18.87        17.59        13.74        76.21        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       60.03        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7147 TCGA-78-7148 
        0.46         1.32         1.25       163.10        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.99              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            38.73            223.96 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            11.47             13.61 
[1] "1.0 - 38.7 (11.5)"  "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      9    9
  3Q GAIN WILD-TYPE  147  123
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE               9               147
  MALE                 9               123
D6V4, continuous
[1] "Remove cluster labels:" "3Q GAIN MUTATED"       
clus
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                2                24 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
D6V5, multiclass
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1               5                75
  T2              10               159
  T3               2                20
  T4               1                15
D6V7, multiclass
       clus
vv      3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0                  8               164
  N1                  5                53
  N2+N3               5                47
D6V8, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0              13               189
  M1               1                15
  MX               3                60
D6V9, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  I                 7               142
  II                5                56
  III               5                52
  IV                1                15
D6V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      2   16
  3Q GAIN WILD-TYPE   17  253
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                2                17
  YES              16               253
D6V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      4   14
  3Q GAIN WILD-TYPE   40  230
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                4                40
  YES              14               230

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     9   9
  4P GAIN WILD-TYPE 164  72
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               18               236 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9                72 
$`4P GAIN MUTATED`
TCGA-05-5423 TCGA-38-4629 TCGA-38-4631 TCGA-44-4112 TCGA-44-5645 TCGA-50-6594 
        4.96        28.37        11.64         4.60         6.84        12.16 
TCGA-50-7109 TCGA-53-7624 TCGA-55-1594 TCGA-64-1680 TCGA-64-1681 TCGA-78-7145 
        8.38        35.11        38.73        37.02        44.38        27.16 
TCGA-78-7150 TCGA-78-7163 TCGA-78-7220 TCGA-78-7535 TCGA-78-7542 TCGA-91-6836 
       21.86       223.96        26.53        31.20        10.55         0.36 

$`4P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       85.32        37.71        49.02        35.28        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48        16.37         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 
        0.72        31.89        13.74        23.05        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        55.40        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        1.25       163.10         5.65        19.27        20.58        35.93 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 
        8.02        53.33        10.75        28.96        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.36              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           223.96            163.10 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           24.195            13.150 
[1] "0.4 - 224.0 (24.2)" "0.0 - 163.1 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      9   12
  4P GAIN WILD-TYPE  147  120
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               9               147
  MALE                12               120
D7V4, continuous
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                25 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7910        TCGA-55-7914 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-91-6849        TCGA-93-7348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-99-7458 
"4P GAIN WILD-TYPE" 
D7V5, multiclass
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               2                78
  T2              15               154
  T3               2                20
  T4               1                15
D7V7, multiclass
       clus
vv      4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0                 13               159
  N1                  3                55
  N2+N3               4                48
D7V8, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              15               187
  M1               3                13
  MX               2                61
D7V9, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  I                12               137
  II                3                58
  III               3                54
  IV                3                13
D7V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1   20
  4P GAIN WILD-TYPE   18  249
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                1                18
  YES              20               249
D7V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      3   18
  4P GAIN WILD-TYPE   41  226
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                3                41
  YES              18               226

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     3   3
  4Q GAIN WILD-TYPE 170  78
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                6               248 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                78 
$`4Q GAIN MUTATED`
TCGA-38-4629 TCGA-50-6594 TCGA-64-1680 TCGA-78-7163 TCGA-78-7542 TCGA-91-6836 
       28.37        12.16        37.02       223.96        10.55         0.36 

$`4Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        49.02        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 
        8.02        53.33        10.75        28.96        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.36              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           223.96            163.10 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           20.265            13.380 
[1] "0.4 - 224.0 (20.3)" "0.0 - 163.1 (13.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2    6
  4Q GAIN WILD-TYPE  154  126
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               2               154
  MALE                 6               126
D8V4, continuous
D8V5, multiclass
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               0                80
  T2               6               163
  T3               2                20
  T4               0                16
D8V7, multiclass
       clus
vv      4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0                  6               166
  N1                  0                58
  N2+N3               2                50
D8V8, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               6               196
  M1               1                15
  MX               1                62
D8V9, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  I                 5               144
  II                1                60
  III               1                56
  IV                1                15
D8V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    7
  4Q GAIN WILD-TYPE   18  262
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                18
  YES               7               262
D8V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    7
  4Q GAIN WILD-TYPE   43  237
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                43
  YES               7               237

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    67  33
  5P GAIN WILD-TYPE 106  48
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              100               154 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               33                48 
$`5P GAIN MUTATED`
TCGA-05-4405 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-5423 TCGA-05-5425 
       20.05        30.02        26.01        25.02         4.96         2.96 
TCGA-35-3615 TCGA-35-5375 TCGA-38-4626 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
        0.46         8.68        85.32        49.02        28.37        11.64 
TCGA-38-4632 TCGA-44-2656 TCGA-44-2659 TCGA-44-2668 TCGA-44-3919 TCGA-44-4112 
       44.61        19.10        17.39         8.09         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
       16.37         6.84         7.76         5.42         2.70        32.45 
TCGA-44-7659 TCGA-44-7662 TCGA-44-7669 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        9.80         1.64        18.87        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-50-5045 
       46.72        14.07        29.75        12.13        12.99        71.47 
TCGA-50-5051 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 TCGA-50-5946 TCGA-50-6591 
       14.96         9.27        77.88        21.47        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
       25.51        11.05         8.38        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 TCGA-55-6972 
       38.73        48.62         2.86         0.07        15.25        48.49 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6987 TCGA-55-7725 TCGA-55-7727 
        7.76         2.20        45.34        38.47         1.28         1.02 
TCGA-55-7903 TCGA-55-7910 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
        0.62         6.48        55.40        37.02        83.84        30.44 
TCGA-67-3770 TCGA-67-3773 TCGA-67-6215 TCGA-69-7760 TCGA-69-7765 TCGA-73-4658 
        0.99         2.04         0.89         5.06         4.24        52.57 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7147 
       15.35         0.46         1.32         4.01       163.10        19.27 
TCGA-78-7149 TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       35.93        19.50        38.50       223.96         8.48        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 
       31.20         8.02        10.75        32.68        13.81         0.89 
TCGA-91-6828 TCGA-91-6836 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-97-7547 
        1.22         0.36         9.76         4.18         1.12        47.18 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       43.76         8.65         5.95         0.59 

$`5P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       29.95        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 
        0.99         2.04         7.36         5.95        47.61        37.71 
TCGA-38-4630 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 
       35.28         5.19        26.30        18.87        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 
        3.48         0.30         3.35         9.93         3.12        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 
       36.49        16.41         5.33         5.03        18.31        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 
       17.59        13.74        76.21        35.54        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       29.46        43.20        15.02         4.93         0.03        20.48 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 
       48.82        25.81         9.76        49.28         8.05         8.78 
TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       35.87         8.45        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7813 
       42.31        12.16         6.21        33.37         0.72        13.74 
TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 
       45.17        32.61         0.79        42.48        40.70         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        3.88         5.46        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       71.05         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.79         1.78         0.53         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       20.65        39.09        44.38         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 
        7.33         1.97         0.59         0.59         0.69        13.87 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        6.12        22.68        13.61         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4677 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 
       20.28         1.25        27.16         5.65        20.58        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       39.48        24.99        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
        7.04       104.15        88.11        53.33        28.96        10.55 
TCGA-86-7701 TCGA-86-7713 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.36         0.23        41.33         0.03         1.28         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-95-7043 TCGA-95-7567 
       26.93         4.18         0.92         1.02         0.07         5.36 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7941 TCGA-99-7458 
       31.66        48.53         0.72         8.22 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.03 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           223.96            104.15 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            13.40             13.38 
[1] "0.1 - 224.0 (13.4)" "0.0 - 104.2 (13.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     61   52
  5P GAIN WILD-TYPE   95   80
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              61                95
  MALE                52                80
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              35                45
  T2              66               103
  T3               7                15
  T4               4                12
D9V7, multiclass
       clus
vv      5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0                 67               105
  N1                 21                37
  N2+N3              22                30
D9V8, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0              76               126
  M1               6                10
  MX              28                35
D9V9, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  I                59                90
  II               24                37
  III              22                35
  IV                7                 9
D9V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     11  102
  5P GAIN WILD-TYPE    8  167
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               11                 8
  YES             102               167
D9V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     19   94
  5P GAIN WILD-TYPE   25  150
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               19                25
  YES              94               150

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    25  10
  5Q GAIN WILD-TYPE 148  71
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               35               219 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               10                71 
$`5Q GAIN MUTATED`
TCGA-05-4426 TCGA-05-5423 TCGA-35-3615 TCGA-44-2659 TCGA-44-2665 TCGA-44-4112 
       26.01         4.96         0.46        17.39        13.15         4.60 
TCGA-44-5645 TCGA-44-6777 TCGA-44-7659 TCGA-49-4501 TCGA-49-4512 TCGA-50-5051 
        6.84        32.45         9.80        46.72        29.75        14.96 
TCGA-50-5935 TCGA-50-6591 TCGA-50-6592 TCGA-55-1595 TCGA-55-6543 TCGA-55-6972 
       21.47         3.88        25.51        48.62         0.07        48.49 
TCGA-55-6980 TCGA-55-7910 TCGA-64-1680 TCGA-64-5775 TCGA-67-6215 TCGA-69-7760 
        2.20         6.48        37.02         0.10         0.89         5.06 
TCGA-73-4675 TCGA-78-7147 TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 TCGA-78-7539 
        1.32        19.27       223.96        26.53         8.02        10.75 
TCGA-78-7633 TCGA-83-5908 TCGA-91-6836 TCGA-93-7347 TCGA-97-7547 
       32.68        13.81         0.36         9.76        47.18 

$`5Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       26.30        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       35.54        14.07        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 
        9.37         4.44        12.26        11.47        42.31        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
       31.89        13.74        23.05        38.73        45.17         2.86 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        3.88         5.46         7.76        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        1.78         0.62         0.53         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 
       20.65        39.09        55.40        44.38        83.84        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        2.04         0.59         0.69        13.87         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       13.61         4.24         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       20.28        15.35         0.46         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 
       22.29         7.04       104.15         8.48        88.11        31.20 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       53.33        28.96        10.55         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        4.18         0.92         1.02         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        5.36        31.66        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.07              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           223.96            163.10 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            13.15             13.61 
[1] "0.1 - 224.0 (13.2)" "0.0 - 163.1 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     23   14
  5Q GAIN WILD-TYPE  133  118
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              23               133
  MALE                14               118
D10V4, continuous
[1] "Remove cluster labels:" "5Q GAIN MUTATED"       
clus
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                2                24 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7914        TCGA-64-1677 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
D10V5, multiclass
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               8                72
  T2              25               144
  T3               2                20
  T4               1                15
D10V7, multiclass
       clus
vv      5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0                 24               148
  N1                  5                53
  N2+N3               6                46
D10V8, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              26               176
  M1               3                13
  MX               6                57
D10V9, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  I                20               129
  II                7                54
  III               6                51
  IV                3                13
D10V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      5   32
  5Q GAIN WILD-TYPE   14  237
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                5                14
  YES              32               237
D10V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      9   28
  5Q GAIN WILD-TYPE   35  216
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                9                35
  YES              28               216

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    27  11
  6P GAIN WILD-TYPE 146  70
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               38               216 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               11                70 
$`6P GAIN MUTATED`
TCGA-05-4420 TCGA-05-5425 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 TCGA-44-6147 
       29.95         2.96         0.46         8.68        47.61         7.76 
TCGA-44-6774 TCGA-44-7667 TCGA-44-7670 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 
        5.42        18.31        17.46         9.37        12.26        11.47 
TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-55-6970 
        3.88         0.72         8.38        23.05        48.62        15.25 
TCGA-64-1677 TCGA-64-1680 TCGA-67-3773 TCGA-69-7763 TCGA-69-7764 TCGA-73-4662 
       20.65        37.02         2.04        22.68        13.61        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7147 TCGA-78-7149 TCGA-78-7155 
       15.35         0.46         1.25        19.27        35.93        38.50 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7220 TCGA-78-7539 TCGA-78-7633 TCGA-91-6836 
        7.04       104.15        26.53        10.75        32.68         0.36 
TCGA-97-7553 TCGA-97-7938 
       43.76         0.59 

$`6P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        9.93         3.12         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 
       16.41         9.80         5.33         5.03         1.64        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 
       77.88        21.47         8.45        15.12         4.44        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 
       25.51        11.05        12.16         6.21        33.37        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       31.89        13.74        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        42.48        40.70         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
        0.10        56.81        39.09        55.40        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.97         0.59         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.06         6.12         4.24         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
       20.28         1.32         4.01       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
       20.58        21.86        39.48        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
        5.88        40.11        22.29       223.96         8.48        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 
       31.20         8.02        53.33        28.96        10.55        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
       47.18        48.53         8.65         5.95         0.72         8.22 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.36              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           104.15            223.96 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            14.43             13.15 
[1] "0.4 - 104.2 (14.4)" "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     23   16
  6P GAIN WILD-TYPE  133  116
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              23               133
  MALE                16               116
D11V4, continuous
D11V5, multiclass
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1              14                66
  T2              21               148
  T3               3                19
  T4               1                15
D11V7, multiclass
       clus
vv      6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0                 27               145
  N1                  4                54
  N2+N3               7                45
D11V8, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              28               174
  M1               3                13
  MX               8                55
D11V9, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  I                22               127
  II                7                54
  III               7                50
  IV                3                13
D11V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2   37
  6P GAIN WILD-TYPE   17  232
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                2                17
  YES              37               232
D11V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      7   32
  6P GAIN WILD-TYPE   37  212
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                7                37
  YES              32               212

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED     6   3
  6Q GAIN WILD-TYPE 167  78
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                9               245 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3                78 
$`6Q GAIN MUTATED`
TCGA-38-4625 TCGA-44-7670 TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 TCGA-55-7910 
       47.61        17.46         3.88         0.72         8.38         6.48 
TCGA-78-7220 TCGA-78-7539 TCGA-91-6836 
       26.53        10.75         0.36 

$`6Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.87        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       12.16         6.21        33.37        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.02         0.79         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.10        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       13.61         4.24         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 
        8.48        88.11        31.20         8.02        53.33        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.36              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            47.61            223.96 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             8.38             13.74 
[1] "0.4 - 47.6 (8.4)"   "0.0 - 224.0 (13.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      8    1
  6Q GAIN WILD-TYPE  148  131
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               8               148
  MALE                 1               131
D12V4, continuous
[1] "Remove cluster labels:" "6Q GAIN MUTATED"       
clus
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                1                25 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7914        TCGA-64-1677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-91-6849        TCGA-93-7348 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-99-7458 
"6Q GAIN WILD-TYPE" 
D12V5, multiclass
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               3                77
  T2               6               163
  T3               0                22
  T4               0                16
D12V7, multiclass
       clus
vv      6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0                  7               165
  N1                  1                57
  N2+N3               1                51
D12V8, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0               6               196
  M1               1                15
  MX               2                61
D12V9, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  I                 4               145
  II                3                58
  III               1                56
  IV                1                15
D12V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      0    9
  6Q GAIN WILD-TYPE   19  260
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                0                19
  YES               9               260
D12V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      2    7
  6Q GAIN WILD-TYPE   42  237
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                2                42
  YES               7               237

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    54  33
  7P GAIN WILD-TYPE 119  48
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               87               167 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               33                48 
$`7P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-5423 TCGA-35-4122 TCGA-35-5375 TCGA-38-4628 TCGA-38-4629 
       29.95         4.96         7.36         8.68        49.02        28.37 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 
       11.64        44.61         5.19        19.10        17.39        15.78 
TCGA-44-3396 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 
       10.22         4.60        16.37         6.84         0.30         7.76 
TCGA-44-6775 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-49-4488 TCGA-49-4490 
        2.70         5.33         1.64        18.87        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 TCGA-49-6761 TCGA-50-5045 
       35.54        14.07        29.75         4.93         0.03        71.47 
TCGA-50-5055 TCGA-50-5933 TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       25.81        77.88         8.45        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 
        3.88        11.05        12.16         6.21         0.72        35.11 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6972 TCGA-55-6979 TCGA-55-6980 
        2.86         0.07         0.79        48.49         7.76         2.20 
TCGA-55-6981 TCGA-55-6985 TCGA-55-7283 TCGA-55-7576 TCGA-55-7910 TCGA-64-1680 
       45.34        40.54         1.12         1.32         6.48        37.02 
TCGA-64-1681 TCGA-64-5779 TCGA-64-5781 TCGA-67-6217 TCGA-69-7760 TCGA-71-6725 
       44.38        16.67        39.52        13.87         5.06         2.01 
TCGA-73-4658 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 
       52.57         0.46         1.32         4.01       163.10        27.16 
TCGA-78-7147 TCGA-78-7150 TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 TCGA-78-7163 
       19.27        21.86        19.50        38.50         7.04       223.96 
TCGA-78-7535 TCGA-78-7540 TCGA-86-7701 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
       31.20        28.96         0.36         1.28         1.15        26.93 
TCGA-91-6848 TCGA-97-7554 TCGA-97-7937 
        4.18         8.65         5.95 

$`7P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 
       38.07        19.92        14.01         9.96        24.03        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        0.46         5.95        47.61        85.32        37.71        35.28 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       26.30        18.87        13.15         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-6145 
        8.09         8.32         6.44         6.21         3.48         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        9.93         3.12         5.42        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 
       16.41         9.80         5.03        18.31        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       13.74        76.21        28.11        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 
       29.46        43.20        15.02        12.13        12.99        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        14.96         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        8.78        35.87        21.47        15.12         9.37         4.44 
TCGA-50-6592 TCGA-50-6597 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       25.51        33.37         8.38        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       38.73        48.62        45.17        32.61        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6982 TCGA-55-6983 
       15.25         0.92         3.88         5.46        32.71        60.03 
TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 
       24.99        71.05        38.47         0.59         0.13         3.12 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        30.44         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 
        0.59         2.04         0.59         0.89         0.69         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       22.68        13.61         4.24        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4677 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
       15.35         1.25         5.65        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 
       24.99        32.09         5.88        40.11        22.29       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       10.55        32.68        13.81         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6836 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
       41.33         0.03         0.36         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       48.53        43.76         0.59         0.72         8.22 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.03              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           223.96            104.15 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            11.64             13.81 
[1] "0.0 - 224.0 (11.6)" "0.0 - 104.2 (13.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     53   46
  7P GAIN WILD-TYPE  103   86
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              53               103
  MALE                46                86
D13V4, continuous
D13V5, multiclass
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              20                60
  T2              63               106
  T3              10                12
  T4               5                11
D13V7, multiclass
       clus
vv      7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0                 49               123
  N1                 21                37
  N2+N3              26                26
D13V8, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              68               134
  M1               9                 7
  MX              17                46
D13V9, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  I                43               106
  II               19                42
  III              25                32
  IV                9                 7
D13V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      5   94
  7P GAIN WILD-TYPE   14  175
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                5                14
  YES              94               175
D13V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     17   82
  7P GAIN WILD-TYPE   27  162
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               17                27
  YES              82               162

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    44  18
  7Q GAIN WILD-TYPE 129  63
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               62               192 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               18                63 
$`7Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-5423 TCGA-05-5425 TCGA-35-4122 TCGA-35-5375 TCGA-38-4632 
       29.95         4.96         2.96         7.36         8.68        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2662 TCGA-44-3396 TCGA-44-5645 TCGA-44-6144 
        5.19        19.10        15.78        10.22         6.84         0.30 
TCGA-44-6147 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-49-4490 TCGA-49-4494 
        7.76         5.33         1.64        18.87        12.66        35.54 
TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 TCGA-50-5045 TCGA-50-5930 TCGA-50-5944 
       14.07        29.75         4.93        71.47         9.27        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-6543 TCGA-55-6712 
       11.47        42.31         3.88        23.05         0.07         0.79 
TCGA-55-6972 TCGA-55-6980 TCGA-55-6981 TCGA-55-6985 TCGA-55-7283 TCGA-55-7576 
       48.49         2.20        45.34        40.54         1.12         1.32 
TCGA-55-7910 TCGA-64-1680 TCGA-64-1681 TCGA-64-5781 TCGA-69-7760 TCGA-71-6725 
        6.48        37.02        44.38        39.52         5.06         2.01 
TCGA-73-4658 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7145 
       52.57        20.28         0.46         1.32         4.01        27.16 
TCGA-78-7163 TCGA-78-7540 TCGA-86-7701 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
      223.96        28.96         0.36         1.15        26.93         4.18 
TCGA-97-7554 TCGA-97-7937 
        8.65         5.95 

$`7Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 
       38.07        19.92        14.01         9.96        24.03        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       24.00        15.02         1.02         0.99         2.04         0.46 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       35.28        11.64        26.30        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
        3.39        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48        16.37         3.35         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 
       16.41         9.80         5.03        18.31        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 
       13.74        76.21        28.11        28.57        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        43.20        15.02        12.13        12.99 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6592 TCGA-50-6593 
        8.45        15.12         9.37         4.44        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        13.74        38.73        48.62        45.17         2.86 
TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
       32.61        42.48        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 
        5.46         7.76        32.71        60.03        24.99        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 
       38.47         0.59         0.13         3.12         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         0.53         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        55.40        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        2.04         0.59         0.89         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
       22.68        13.61         4.24        23.38        29.95        15.35 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        1.25       163.10         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       10.55        32.68        13.81         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6849 TCGA-91-7771 
       41.33         0.03         1.28         0.36         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       47.18        48.53        43.76         0.59         0.72         8.22 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.07              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           223.96            163.10 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            8.975            13.940 
[1] "0.1 - 224.0 (9.0)"  "0.0 - 163.1 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     34   36
  7Q GAIN WILD-TYPE  122   96
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              34               122
  MALE                36                96
D14V4, continuous
D14V5, multiclass
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              14                66
  T2              44               125
  T3               7                15
  T4               4                12
D14V7, multiclass
       clus
vv      7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0                 36               136
  N1                 14                44
  N2+N3              17                35
D14V8, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0              44               158
  M1               8                 8
  MX              14                49
D14V9, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  I                30               119
  II               12                49
  III              17                40
  IV                8                 8
D14V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      6   64
  7Q GAIN WILD-TYPE   13  205
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                6                13
  YES              64               205
D14V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     13   57
  7Q GAIN WILD-TYPE   31  187
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO               13                31
  YES              57               187

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    23   6
  8P GAIN WILD-TYPE 150  75
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               29               225 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                6                75 
$`8P GAIN MUTATED`
TCGA-05-4417 TCGA-05-4432 TCGA-35-5375 TCGA-38-4629 TCGA-44-6147 TCGA-44-6778 
       14.93        25.02         8.68        28.37         7.76        36.49 
TCGA-44-7667 TCGA-44-7669 TCGA-49-4512 TCGA-50-5051 TCGA-50-5944 TCGA-50-5946 
       18.31        18.87        29.75        14.96        12.26        11.47 
TCGA-50-7109 TCGA-55-1596 TCGA-55-6969 TCGA-64-1680 TCGA-64-5779 TCGA-73-4670 
        8.38        45.17        40.70        37.02        16.67         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7153 TCGA-78-7158 TCGA-78-7159 
        1.32         4.01         1.25        24.99         5.88        40.11 
TCGA-78-7535 TCGA-91-6831 TCGA-91-7771 TCGA-97-7547 TCGA-97-7553 
       31.20         1.28         1.02        47.18        43.76 

$`8P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 
       21.47         8.45        15.12         9.37         4.44        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        0.72        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       48.62         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        44.38        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
       29.95        20.28        15.35       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 
       19.27        20.58        35.93        21.86        39.48        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
       38.50        32.09        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
        0.23         1.22        41.33         0.03         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
       26.93         4.18         0.92         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 
        0.07         5.36        31.66        48.53         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.46              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            47.18            223.96 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            16.67             12.99 
[1] "0.5 - 47.2 (16.7)"  "0.0 - 224.0 (13.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     14   19
  8P GAIN WILD-TYPE  142  113
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              14               142
  MALE                19               113
D15V4, continuous
[1] "Remove cluster labels:" "8P GAIN MUTATED"       
clus
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                2                24 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
D15V5, multiclass
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1               8                72
  T2              20               149
  T3               4                18
  T4               1                15
D15V7, multiclass
       clus
vv      8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0                 19               153
  N1                  6                52
  N2+N3               6                46
D15V8, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              20               182
  M1               2                14
  MX              11                52
D15V9, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  I                17               132
  II                8                53
  III               6                51
  IV                2                14
D15V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      3   30
  8P GAIN WILD-TYPE   16  239
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                3                16
  YES              30               239
D15V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      8   25
  8P GAIN WILD-TYPE   36  219
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                8                36
  YES              25               219

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED    53  24
  8Q GAIN WILD-TYPE 120  57
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               77               177 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               24                57 
$`8Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4432 TCGA-05-5420 
       37.02        47.05         8.02        14.93        25.02         1.02 
TCGA-05-5423 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        4.96         8.68        47.61        49.02        28.37        44.61 
TCGA-44-2656 TCGA-44-2668 TCGA-44-3918 TCGA-44-5644 TCGA-44-6144 TCGA-44-6147 
       19.10         8.09         6.44        16.37         0.30         7.76 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-49-4488 
       36.49        16.41         1.64        18.31        18.87        28.57 
TCGA-49-4512 TCGA-49-6761 TCGA-50-5051 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 
       29.75         0.03        14.96         9.76        77.88         9.37 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-7109 TCGA-53-7813 
       12.26        11.47         3.88        11.05         8.38        13.74 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       48.62        45.17         2.86        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6972 TCGA-55-6982 TCGA-55-7907 TCGA-55-7914 TCGA-64-1677 
       15.25        48.49        32.71         0.53         0.10        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 TCGA-67-3771 TCGA-69-7760 
       39.09        37.02         0.10        16.67         1.97         5.06 
TCGA-71-6725 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
        2.01         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7146 TCGA-78-7152 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7220 
        5.65        39.48         5.88        40.11         7.04        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 TCGA-91-6828 TCGA-91-6831 
       31.20         8.02        10.75        10.55         1.22         1.28 
TCGA-91-6847 TCGA-91-7771 TCGA-97-7547 TCGA-97-7553 TCGA-97-7938 
       26.93         1.02        47.18        43.76         0.59 

$`8Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96         8.98        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5425 TCGA-05-5429 
       26.01        25.02        24.00        15.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64         5.19        26.30        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
        8.32         6.21         4.60         3.48         6.84         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         3.12         5.42         2.70        63.72        32.45 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        9.80         5.33         5.03        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       12.99         4.93        20.48        71.47        48.82        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 
        8.45        15.12         4.44        42.31        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
        6.21        33.37         0.72        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-6543 TCGA-55-6968 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
       38.73         0.07        42.48         0.92         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        7.76         2.20        45.34        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7910 TCGA-55-7911 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
        6.48         0.69        56.81        55.40        44.38        83.84 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       30.44        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69        13.87         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.61         4.24        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       15.35        27.16        19.27        20.58        35.93        21.86 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7160 TCGA-78-7162 
       24.99        19.50        38.50        32.09        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 
      223.96         8.48        88.11        53.33        28.96        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6830 
       13.81         0.36         0.89         0.23        41.33         0.03 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 
        1.15         0.36         4.18         0.92         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7554 
        1.12         0.07         5.36        31.66        48.53         8.65 
TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
        5.95         0.72         8.22 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.03 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           163.10            223.96 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            12.26             13.61 
[1] "0.0 - 163.1 (12.3)" "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     46   45
  8Q GAIN WILD-TYPE  110   87
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              46               110
  MALE                45                87
D16V4, continuous
D16V5, multiclass
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              23                57
  T2              55               114
  T3               7                15
  T4               6                10
D16V7, multiclass
       clus
vv      8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0                 51               121
  N1                 17                41
  N2+N3              20                32
D16V8, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              60               142
  M1               6                10
  MX              24                39
D16V9, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  I                42               107
  II               21                40
  III              21                36
  IV                6                10
D16V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      5   86
  8Q GAIN WILD-TYPE   14  183
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                5                14
  YES              86               183
D16V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     12   79
  8Q GAIN WILD-TYPE   32  165
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               12                32
  YES              79               165

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED     3   1
  9P GAIN WILD-TYPE 170  80
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                4               250 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                1                80 
$`9P GAIN MUTATED`
TCGA-05-4427 TCGA-55-7903 TCGA-64-5775 TCGA-78-7163 
       26.01         0.62         0.10       223.96 

$`9P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        8.38        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        1.78         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.10              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           223.96            163.10 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           13.315            13.380 
[1] "0.1 - 224.0 (13.3)" "0.0 - 163.1 (13.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "3.4"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      1    4
  9P GAIN WILD-TYPE  155  128
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE               1               155
  MALE                 4               128
D17V4, continuous
D17V5, multiclass
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               1                79
  T2               3               166
  T3               0                22
  T4               1                15
D17V7, multiclass
       clus
vv      9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0                  4               168
  N1                  1                57
  N2+N3               0                52
D17V8, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0               4               198
  M1               0                16
  MX               1                62
D17V9, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  I                 3               146
  II                1                60
  III               1                56
  IV                0                16
D17V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0    5
  9P GAIN WILD-TYPE   19  264
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                19
  YES               5               264
D17V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0    5
  9P GAIN WILD-TYPE   44  239
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                44
  YES               5               239

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED     3   0
  9Q GAIN WILD-TYPE 170  81
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3               251 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                0                81 
$`9Q GAIN MUTATED`
TCGA-05-4427 TCGA-78-7163 TCGA-91-6836 
       26.01       223.96         0.36 

$`9Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        8.38        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       15.35         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.36              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           223.96            163.10 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            26.01             13.15 
[1] "0.4 - 224.0 (26.0)" "0.0 - 163.1 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr="     "3.5e+07"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      2    1
  9Q GAIN WILD-TYPE  154  131
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               2               154
  MALE                 1               131
D18V4, continuous
D18V5, multiclass
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               0                80
  T2               3               166
  T3               0                22
  T4               0                16
D18V7, multiclass
       clus
vv      9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0                  2               170
  N1                  1                57
  N2+N3               0                52
D18V8, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0               2               200
  M1               0                16
  MX               1                62
D18V9, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  I                 2               147
  II                1                60
  III               0                57
  IV                0                16
D18V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0    3
  9Q GAIN WILD-TYPE   19  266
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                19
  YES               3               266
D18V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0    3
  9Q GAIN WILD-TYPE   44  241
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                44
  YES               3               241

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    19   8
  10P GAIN WILD-TYPE 154  73
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                27                227 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 8                 73 
$`10P GAIN MUTATED`
TCGA-05-4405 TCGA-05-4430 TCGA-38-4632 TCGA-44-7671 TCGA-49-4487 TCGA-50-5051 
       20.05        25.02        44.61        17.59        28.11        14.96 
TCGA-50-5068 TCGA-50-5946 TCGA-50-7109 TCGA-55-6970 TCGA-55-6972 TCGA-55-7910 
       49.28        11.47         8.38        15.25        48.49         6.48 
TCGA-64-1678 TCGA-69-7763 TCGA-71-6725 TCGA-73-4670 TCGA-73-4677 TCGA-78-7149 
       39.09        22.68         2.01         0.46         1.25        35.93 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 TCGA-78-7542 TCGA-78-7633 TCGA-86-7711 
       19.50        38.50         7.04        10.55        32.68         0.89 
TCGA-91-6836 TCGA-95-7567 TCGA-97-7937 
        0.36         5.36         5.95 

$`10P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       13.74        76.21        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 
       71.47        48.82        25.81         9.76         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 
       11.05        12.16         6.21        33.37         0.72        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.02         0.79         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
        0.10        56.81        20.65        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         5.06         6.12        13.61         4.24 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
       52.57        23.38        29.95        20.28        15.35         1.32 
TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        4.01       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       21.86        39.48        24.99        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
       22.29       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-83-5908 
       31.20         8.02        53.33        10.75        28.96        13.81 
TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.36         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        4.18         1.12         0.07        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         0.59         0.72         8.22 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.36               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             49.28             223.96 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             15.25              13.15 
[1] "0.4 - 49.3 (15.2)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     13   18
  10P GAIN WILD-TYPE  143  114
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE               13                143
  MALE                 18                114
D19V4, continuous
D19V5, multiclass
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                6                 74
  T2               22                147
  T3                2                 20
  T4                1                 15
D19V7, multiclass
       clus
vv      10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                  24                148
  N1                   4                 54
  N2+N3                3                 49
D19V8, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               23                179
  M1                2                 14
  MX                6                 57
D19V9, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  I                 20                129
  II                 5                 56
  III                4                 53
  IV                 2                 14
D19V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1   30
  10P GAIN WILD-TYPE   18  239
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 1                 18
  YES               30                239
D19V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      4   27
  10P GAIN WILD-TYPE   40  217
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 4                 40
  YES               27                217

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    12   4
  10Q GAIN WILD-TYPE 161  77
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                16                238 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 4                 77 
$`10Q GAIN MUTATED`
TCGA-05-4430 TCGA-44-6144 TCGA-44-7671 TCGA-49-4487 TCGA-50-5051 TCGA-50-5946 
       25.02         0.30        17.59        28.11        14.96        11.47 
TCGA-55-6970 TCGA-55-6972 TCGA-69-7763 TCGA-71-6725 TCGA-73-4670 TCGA-73-4675 
       15.25        48.49        22.68         2.01         0.46         1.32 
TCGA-73-4677 TCGA-78-7149 TCGA-78-7154 TCGA-78-7161 
        1.25        35.93        19.50         7.04 

$`10Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       17.46        13.74        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
        8.45        15.12         9.37         4.44        12.26        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
        0.79        42.48        40.70         0.92         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 
       13.87         5.06         6.12        13.61         4.24        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-78-7143 
       23.38        29.95        20.28        15.35         4.01       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        19.27        20.58        21.86        39.48 
TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.30               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             48.49             223.96 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            15.105             13.150 
[1] "0.3 - 48.5 (15.1)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      7   11
  10Q GAIN WILD-TYPE  149  121
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                7                149
  MALE                 11                121
D20V4, continuous
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 25 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-73-4659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-91-6849         TCGA-93-7348 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"10Q GAIN WILD-TYPE" 
D20V5, multiclass
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                5                 75
  T2                9                160
  T3                3                 19
  T4                1                 15
D20V7, multiclass
       clus
vv      10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                  14                158
  N1                   1                 57
  N2+N3                3                 49
D20V8, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0               15                187
  M1                1                 15
  MX                2                 61
D20V9, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  I                 11                138
  II                 1                 60
  III                5                 52
  IV                 1                 15
D20V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1   17
  10Q GAIN WILD-TYPE   18  252
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                 18
  YES               17                252
D20V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2   16
  10Q GAIN WILD-TYPE   42  228
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 2                 42
  YES               16                228

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    16   6
  11P GAIN WILD-TYPE 157  75
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                22                232 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 6                 75 
$`11P GAIN MUTATED`
TCGA-05-4415 TCGA-05-4420 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 
        2.96        29.95        25.02         4.96         0.99        49.02 
TCGA-38-4629 TCGA-44-5645 TCGA-44-6779 TCGA-44-7660 TCGA-44-7669 TCGA-55-1594 
       28.37         6.84        16.41         5.33        18.87        38.73 
TCGA-55-6543 TCGA-55-6712 TCGA-64-5775 TCGA-64-5779 TCGA-67-6215 TCGA-71-6725 
        0.07         0.79         0.10        16.67         0.89         2.01 
TCGA-73-4662 TCGA-78-7163 TCGA-95-7043 TCGA-97-7554 
       29.95       223.96         0.07         8.65 

$`11P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         2.96         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 
        8.68        47.61        85.32        37.71        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 
       23.05        48.62        45.17         2.86        32.61        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
       22.68        13.61         4.24        52.57        23.38        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       15.35         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.12         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            223.96             163.10 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             7.745             13.675 
[1] "0.1 - 224.0 (7.7)"  "0.0 - 163.1 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     10   13
  11P GAIN WILD-TYPE  146  119
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               10                146
  MALE                 13                119
D21V4, continuous
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-73-4659 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-75-5122         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
D21V5, multiclass
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                5                 75
  T2               13                156
  T3                2                 20
  T4                2                 14
D21V7, multiclass
       clus
vv      11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0                  11                161
  N1                   6                 52
  N2+N3                5                 47
D21V8, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               15                187
  M1                1                 15
  MX                5                 58
D21V9, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  I                  8                141
  II                 6                 55
  III                6                 51
  IV                 1                 15
D21V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1   22
  11P GAIN WILD-TYPE   18  247
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 1                 18
  YES               22                247
D21V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      4   19
  11P GAIN WILD-TYPE   40  225
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 4                 40
  YES               19                225

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    23   8
  11Q GAIN WILD-TYPE 150  73
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                31                223 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 8                 73 
$`11Q GAIN MUTATED`
TCGA-05-4420 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 TCGA-38-4629 
       29.95        25.02         4.96         0.99        49.02        28.37 
TCGA-44-2656 TCGA-44-5645 TCGA-44-6774 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 
       19.10         6.84         5.42        16.41         5.33         1.64 
TCGA-44-7669 TCGA-50-5933 TCGA-53-7624 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 
       18.87        77.88        35.11        38.73        45.17         0.07 
TCGA-55-6712 TCGA-55-7910 TCGA-64-5775 TCGA-64-5779 TCGA-67-6215 TCGA-71-6725 
        0.79         6.48         0.10        16.67         0.89         2.01 
TCGA-73-4666 TCGA-73-4676 TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 TCGA-91-6848 
       20.28         4.01        19.50        38.50       223.96         4.18 
TCGA-95-7043 
        0.07 

$`11Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
        8.98        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       15.02         1.02         2.96         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        5.95         8.68        47.61        85.32        37.71        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 
       11.64        44.61         5.19        26.30        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 
        2.70        63.72        32.45        36.49         9.80         5.03 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.31        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6642 
       31.89        13.74        23.05        48.62         2.86        32.61 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        1.78         0.62         0.53         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       22.68        13.61         4.24        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
       15.35         0.46         1.32         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       24.99        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      104.15         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15         0.36        26.93         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        9.76         4.18         1.12         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            223.96             163.10 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             16.41              13.15 
[1] "0.1 - 224.0 (16.4)" "0.0 - 163.1 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     13   20
  11Q GAIN WILD-TYPE  143  112
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               13                143
  MALE                 20                112
D22V4, continuous
D22V5, multiclass
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                6                 74
  T2               21                148
  T3                3                 19
  T4                2                 14
D22V7, multiclass
       clus
vv      11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0                  17                155
  N1                   8                 50
  N2+N3                7                 45
D22V8, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               21                181
  M1                3                 13
  MX                7                 56
D22V9, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  I                 11                138
  II                 9                 52
  III                8                 49
  IV                 3                 13
D22V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      3   30
  11Q GAIN WILD-TYPE   16  239
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 3                 16
  YES               30                239
D22V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      4   29
  11Q GAIN WILD-TYPE   40  215
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 4                 40
  YES               29                215

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    22   9
  12P GAIN WILD-TYPE 151  72
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                31                223 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 9                 72 
$`12P GAIN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-44-3918 
       37.02        14.93         8.98        29.95        25.02         6.44 
TCGA-44-5643 TCGA-44-5644 TCGA-44-7669 TCGA-44-7670 TCGA-49-4510 TCGA-49-4512 
        3.48        16.37        18.87        17.46        29.46        29.75 
TCGA-50-5072 TCGA-50-5941 TCGA-55-1594 TCGA-55-1595 TCGA-55-6712 TCGA-55-6981 
        8.05         9.37        38.73        48.62         0.79        45.34 
TCGA-55-6985 TCGA-55-7728 TCGA-55-7910 TCGA-64-1678 TCGA-64-5775 TCGA-67-3774 
       40.54         0.79         6.48        39.09         0.10         0.59 
TCGA-73-4670 TCGA-73-4675 TCGA-78-7145 TCGA-78-7154 TCGA-78-7220 TCGA-86-7713 
        0.46         1.32        27.16        19.50        26.53         0.23 
TCGA-91-6836 
        0.36 

$`12P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 TCGA-05-4426 
       47.05         8.02        20.05         2.96        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 
        9.80         5.33         5.03         1.64        18.31        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 
       46.72        14.07        32.84         8.81        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 
       35.11        31.89        13.74        23.05        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 
       48.49         3.88         5.46         7.76         2.20        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       60.03        24.99        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 
        0.13         3.12         1.32         1.28         1.02         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         0.53         0.69         0.10        56.81        20.65 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       55.40        37.02        44.38        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       13.61         4.24         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 
       20.28        15.35         4.01         1.25       163.10         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.36         0.89         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.10               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             48.62             223.96 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             16.37              13.15 
[1] "0.1 - 48.6 (16.4)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     22   16
  12P GAIN WILD-TYPE  134  116
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               22                134
  MALE                 16                116
D23V4, continuous
[1] "Remove cluster labels:" "12P GAIN MUTATED"      
clus
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 2                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7714 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
D23V5, multiclass
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1                6                 74
  T2               24                145
  T3                5                 17
  T4                3                 13
D23V7, multiclass
       clus
vv      12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0                  17                155
  N1                  10                 48
  N2+N3               11                 41
D23V8, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0               27                175
  M1                2                 14
  MX                8                 55
D23V9, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  I                 12                137
  II                10                 51
  III               13                 44
  IV                 2                 14
D23V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      2   36
  12P GAIN WILD-TYPE   17  233
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 2                 17
  YES               36                233
D23V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      6   32
  12P GAIN WILD-TYPE   38  212
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 6                 38
  YES               32                212

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    19   6
  12Q GAIN WILD-TYPE 154  75
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                25                229 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 6                 75 
$`12Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-44-3918 
       37.02        14.93         8.98        29.95        25.02         6.44 
TCGA-44-5644 TCGA-44-7669 TCGA-44-7670 TCGA-49-4510 TCGA-49-4512 TCGA-50-5072 
       16.37        18.87        17.46        29.46        29.75         8.05 
TCGA-50-5941 TCGA-55-1594 TCGA-55-1595 TCGA-55-7728 TCGA-55-7910 TCGA-64-1678 
        9.37        38.73        48.62         0.79         6.48        39.09 
TCGA-64-5779 TCGA-67-3774 TCGA-73-4670 TCGA-73-4675 TCGA-78-7145 TCGA-78-7220 
       16.67         0.59         0.46         1.32        27.16        26.53 
TCGA-91-6836 
        0.36 

$`12Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 TCGA-05-4426 
       47.05         8.02        20.05         2.96        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 
       35.54        46.72        14.07        32.84         8.81        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 
        8.38        35.11        31.89        13.74        23.05        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.32         1.28         1.02         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
        0.69         0.10        56.81        20.65        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84         0.10        30.44        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        4.01         1.25       163.10         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.36               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             48.62             223.96 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             16.67              12.99 
[1] "0.4 - 48.6 (16.7)"  "0.0 - 224.0 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     19   12
  12Q GAIN WILD-TYPE  137  120
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               19                137
  MALE                 12                120
D24V4, continuous
[1] "Remove cluster labels:" "12Q GAIN MUTATED"      
clus
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 1                 25 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-91-6849         TCGA-93-7348 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"12Q GAIN WILD-TYPE" 
D24V5, multiclass
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                4                 76
  T2               21                148
  T3                4                 18
  T4                2                 14
D24V7, multiclass
       clus
vv      12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0                  14                158
  N1                   8                 50
  N2+N3                9                 43
D24V8, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0               23                179
  M1                2                 14
  MX                5                 58
D24V9, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  I                 10                139
  II                 9                 52
  III               10                 47
  IV                 2                 14
D24V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      1   30
  12Q GAIN WILD-TYPE   18  239
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 1                 18
  YES               30                239
D24V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      6   25
  12Q GAIN WILD-TYPE   38  219
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 6                 38
  YES               25                219

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED     8   4
  13Q GAIN WILD-TYPE 165  77
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                12                242 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 77 
$`13Q GAIN MUTATED`
TCGA-38-4631 TCGA-44-7671 TCGA-53-7624 TCGA-55-7910 TCGA-64-1678 TCGA-64-1680 
       11.64        17.59        35.11         6.48        39.09        37.02 
TCGA-67-3771 TCGA-73-4677 TCGA-78-7149 TCGA-78-7220 TCGA-78-7537 TCGA-97-7547 
        1.97         1.25        35.93        26.53        53.33        47.18 

$`13Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.87        17.46        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
        0.53         0.69         0.10        56.81        20.65        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 
       15.35         0.46         1.32         4.01       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        20.58        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 
        7.04       104.15       223.96         8.48        88.11        31.20 
TCGA-78-7536 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
        8.02        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              1.25               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             53.33             223.96 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             30.82              13.07 
[1] "1.2 - 53.3 (30.8)"  "0.0 - 224.0 (13.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      8    7
  13Q GAIN WILD-TYPE  148  125
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                8                148
  MALE                  7                125
D25V4, continuous
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 1                 25 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-91-6849         TCGA-93-7348 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"13Q GAIN WILD-TYPE" 
D25V5, multiclass
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                1                 79
  T2               13                156
  T3                0                 22
  T4                1                 15
D25V7, multiclass
       clus
vv      13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                  11                161
  N1                   1                 57
  N2+N3                3                 49
D25V8, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               12                190
  M1                2                 14
  MX                1                 62
D25V9, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  I                  7                142
  II                 3                 58
  III                3                 54
  IV                 2                 14
D25V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1   14
  13Q GAIN WILD-TYPE   18  255
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 1                 18
  YES               14                255
D25V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      4   11
  13Q GAIN WILD-TYPE   40  233
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 4                 40
  YES               11                233

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    16  10
  14Q GAIN WILD-TYPE 157  71
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                26                228 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                10                 71 
$`14Q GAIN MUTATED`
TCGA-05-4390 TCGA-35-5375 TCGA-38-4629 TCGA-44-2659 TCGA-44-6147 TCGA-44-6779 
       37.02         8.68        28.37        17.39         7.76        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-50-6590 TCGA-50-6591 TCGA-50-6594 TCGA-50-7109 
       76.21        28.57        42.31         3.88        12.16         8.38 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 TCGA-55-6971 TCGA-55-7910 TCGA-64-5774 
        2.86         0.07        15.25         0.92         6.48        83.84 
TCGA-64-5775 TCGA-71-6725 TCGA-73-4677 TCGA-78-7159 TCGA-78-7161 TCGA-91-6828 
        0.10         2.01         1.25        40.11         7.04         1.22 
TCGA-91-6836 TCGA-91-6847 
        0.36        26.93 

$`14Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       26.30        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4487 
       18.31        18.87        17.46        17.59        13.74        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
        4.44        12.26        11.47        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       38.73        48.62        45.17        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       40.70        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        44.38        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        4.24        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        0.46         1.32         4.01       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 
       19.50        38.50        32.09         5.88        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.36         0.89         0.23        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        1.15         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.12         0.07         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.07               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             83.84             223.96 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              8.53              13.74 
[1] "0.1 - 83.8 (8.5)"   "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     21   11
  14Q GAIN WILD-TYPE  135  121
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               21                135
  MALE                 11                121
D26V4, continuous
D26V5, multiclass
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               12                 68
  T2               16                153
  T3                3                 19
  T4                1                 15
D26V7, multiclass
       clus
vv      14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0                  22                150
  N1                   5                 53
  N2+N3                3                 49
D26V8, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               21                181
  M1                1                 15
  MX                9                 54
D26V9, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  I                 19                130
  II                 7                 54
  III                4                 53
  IV                 1                 15
D26V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      0   32
  14Q GAIN WILD-TYPE   19  237
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 0                 19
  YES               32                237
D26V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      4   28
  14Q GAIN WILD-TYPE   40  216
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 4                 40
  YES               28                216

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED     8   1
  15Q GAIN WILD-TYPE 165  80
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 9                245 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 80 
$`15Q GAIN MUTATED`
TCGA-05-4420 TCGA-44-5645 TCGA-50-5944 TCGA-55-1594 TCGA-71-6725 TCGA-73-4670 
       29.95         6.84        12.26        38.73         2.01         0.46 
TCGA-78-7149 TCGA-78-7220 TCGA-78-7540 
       35.93        26.53        28.96 

$`15Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        13.74        23.05        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68        13.61         4.24        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
      163.10        27.16         5.65        19.27        20.58        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 
       88.11        31.20         8.02        53.33        10.75        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       32.68        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.46               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             38.73             223.96 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             26.53              13.15 
[1] "0.5 - 38.7 (26.5)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "2.8"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      6    4
  15Q GAIN WILD-TYPE  150  128
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                6                150
  MALE                  4                128
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 25 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-73-4659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-91-6849         TCGA-93-7348 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"15Q GAIN WILD-TYPE" 
D27V5, multiclass
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                2                 78
  T2                6                163
  T3                0                 22
  T4                1                 15
D27V7, multiclass
       clus
vv      15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0                   7                165
  N1                   0                 58
  N2+N3                2                 50
D27V8, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0                7                195
  M1                1                 15
  MX                1                 62
D27V9, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  I                  6                143
  II                 0                 61
  III                3                 54
  IV                 1                 15
D27V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      0   10
  15Q GAIN WILD-TYPE   19  259
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 0                 19
  YES               10                259
D27V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1    9
  15Q GAIN WILD-TYPE   43  235
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 43
  YES                9                235

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    22  12
  16P GAIN WILD-TYPE 151  69
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                34                220 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                12                 69 
$`16P GAIN MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-05-5423 TCGA-38-4628 TCGA-38-4629 TCGA-44-2665 
       38.07        37.02         4.96        49.02        28.37        13.15 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-6779 TCGA-44-7669 TCGA-49-4490 
       16.37         6.84         7.76        16.41        18.87        12.66 
TCGA-49-4505 TCGA-49-4512 TCGA-50-5933 TCGA-55-6980 TCGA-55-7281 TCGA-55-7573 
       14.07        29.75        77.88         2.20         0.59         0.13 
TCGA-55-7910 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-67-3772 TCGA-67-6217 
        6.48        55.40        37.02        44.38         0.59        13.87 
TCGA-69-7760 TCGA-73-4668 TCGA-73-4675 TCGA-78-7152 TCGA-78-7154 TCGA-78-7156 
        5.06        15.35         1.32        39.48        19.50        32.09 
TCGA-78-7163 TCGA-78-7542 TCGA-97-7546 TCGA-97-7547 
      223.96        10.55        31.66        47.18 

$`16P GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 
       19.10        13.15        17.39         3.39        15.78         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        3.48         0.30         3.35         9.93         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 
        2.70        63.72        32.45        36.49         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       76.21        28.11        28.57        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
       38.47         1.12         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         0.53         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        39.09        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 
       16.67        39.52         7.33         0.99         1.97         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.59         0.89         0.69         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        0.46         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7155 
       19.27        20.58        35.93        21.86        24.99        38.50 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        32.68        13.81         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        1.12         0.07         5.36        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.13               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            223.96             163.10 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            16.390             12.145 
[1] "0.1 - 224.0 (16.4)" "0.0 - 163.1 (12.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     20   18
  16P GAIN WILD-TYPE  136  114
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               20                136
  MALE                 18                114
D28V4, continuous
D28V5, multiclass
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                8                 72
  T2               22                147
  T3                5                 17
  T4                2                 14
D28V7, multiclass
       clus
vv      16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0                  19                153
  N1                  10                 48
  N2+N3                7                 45
D28V8, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               26                176
  M1                3                 13
  MX                6                 57
D28V9, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  I                 17                132
  II                11                 50
  III                6                 51
  IV                 3                 13
D28V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      3   35
  16P GAIN WILD-TYPE   16  234
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 3                 16
  YES               35                234
D28V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      8   30
  16P GAIN WILD-TYPE   36  214
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 8                 36
  YES               30                214

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    12   9
  16Q GAIN WILD-TYPE 161  72
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                21                233 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 9                 72 
$`16Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-5423 TCGA-38-4629 TCGA-44-2665 TCGA-44-5645 TCGA-44-6147 
       38.07         4.96        28.37        13.15         6.84         7.76 
TCGA-44-6779 TCGA-49-4505 TCGA-49-4512 TCGA-50-5933 TCGA-55-6980 TCGA-64-1676 
       16.41        14.07        29.75        77.88         2.20        56.81 
TCGA-64-1681 TCGA-67-6217 TCGA-69-7760 TCGA-73-4668 TCGA-78-7145 TCGA-78-7154 
       44.38        13.87         5.06        15.35        27.16        19.50 
TCGA-78-7163 TCGA-78-7542 TCGA-97-7547 
      223.96        10.55        47.18 

$`16Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48        16.37         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.74        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 
        0.92        48.49         3.88         5.46         7.76        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.69         0.10        20.65        39.09        55.40        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        0.69         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        4.01         1.25       163.10         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        39.48        24.99        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        32.68        13.81         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        1.12         0.07         5.36        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              2.20               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            223.96             163.10 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             16.41              12.26 
[1] "2.2 - 224.0 (16.4)" "0.0 - 163.1 (12.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     12   14
  16Q GAIN WILD-TYPE  144  118
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE               12                144
  MALE                 14                118
D29V4, continuous
D29V5, multiclass
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                4                 76
  T2               16                153
  T3                3                 19
  T4                2                 14
D29V7, multiclass
       clus
vv      16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0                  14                158
  N1                   7                 51
  N2+N3                3                 49
D29V8, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               21                181
  M1                1                 15
  MX                3                 60
D29V9, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  I                 14                135
  II                 8                 53
  III                3                 54
  IV                 1                 15
D29V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      1   25
  16Q GAIN WILD-TYPE   18  244
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 1                 18
  YES               25                244
D29V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      5   21
  16Q GAIN WILD-TYPE   39  223
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 5                 39
  YES               21                223

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    13   3
  17P GAIN WILD-TYPE 160  78
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                16                238 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 3                 78 
$`17P GAIN MUTATED`
TCGA-05-4382 TCGA-35-5375 TCGA-38-4628 TCGA-44-6148 TCGA-50-5935 TCGA-55-1595 
       19.92         8.68        49.02         3.12        21.47        48.62 
TCGA-55-7907 TCGA-64-1680 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-78-7149 
        0.53        37.02        20.28         1.32         4.01        35.93 
TCGA-78-7220 TCGA-86-7713 TCGA-91-6835 TCGA-95-7043 
       26.53         0.23         1.15         0.07 

$`17P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         7.76         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        39.09        55.40        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 
        1.22        41.33         0.03         1.28         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.07               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             49.02             223.96 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             14.30              13.38 
[1] "0.1 - 49.0 (14.3)"  "0.0 - 224.0 (13.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      7   10
  17P GAIN WILD-TYPE  149  122
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                7                149
  MALE                 10                122
D30V4, continuous
D30V5, multiclass
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                6                 74
  T2                9                160
  T3                1                 21
  T4                1                 15
D30V7, multiclass
       clus
vv      17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                   9                163
  N1                   5                 53
  N2+N3                3                 49
D30V8, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               12                190
  M1                2                 14
  MX                3                 60
D30V9, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  I                  7                142
  II                 4                 57
  III                4                 53
  IV                 2                 14
D30V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      4   13
  17P GAIN WILD-TYPE   15  256
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 4                 15
  YES               13                256
D30V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      4   13
  17P GAIN WILD-TYPE   40  231
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 4                 40
  YES               13                231

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    30  13
  17Q GAIN WILD-TYPE 143  68
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                43                211 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                13                 68 
$`17Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4424 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        3.98        19.92        30.02        49.02        28.37        44.61 
TCGA-44-3919 TCGA-44-6144 TCGA-44-6148 TCGA-44-6777 TCGA-44-7662 TCGA-44-7667 
        6.21         0.30         3.12        32.45         1.64        18.31 
TCGA-44-7670 TCGA-50-5935 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-55-1595 
       17.46        21.47         3.88        11.05        12.16        48.62 
TCGA-55-5899 TCGA-55-7281 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-64-1680 
        2.86         0.59         0.62         0.53         0.69        37.02 
TCGA-67-6215 TCGA-69-7760 TCGA-71-6725 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 
        0.89         5.06         2.01        29.95        20.28         1.32 
TCGA-73-4676 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7161 TCGA-78-7220 
        4.01        27.16        19.27        35.93         7.04        26.53 
TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-86-7713 TCGA-91-6835 TCGA-91-6836 
       10.75        10.55        32.68         0.23         1.15         0.36 
TCGA-95-7043 
        0.07 

$`17Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.44         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 
       16.37         6.84         3.35         9.93         7.76         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
        2.70        63.72        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        5.03        18.87        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6595 
        4.44        12.26        11.47        42.31        25.51         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73        45.17         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 
       24.99        40.54        71.05        38.47         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7910 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        6.48         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7143 
       52.57        23.38        15.35         0.46         1.25       163.10 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.65        20.58        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 
       38.50        32.09         5.88        40.11        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        31.20         8.02        53.33 
TCGA-78-7540 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 
       28.96        13.81         0.36         0.89         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.28        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        9.76         4.18         1.12         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.07               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             49.02             223.96 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             10.55              13.81 
[1] "0.1 - 49.0 (10.6)"  "0.0 - 224.0 (13.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     26   22
  17Q GAIN WILD-TYPE  130  110
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               26                130
  MALE                 22                110
D31V4, continuous
D31V5, multiclass
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1               16                 64
  T2               21                148
  T3                8                 14
  T4                3                 13
D31V7, multiclass
       clus
vv      17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0                  30                142
  N1                  11                 47
  N2+N3                6                 46
D31V8, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0               31                171
  M1                7                  9
  MX                9                 54
D31V9, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  I                 21                128
  II                12                 49
  III                7                 50
  IV                 7                  9
D31V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      6   42
  17Q GAIN WILD-TYPE   13  227
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 6                 13
  YES               42                227
D31V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     10   38
  17Q GAIN WILD-TYPE   34  206
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                10                 34
  YES               38                206

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    13   5
  18P GAIN WILD-TYPE 160  76
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                236 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 5                 76 
$`18P GAIN MUTATED`
TCGA-05-4420 TCGA-05-4430 TCGA-44-7672 TCGA-49-6761 TCGA-50-6591 TCGA-50-7109 
       29.95        25.02        13.74         0.03         3.88         8.38 
TCGA-55-6970 TCGA-64-5775 TCGA-64-5779 TCGA-69-7764 TCGA-73-4675 TCGA-73-4676 
       15.25         0.10        16.67        13.61         1.32         4.01 
TCGA-78-7147 TCGA-78-7539 TCGA-78-7542 TCGA-86-7713 TCGA-97-7546 TCGA-97-7547 
       19.27        10.75        10.55         0.23        31.66        47.18 

$`18P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
        8.98        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.46        17.59        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        42.48        40.70         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        5.06         6.12        22.68         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 
       23.38        29.95        20.28        15.35         0.46         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10        27.16         5.65        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 
       88.11        26.53        31.20         8.02        53.33        28.96 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 
       32.68        13.81         0.36         0.89         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        5.36        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.03               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             47.18             223.96 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            12.180             13.445 
[1] "0.0 - 47.2 (12.2)"  "0.0 - 224.0 (13.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     10   10
  18P GAIN WILD-TYPE  146  122
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               10                146
  MALE                 10                122
D32V4, continuous
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-75-5122         TCGA-83-5908 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7714 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
D32V5, multiclass
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                6                 74
  T2               12                157
  T3                1                 21
  T4                1                 15
D32V7, multiclass
       clus
vv      18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0                  13                159
  N1                   4                 54
  N2+N3                3                 49
D32V8, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0               14                188
  M1                1                 15
  MX                5                 58
D32V9, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  I                 10                139
  II                 4                 57
  III                5                 52
  IV                 1                 15
D32V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      1   19
  18P GAIN WILD-TYPE   18  250
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 1                 18
  YES               19                250
D32V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      4   16
  18P GAIN WILD-TYPE   40  228
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 4                 40
  YES               16                228

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    12   3
  18Q GAIN WILD-TYPE 161  78
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                15                239 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 3                 78 
$`18Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4420 TCGA-44-6778 TCGA-49-6761 TCGA-50-6591 TCGA-55-6970 
       37.02        29.95        36.49         0.03         3.88        15.25 
TCGA-64-1678 TCGA-64-5779 TCGA-69-7764 TCGA-73-4675 TCGA-73-4676 TCGA-78-7542 
       39.09        16.67        13.61         1.32         4.01        10.55 
TCGA-86-7713 TCGA-97-7546 TCGA-97-7547 
        0.23        31.66        47.18 

$`18Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 
        5.42         2.70        63.72        32.45        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        42.48        40.70         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
        0.10        56.81        20.65        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 
       13.87         5.06         6.12        22.68         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       53.33        10.75        28.96        32.68        13.81         0.36 
TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.89         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7552 TCGA-97-7553 
        4.18         1.12         0.07         5.36        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.03               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             47.18             223.96 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             15.25              13.15 
[1] "0.0 - 47.2 (15.2)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
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        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
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        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      7    8
  18Q GAIN WILD-TYPE  149  124
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                7                149
  MALE                  8                124
D33V4, continuous
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-75-5122         TCGA-83-5908 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7714 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
D33V5, multiclass
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                4                 76
  T2               10                159
  T3                1                 21
  T4                0                 16
D33V7, multiclass
       clus
vv      18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                  10                162
  N1                   2                 56
  N2+N3                3                 49
D33V8, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0                9                193
  M1                1                 15
  MX                5                 58
D33V9, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  I                  8                141
  II                 2                 59
  III                4                 53
  IV                 1                 15
D33V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      1   14
  18Q GAIN WILD-TYPE   18  255
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 1                 18
  YES               14                255
D33V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      4   11
  18Q GAIN WILD-TYPE   40  233
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 4                 40
  YES               11                233

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED     4   0
  19P GAIN WILD-TYPE 169  81
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                250 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 0                 81 
$`19P GAIN MUTATED`
TCGA-44-2662 TCGA-44-2665 TCGA-53-7624 TCGA-73-4675 
       15.78        13.15        35.11         1.32 

$`19P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       13.15        17.39         3.39         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        4.01         1.25       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              1.32               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             35.11             223.96 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            14.465             13.380 
[1] "1.3 - 35.1 (14.5)"  "0.0 - 224.0 (13.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr="     "9100000"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      2    2
  19P GAIN WILD-TYPE  154  130
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                2                154
  MALE                  2                130
D34V4, continuous
D34V5, multiclass
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                0                 80
  T2                3                166
  T3                1                 21
  T4                0                 16
D34V7, multiclass
       clus
vv      19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0                   2                170
  N1                   2                 56
  N2+N3                0                 52
D34V8, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0                3                199
  M1                1                 15
  MX                0                 63
D34V9, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  I                  1                148
  II                 1                 60
  III                1                 56
  IV                 1                 15
D34V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      0    4
  19P GAIN WILD-TYPE   19  265
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 0                 19
  YES                4                265
D34V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      2    2
  19P GAIN WILD-TYPE   42  242
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 2                 42
  YES                2                242

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED     9   2
  19Q GAIN WILD-TYPE 164  79
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                11                243 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 2                 79 
$`19Q GAIN MUTATED`
TCGA-35-5375 TCGA-38-4631 TCGA-44-2662 TCGA-44-6776 TCGA-50-6594 TCGA-53-7624 
        8.68        11.64        15.78        63.72        12.16        35.11 
TCGA-55-7907 TCGA-69-7764 TCGA-73-4675 TCGA-91-6830 TCGA-95-7043 
        0.53        13.61         1.32         0.03         0.07 

$`19Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
        2.70        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72         8.38        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
        0.69        13.87         5.06         6.12        22.68         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        0.46         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       32.68        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
       41.33         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 
        0.92         1.02         9.76         4.18         1.12         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             63.72             223.96 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             11.64              13.74 
[1] "0.0 - 63.7 (11.6)"  "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      6    5
  19Q GAIN WILD-TYPE  150  127
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                6                150
  MALE                  5                127
D35V4, continuous
[1] "Remove cluster labels:" "19Q GAIN MUTATED"      
clus
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 1                 25 
        TCGA-35-4122         TCGA-35-4123         TCGA-55-7283 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7725         TCGA-55-7910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-91-6849         TCGA-93-7348 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"19Q GAIN WILD-TYPE" 
D35V5, multiclass
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                4                 76
  T2                5                164
  T3                2                 20
  T4                0                 16
D35V7, multiclass
       clus
vv      19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0                   6                166
  N1                   3                 55
  N2+N3                2                 50
D35V8, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0                6                196
  M1                1                 15
  MX                4                 59
D35V9, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  I                  5                144
  II                 2                 59
  III                3                 54
  IV                 1                 15
D35V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      0   11
  19Q GAIN WILD-TYPE   19  258
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 0                 19
  YES               11                258
D35V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      1   10
  19Q GAIN WILD-TYPE   43  234
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 1                 43
  YES               10                234

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    24  14
  20P GAIN WILD-TYPE 149  67
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                38                216 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                14                 67 
$`20P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4417 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 TCGA-05-5425 
        3.98        14.93        30.02        25.02        25.02         2.96 
TCGA-35-5375 TCGA-38-4629 TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-7660 
        8.68        28.37        16.37         6.84         7.76         5.33 
TCGA-44-7669 TCGA-44-7671 TCGA-50-5045 TCGA-50-5931 TCGA-50-5946 TCGA-50-6590 
       18.87        17.59        71.47         8.78        11.47        42.31 
TCGA-50-6591 TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 TCGA-55-6969 TCGA-55-6970 
        3.88        23.05         2.86         0.07        40.70        15.25 
TCGA-64-1677 TCGA-67-3771 TCGA-69-7763 TCGA-71-6725 TCGA-73-4662 TCGA-78-7153 
       20.65         1.97        22.68         2.01        29.95        24.99 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-91-6836 
       38.50       223.96        26.53         8.02        53.33         0.36 
TCGA-91-6847 TCGA-97-7937 
       26.93         5.95 

$`20P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        26.01        24.00        15.02         1.02         4.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 
        8.32         6.44         6.21         4.60         3.48         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.31        17.46        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93         0.03        20.48        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 
        8.38        35.11        31.89        13.74        38.73        48.62 
TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 
       45.17        32.61         0.79        42.48         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
        0.10        56.81        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 
       13.87         5.06         6.12        13.61         4.24        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       35.93        21.86        39.48        19.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7535 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       31.20        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.28         1.15         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       48.53        43.76         8.65         0.59         0.72         8.22 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            223.96             163.10 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            16.980             12.825 
[1] "0.1 - 224.0 (17.0)" "0.0 - 163.1 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     21   19
  20P GAIN WILD-TYPE  135  113
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               21                135
  MALE                 19                113
D36V4, continuous
D36V5, multiclass
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               10                 70
  T2               26                143
  T3                3                 19
  T4                0                 16
D36V7, multiclass
       clus
vv      20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0                  27                145
  N1                   6                 52
  N2+N3                5                 47
D36V8, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               28                174
  M1                1                 15
  MX                8                 55
D36V9, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  I                 27                122
  II                 5                 56
  III                6                 51
  IV                 1                 15
D36V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      3   37
  20P GAIN WILD-TYPE   16  232
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 3                 16
  YES               37                232
D36V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      1   39
  20P GAIN WILD-TYPE   43  205
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 1                 43
  YES               39                205

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    27  17
  20Q GAIN WILD-TYPE 146  64
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                44                210 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                17                 64 
$`20Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4397 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
        3.98        24.03        29.95        30.02        25.02        25.02 
TCGA-05-5423 TCGA-05-5425 TCGA-35-5375 TCGA-38-4629 TCGA-44-5645 TCGA-44-6147 
        4.96         2.96         8.68        28.37         6.84         7.76 
TCGA-44-7660 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-49-4487 TCGA-50-5931 
        5.33        18.87        17.46        17.59        28.11         8.78 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 
       11.47        42.31         3.88        23.05        38.73         0.07 
TCGA-55-6969 TCGA-55-6970 TCGA-55-7910 TCGA-64-1677 TCGA-64-1681 TCGA-64-5774 
       40.70        15.25         6.48        20.65        44.38        83.84 
TCGA-67-3771 TCGA-71-6725 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 
        1.97         2.01        24.99        19.50        38.50       223.96 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-91-6836 TCGA-91-6847 TCGA-91-7771 
       26.53         8.02        53.33         0.36        26.93         1.02 
TCGA-95-7567 TCGA-97-7937 
        5.36         5.95 

$`20Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07        19.92        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 
        8.02        20.05         2.96        14.93         8.98        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 
       26.01        24.00        15.02         1.02         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48        16.37         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       13.74        76.21        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6592 TCGA-50-6593 
       15.12         9.37         4.44        12.26        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 
       31.89        13.74        48.62        45.17         2.86        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
        0.79        42.48         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 
        0.62         0.53         0.69         0.10        56.81        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       55.40        37.02         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        4.24        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
        8.48        88.11        31.20        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       32.68        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 
       41.33         0.03         1.28         1.15         4.18         0.92 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 
        9.76         4.18         1.12         0.07        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       48.53        43.76         8.65         0.59         0.72         8.22 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.07               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            223.96             163.10 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            18.230             12.825 
[1] "0.1 - 224.0 (18.2)" "0.0 - 163.1 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     22   25
  20Q GAIN WILD-TYPE  134  107
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               22                134
  MALE                 25                107
D37V4, continuous
D37V5, multiclass
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               10                 70
  T2               31                138
  T3                5                 17
  T4                0                 16
D37V7, multiclass
       clus
vv      20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0                  29                143
  N1                   8                 50
  N2+N3                8                 44
D37V8, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               35                167
  M1                1                 15
  MX                9                 54
D37V9, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  I                 26                123
  II                10                 51
  III                9                 48
  IV                 1                 15
D37V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      1   46
  20Q GAIN WILD-TYPE   18  223
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 1                 18
  YES               46                223
D37V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      2   45
  20Q GAIN WILD-TYPE   42  199
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 2                 42
  YES               45                199

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    11  11
  21Q GAIN WILD-TYPE 162  70
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                22                232 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                11                 70 
$`21Q GAIN MUTATED`
TCGA-05-5423 TCGA-38-4628 TCGA-38-6178 TCGA-44-6147 TCGA-49-4488 TCGA-49-4501 
        4.96        49.02         5.19         7.76        28.57        46.72 
TCGA-49-4512 TCGA-50-5941 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-55-7914 
       29.75         9.37        12.16        33.37         0.72         0.10 
TCGA-64-1678 TCGA-64-1680 TCGA-67-3771 TCGA-71-6725 TCGA-73-4677 TCGA-78-7147 
       39.09        37.02         1.97         2.01         1.25        19.27 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7535 TCGA-78-7542 
       38.50       223.96        31.20        10.55 

$`21Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        28.37        35.28        11.64        44.61 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 
       13.74        76.21        28.11        12.66        35.54        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       11.05         6.21         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
        0.69        56.81        20.65        55.40        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 
        5.06         6.12        22.68        13.61         4.24        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 
        4.01       163.10        27.16         5.65        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       21.86        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 
       26.53         8.02        53.33        10.75        28.96        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.10               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            223.96             163.10 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            15.715             13.380 
[1] "0.1 - 224.0 (15.7)" "0.0 - 163.1 (13.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
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        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     18    8
  21Q GAIN WILD-TYPE  138  124
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE               18                138
  MALE                  8                124
D38V4, continuous
[1] "Remove cluster labels:" "21Q GAIN MUTATED"      
clus
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-64-1677         TCGA-64-1681 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-73-4659         TCGA-73-4662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4676 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-75-5122         TCGA-83-5908         TCGA-86-7701 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
D38V5, multiclass
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                7                 73
  T2               18                151
  T3                1                 21
  T4                0                 16
D38V7, multiclass
       clus
vv      21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                  13                159
  N1                   6                 52
  N2+N3                6                 46
D38V8, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0               21                181
  M1                1                 15
  MX                3                 60
D38V9, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  I                 13                136
  II                 7                 54
  III                5                 52
  IV                 1                 15
D38V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1   25
  21Q GAIN WILD-TYPE   18  244
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 1                 18
  YES               25                244
D38V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      6   20
  21Q GAIN WILD-TYPE   38  224
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 6                 38
  YES               20                224

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED     6   5
  22Q GAIN WILD-TYPE 167  76
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                11                243 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 5                 76 
$`22Q GAIN MUTATED`
TCGA-05-4420 TCGA-38-4625 TCGA-44-7670 TCGA-49-4490 TCGA-50-5931 TCGA-50-6594 
       29.95        47.61        17.46        12.66         8.78        12.16 
TCGA-55-1592 TCGA-55-7907 TCGA-73-4675 TCGA-78-7150 TCGA-91-6847 
       23.05         0.53         1.32        21.86        26.93 

$`22Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 
       17.59        13.74        76.21        28.11        28.57        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 
        0.72         8.38        35.11        31.89        13.74        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        1.78         0.62         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        0.46         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        35.93        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15         0.36         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.53               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             47.61             223.96 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             17.46              13.15 
[1] "0.5 - 47.6 (17.5)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      8    6
  22Q GAIN WILD-TYPE  148  126
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                8                148
  MALE                  6                126
D39V4, continuous
D39V5, multiclass
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                1                 79
  T2               10                159
  T3                3                 19
  T4                0                 16
D39V7, multiclass
       clus
vv      22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0                   5                167
  N1                   6                 52
  N2+N3                3                 49
D39V8, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0               12                190
  M1                0                 16
  MX                2                 61
D39V9, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  I                  5                144
  II                 5                 56
  III                4                 53
  IV                 0                 16
D39V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      1   13
  22Q GAIN WILD-TYPE   18  256
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 1                 18
  YES               13                256
D39V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      5    9
  22Q GAIN WILD-TYPE   39  235
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 5                 39
  YES                9                235

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED     8   1
  XQ GAIN WILD-TYPE 165  80
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9               245 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                1                80 
$`XQ GAIN MUTATED`
TCGA-05-4426 TCGA-44-2659 TCGA-50-5933 TCGA-55-6543 TCGA-55-7907 TCGA-64-1676 
       26.01        17.39        77.88         0.07         0.53        56.81 
TCGA-78-7539 TCGA-95-7043 TCGA-95-7567 
       10.75         0.07         5.36 

$`XQ GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        2.86        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 
        1.28         1.02         0.79         1.78         0.62         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.69         0.10        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       13.61         4.24         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        4.18         1.12        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.07              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            77.88            223.96 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            10.75             13.61 
[1] "0.1 - 77.9 (10.8)"  "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "3.5"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      5    6
  XQ GAIN WILD-TYPE  151  126
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               5               151
  MALE                 6               126
D40V4, continuous
D40V5, multiclass
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               4                76
  T2               6               163
  T3               0                22
  T4               1                15
D40V7, multiclass
       clus
vv      XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0                  6               166
  N1                  3                55
  N2+N3               2                50
D40V8, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0               7               195
  M1               1                15
  MX               2                61
D40V9, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  I                 5               144
  II                3                58
  III               1                56
  IV                1                15
D40V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      1   10
  XQ GAIN WILD-TYPE   18  259
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                1                18
  YES              10               259
D40V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      3    8
  XQ GAIN WILD-TYPE   41  236
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                3                41
  YES               8               236

Clustering(41) Variable = 1p loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    11   6
  1P LOSS WILD-TYPE 162  75
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               17               237 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                6                75 
$`1P LOSS MUTATED`
TCGA-05-4250 TCGA-44-5643 TCGA-44-6144 TCGA-44-7660 TCGA-50-5051 TCGA-50-5935 
        3.98         3.48         0.30         5.33        14.96        21.47 
TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 TCGA-55-6972 TCGA-64-5774 TCGA-73-4677 
        8.45        12.16         8.38        48.49        83.84         1.25 
TCGA-78-7146 TCGA-78-7149 TCGA-78-7153 TCGA-95-7043 TCGA-95-7567 
        5.65        35.93        24.99         0.07         5.36 

$`1P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       10.22         8.32         6.44         6.21         4.60        16.37 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 
        8.05         9.27         8.78        35.87        77.88        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 
       25.51        11.05         6.21        33.37         0.72        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       55.40        37.02        44.38         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 
      163.10        27.16        19.27        20.58        21.86        39.48 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       32.68        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.07              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            83.84            223.96 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             8.38             13.74 
[1] "0.1 - 83.8 (8.4)"   "0.0 - 224.0 (13.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      8   13
  1P LOSS WILD-TYPE  148  119
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               8               148
  MALE                13               119
D41V4, continuous
D41V5, multiclass
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1               5                75
  T2              13               156
  T3               2                20
  T4               1                15
D41V7, multiclass
       clus
vv      1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0                 13               159
  N1                  3                55
  N2+N3               5                47
D41V8, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0              18               184
  M1               0                16
  MX               3                60
D41V9, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  I                13               136
  II                1                60
  III               7                50
  IV                0                16
D41V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3   18
  1P LOSS WILD-TYPE   16  251
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                3                16
  YES              18               251
D41V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3   18
  1P LOSS WILD-TYPE   41  226
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                3                41
  YES              18               226

Clustering(42) Variable = 1q loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     3   4
  1Q LOSS WILD-TYPE 170  77
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               247 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                4                77 
$`1Q LOSS MUTATED`
TCGA-44-5643 TCGA-50-5935 TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 TCGA-78-7146 
        3.48        21.47         8.45        12.16         8.38         5.65 
TCGA-95-7043 
        0.07 

$`1Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        8.78        35.87        77.88        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        1.25       163.10        27.16        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        9.76         4.18         1.12         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.07              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            21.47            223.96 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             8.38             13.74 
[1] "0.1 - 21.5 (8.4)"   "0.0 - 224.0 (13.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "6.3"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      4    5
  1Q LOSS WILD-TYPE  152  127
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               4               152
  MALE                 5               127
D42V4, continuous
D42V5, multiclass
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               3                77
  T2               5               164
  T3               1                21
  T4               0                16
D42V7, multiclass
       clus
vv      1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0                  5               167
  N1                  0                58
  N2+N3               4                48
D42V8, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               7               195
  M1               0                16
  MX               2                61
D42V9, multiclass
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  I                 5               144
  II                0                61
  III               4                53
  IV                0                16
D42V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      2    7
  1Q LOSS WILD-TYPE   17  262
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                2                17
  YES               7               262
D42V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    8
  1Q LOSS WILD-TYPE   43  236
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                43
  YES               8               236

Clustering(43) Variable = 2p loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     2   0
  2P LOSS WILD-TYPE 171  81
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2               252 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                0                81 
$`2P LOSS MUTATED`
TCGA-44-2665 TCGA-50-7109 
       13.15         8.38 

$`2P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.12         0.07         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             8.38              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            13.15            223.96 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           10.765            13.675 
[1] "8.4 - 13.2 (10.8)"  "0.0 - 224.0 (13.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2               252 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5644        TCGA-44-5645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-44-7659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7660        TCGA-44-7661        TCGA-44-7662        TCGA-44-7667 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7669        TCGA-44-7670        TCGA-44-7671        TCGA-44-7672 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7624        TCGA-53-7626        TCGA-53-7813        TCGA-55-1592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-55-5899 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6543        TCGA-55-6642        TCGA-55-6712        TCGA-55-6968 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6969        TCGA-55-6970        TCGA-55-6971        TCGA-55-6972 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6975        TCGA-55-6978        TCGA-55-6979        TCGA-55-6980 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6981        TCGA-55-6982        TCGA-55-6983        TCGA-55-6984 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6985        TCGA-55-6986        TCGA-55-6987        TCGA-55-7281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7283        TCGA-55-7573        TCGA-55-7574        TCGA-55-7576 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-97-7546 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
D43V2, continuous
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2               255 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5644        TCGA-44-5645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-44-7659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7660        TCGA-44-7661        TCGA-44-7662        TCGA-44-7667 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7669        TCGA-44-7670        TCGA-44-7671        TCGA-44-7672 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-49-6767        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1596        TCGA-55-6642        TCGA-55-6968 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6969        TCGA-55-6970        TCGA-55-6971        TCGA-55-6972 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6981        TCGA-55-6985        TCGA-55-6987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7570        TCGA-55-7573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-78-7143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-6562        TCGA-86-6851        TCGA-86-7701        TCGA-86-7711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-91-6828        TCGA-91-6829 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6840        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    1
  2P LOSS WILD-TYPE  154  131
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               2               154
  MALE                 1               131
D43V4, continuous
D43V5, multiclass
D43V6, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               1                79
  T2               2               167
  T3               0                22
  T4               0                16
D43V7, multiclass
       clus
vv      2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0                  2               170
  N1                  1                57
  N2+N3               0                52
D43V8, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0               2               200
  M1               0                16
  MX               1                62
D43V9, multiclass
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  I                 2               147
  II                1                60
  III               0                57
  IV                0                16
D43V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      0    3
  2P LOSS WILD-TYPE   19  266
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                0                19
  YES               3               266
D43V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1    2
  2P LOSS WILD-TYPE   43  242
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                1                43
  YES               2               242

Clustering(44) Variable = 3p loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    34  15
  3P LOSS WILD-TYPE 139  66
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               49               205 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               15                66 
$`3P LOSS MUTATED`
TCGA-05-4397 TCGA-05-4432 TCGA-05-5715 TCGA-38-6178 TCGA-44-6144 TCGA-44-6776 
       24.03        25.02         2.04         5.19         0.30        63.72 
TCGA-44-7660 TCGA-44-7670 TCGA-49-4505 TCGA-49-4514 TCGA-50-5931 TCGA-50-5932 
        5.33        17.46        14.07        43.20         8.78        35.87 
TCGA-50-5935 TCGA-50-5939 TCGA-50-6591 TCGA-50-6594 TCGA-50-7109 TCGA-53-7624 
       21.47        15.12         3.88        12.16         8.38        35.11 
TCGA-53-7626 TCGA-55-1594 TCGA-55-1596 TCGA-55-6968 TCGA-55-6975 TCGA-55-7283 
       31.89        38.73        45.17        42.48         3.88         1.12 
TCGA-55-7576 TCGA-55-7907 TCGA-55-7910 TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 
        1.32         0.53         6.48         0.10        56.81        39.09 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 
       83.84        16.67         7.33         0.99         0.59        13.87 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-78-7146 TCGA-78-7148 TCGA-78-7167 
       29.95        20.28         0.46         5.65        20.58        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-91-6847 TCGA-91-7771 TCGA-95-7039 
       31.20         8.02        10.75        26.93         1.02         1.12 
TCGA-95-7043 
        0.07 

$`3P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       15.02         1.02         4.96         2.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-7271 
       49.02        28.37        35.28        11.64        44.61        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 
        6.21         4.60         3.48        16.37         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.87        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       29.75        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 
       49.28         8.05         9.27        77.88         8.45         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 
        6.21        33.37         0.72        13.74        23.05        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 
        2.86         0.07        32.61         0.79        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92        48.49         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.59         0.13         3.12         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
        1.78         0.62         0.69        20.65        55.40        37.02 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 
       44.38         0.10        30.44        39.52         1.97         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
       13.61         4.24         2.01        52.57        23.38        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        1.32         4.01         1.25       163.10        27.16        19.27 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
      223.96         8.48        26.53        53.33        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       32.68        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
       41.33         0.03         1.28         1.15         0.36         4.18 
TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        0.92         9.76         4.18         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.07              0.03 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            88.11            223.96 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            13.87             13.15 
[1] "0.1 - 88.1 (13.9)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     29   27
  3P LOSS WILD-TYPE  127  105
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              29               127
  MALE                27               105
D44V4, continuous
D44V5, multiclass
D44V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              17                63
  T2              35               134
  T3               4                18
  T4               0                16
D44V7, multiclass
       clus
vv      3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0                 33               139
  N1                 15                43
  N2+N3               8                44
D44V8, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0              37               165
  M1               6                10
  MX              11                52
D44V9, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  I                22               127
  II               21                40
  III               7                50
  IV                5                11
D44V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      4   52
  3P LOSS WILD-TYPE   15  217
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                4                15
  YES              52               217
D44V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     11   45
  3P LOSS WILD-TYPE   33  199
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               11                33
  YES              45               199

Clustering(45) Variable = 3q loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    18   8
  3Q LOSS WILD-TYPE 155  73
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               26               228 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                8                73 
$`3Q LOSS MUTATED`
TCGA-05-4432 TCGA-05-5715 TCGA-44-6144 TCGA-44-6776 TCGA-50-5932 TCGA-50-5935 
       25.02         2.04         0.30        63.72        35.87        21.47 
TCGA-50-6591 TCGA-50-6594 TCGA-50-7109 TCGA-55-6975 TCGA-55-7283 TCGA-55-7576 
        3.88        12.16         8.38         3.88         1.12         1.32 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-67-3770 TCGA-67-3772 TCGA-73-4662 
       39.09        83.84        16.67         0.99         0.59        29.95 
TCGA-78-7148 TCGA-78-7167 TCGA-78-7535 TCGA-78-7539 TCGA-86-7713 TCGA-91-6847 
       20.58        88.11        31.20        10.75         0.23        26.93 
TCGA-91-7771 TCGA-95-7039 
        1.02         1.12 

$`3Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
        2.70        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 
       49.28         8.05         9.27         8.78        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 
       25.51        11.05         6.21        33.37         0.72        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 
       38.47         0.59         0.13         3.12         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
        0.10        56.81        20.65        55.40        37.02        44.38 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 
        0.10        30.44        39.52         7.33         1.97         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 
      163.10        27.16         5.65        19.27        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       26.53         8.02        53.33        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
       13.81         0.36         0.89         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 
        1.28         1.15         0.36         4.18         0.92         9.76 
TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        4.18         0.07         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.23              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            88.11            223.96 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           11.455            13.675 
[1] "0.2 - 88.1 (11.5)"  "0.0 - 224.0 (13.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     14   16
  3Q LOSS WILD-TYPE  142  116
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              14               142
  MALE                16               116
D45V4, continuous
D45V5, multiclass
D45V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               7                73
  T2              19               150
  T3               4                18
  T4               0                16
D45V7, multiclass
       clus
vv      3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0                 22               150
  N1                  5                53
  N2+N3               3                49
D45V8, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              22               180
  M1               2                14
  MX               5                58
D45V9, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  I                15               134
  II               10                51
  III               2                55
  IV                2                14
D45V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      2   28
  3Q LOSS WILD-TYPE   17  241
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                2                17
  YES              28               241
D45V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      6   24
  3Q LOSS WILD-TYPE   38  220
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                6                38
  YES              24               220

Clustering(46) Variable = 4p loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    20   5
  4P LOSS WILD-TYPE 153  76
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               25               229 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                5                76 
$`4P LOSS MUTATED`
TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 TCGA-35-5375 TCGA-38-4625 
       24.03        47.05        20.05        29.95         8.68        47.61 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6146 TCGA-44-7660 TCGA-50-5051 TCGA-50-5936 
        3.48        16.37         9.93         5.33        14.96         8.45 
TCGA-53-7626 TCGA-55-1596 TCGA-55-6968 TCGA-55-7910 TCGA-64-5778 TCGA-64-5779 
       31.89        45.17        42.48         6.48        30.44        16.67 
TCGA-64-5815 TCGA-73-4659 TCGA-73-4670 TCGA-78-7536 TCGA-86-7713 TCGA-91-6831 
        7.33        23.38         0.46         8.02         0.23         1.28 
TCGA-95-7043 
        0.07 

$`4P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
        8.02         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        5.95        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         3.35         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        0.72         8.38        35.11        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       48.62         2.86         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.53         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 
       55.40        37.02        44.38        83.84         0.10        39.52 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        4.24         2.01        52.57        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       31.20        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
       13.81         0.36         0.89         1.22        41.33         0.03 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        9.76         4.18         1.12         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.07              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            47.61            223.96 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            14.96             13.15 
[1] "0.1 - 47.6 (15.0)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     10   16
  4P LOSS WILD-TYPE  146  116
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              10               146
  MALE                16               116
D46V4, continuous
D46V5, multiclass
D46V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1               4                76
  T2              20               149
  T3               1                21
  T4               1                15
D46V7, multiclass
       clus
vv      4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0                 14               158
  N1                  4                54
  N2+N3               8                44
D46V8, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0              19               183
  M1               2                14
  MX               4                59
D46V9, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  I                11               138
  II                6                55
  III               8                49
  IV                1                15
D46V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      3   23
  4P LOSS WILD-TYPE   16  246
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                3                16
  YES              23               246
D46V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      5   21
  4P LOSS WILD-TYPE   39  223
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                5                39
  YES              21               223

Clustering(47) Variable = 4q loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    21   8
  4Q LOSS WILD-TYPE 152  73
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               29               225 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                8                73 
$`4Q LOSS MUTATED`
TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 TCGA-35-5375 TCGA-44-5643 TCGA-44-5644 
       47.05        20.05        29.95         8.68         3.48        16.37 
TCGA-44-7660 TCGA-50-5051 TCGA-50-5936 TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 
        5.33        14.96         8.45         8.38        23.05        38.73 
TCGA-55-1596 TCGA-55-6968 TCGA-55-7910 TCGA-64-5778 TCGA-64-5779 TCGA-69-7764 
       45.17        42.48         6.48        30.44        16.67        13.61 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
       23.38        29.95         0.46        88.11        31.20         8.02 
TCGA-86-7713 TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 TCGA-95-7043 
        0.23        41.33         1.28        26.93         0.07 

$`4Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       24.03         8.02         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21        33.37         0.72        35.11        31.89 
TCGA-53-7813 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       13.74        48.62         2.86         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         0.53         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
       22.68         4.24         2.01        52.57        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 
        7.04       104.15       223.96         8.48        26.53        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
        0.89         1.22         0.03         1.15         0.36         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 
        0.92         1.02         9.76         4.18         1.12         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.07              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            88.11            223.96 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            16.67             12.66 
[1] "0.1 - 88.1 (16.7)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     10   21
  4Q LOSS WILD-TYPE  146  111
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              10               146
  MALE                21               111
D47V4, continuous
D47V5, multiclass
D47V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1               6                74
  T2              23               146
  T3               0                22
  T4               2                14
D47V7, multiclass
       clus
vv      4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0                 20               152
  N1                  1                57
  N2+N3              10                42
D47V8, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0              20               182
  M1               3                13
  MX               7                56
D47V9, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  I                17               132
  II                2                59
  III              10                47
  IV                2                14
D47V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      4   27
  4Q LOSS WILD-TYPE   15  242
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                4                15
  YES              27               242
D47V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      5   26
  4Q LOSS WILD-TYPE   39  218
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                5                39
  YES              26               218

Clustering(48) Variable = 5p loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     5   2
  5P LOSS WILD-TYPE 168  79
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                7               247 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                79 
$`5P LOSS MUTATED`
TCGA-55-1596 TCGA-55-6968 TCGA-55-6975 TCGA-64-5779 TCGA-78-7161 TCGA-95-7043 
       45.17        42.48         3.88        16.67         7.04         0.07 
TCGA-95-7567 
        5.36 

$`5P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       18.31        18.87        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92        48.49         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        6.12        22.68        13.61         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        4.01         1.25       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 
       38.50        32.09         5.88        40.11        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-97-7546 TCGA-97-7547 
        1.02         9.76         4.18         1.12        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.07              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            45.17            223.96 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             7.04             13.61 
[1] "0.1 - 45.2 (7.0)"   "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      2    6
  5P LOSS WILD-TYPE  154  126
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               2               154
  MALE                 6               126
D48V4, continuous
D48V5, multiclass
D48V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               3                77
  T2               4               165
  T3               1                21
  T4               0                16
D48V7, multiclass
       clus
vv      5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0                  4               168
  N1                  3                55
  N2+N3               1                51
D48V8, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0               6               196
  M1               1                15
  MX               1                62
D48V9, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  I                 4               145
  II                3                58
  III               1                56
  IV                0                16
D48V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0    8
  5P LOSS WILD-TYPE   19  261
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                0                19
  YES               8               261
D48V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3    5
  5P LOSS WILD-TYPE   41  239
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                3                41
  YES               5               239

Clustering(49) Variable = 5q loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    26   8
  5Q LOSS WILD-TYPE 147  73
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               34               220 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                8                73 
$`5Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4427 TCGA-05-5715 TCGA-35-4123 TCGA-38-4630 
        9.96        20.05        26.01         2.04         5.95        35.28 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6146 TCGA-44-7660 TCGA-44-7670 
        3.48        16.37         0.30         9.93         5.33        17.46 
TCGA-49-4505 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 
       14.07        23.05        38.73        45.17         2.86        42.48 
TCGA-55-6975 TCGA-55-7281 TCGA-64-1676 TCGA-64-5778 TCGA-64-5779 TCGA-69-7764 
        3.88         0.59        56.81        30.44        16.67        13.61 
TCGA-69-7765 TCGA-73-4668 TCGA-78-7149 TCGA-78-7150 TCGA-78-7161 TCGA-78-7167 
        4.24        15.35        35.93        21.86         7.04        88.11 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7937 
        1.12         0.07         5.36         5.95 

$`5Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         2.96         0.99         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        6.84         3.35         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        1.64        18.31        18.87        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       28.11        28.57        12.66        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 
        8.38        35.11        31.89        13.74        48.62         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        40.70        15.25         0.92        48.49 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 
       24.99        40.54        71.05        38.47         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 
        0.62         0.53         6.48         0.69         0.10        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       22.68         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        20.58        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 
       38.50        32.09         5.88        40.11        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        9.76         4.18        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         0.59         0.72         8.22 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.07              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            88.11            223.96 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            13.84             13.15 
[1] "0.1 - 88.1 (13.8)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     12   27
  5Q LOSS WILD-TYPE  144  105
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              12               144
  MALE                27               105
D49V4, continuous
D49V5, multiclass
D49V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              11                69
  T2              22               147
  T3               3                19
  T4               3                13
D49V7, multiclass
       clus
vv      5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0                 24               148
  N1                 12                46
  N2+N3               3                49
D49V8, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              29               173
  M1               2                14
  MX               5                58
D49V9, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  I                19               130
  II               12                49
  III               5                52
  IV                2                14
D49V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      1   38
  5Q LOSS WILD-TYPE   18  231
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                1                18
  YES              38               231
D49V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      9   30
  5Q LOSS WILD-TYPE   35  214
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                9                35
  YES              30               214

Clustering(50) Variable = 6p loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    13   8
  6P LOSS WILD-TYPE 160  73
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               21               233 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                8                73 
$`6P LOSS MUTATED`
TCGA-05-4390 TCGA-35-4123 TCGA-38-4632 TCGA-49-4505 TCGA-49-4514 TCGA-50-5051 
       37.02         5.95        44.61        14.07        43.20        14.96 
TCGA-50-5932 TCGA-55-6968 TCGA-55-6972 TCGA-55-7576 TCGA-64-1676 TCGA-69-7760 
       35.87        42.48        48.49         1.32        56.81         5.06 
TCGA-73-4675 TCGA-78-7146 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7535 
        1.32         5.65        39.48        24.99        19.50        31.20 
TCGA-78-7536 TCGA-95-7043 TCGA-97-7547 
        8.02         0.07        47.18 

$`6P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        8.38        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        6.48         0.69         0.10        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69        13.87         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       13.61         4.24         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       20.28        15.35         0.46         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 
       27.16        19.27        20.58        35.93        21.86        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 
      223.96         8.48        88.11        26.53        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        4.18         1.12         5.36        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.07              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            56.81            223.96 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            24.99             12.66 
[1] "0.1 - 56.8 (25.0)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      8   15
  6P LOSS WILD-TYPE  148  117
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               8               148
  MALE                15               117
D50V4, continuous
[1] "Remove cluster labels:" "6P LOSS MUTATED"       
clus
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                1                25 
       TCGA-35-4122        TCGA-35-5375        TCGA-55-7283        TCGA-55-7573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-91-6849        TCGA-93-7348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-99-7458 
"6P LOSS WILD-TYPE" 
D50V5, multiclass
D50V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               5                75
  T2              14               155
  T3               3                19
  T4               1                15
D50V7, multiclass
       clus
vv      6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0                 13               159
  N1                  4                54
  N2+N3               6                46
D50V8, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              19               183
  M1               2                14
  MX               2                61
D50V9, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  I                11               138
  II                4                57
  III               7                50
  IV                1                15
D50V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      2   21
  6P LOSS WILD-TYPE   17  248
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                2                17
  YES              21               248
D50V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      3   20
  6P LOSS WILD-TYPE   41  224
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                3                41
  YES              20               224

Clustering(51) Variable = 6q loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    35  18
  6Q LOSS WILD-TYPE 138  63
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               53               201 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               18                63 
$`6Q LOSS MUTATED`
TCGA-05-4390 TCGA-05-5429 TCGA-35-4123 TCGA-38-4632 TCGA-44-2659 TCGA-44-2666 
       37.02         0.99         5.95        44.61        17.39         3.19 
TCGA-44-5644 TCGA-44-6779 TCGA-44-7659 TCGA-49-4488 TCGA-49-4494 TCGA-49-4505 
       16.37        16.41         9.80        28.57        35.54        14.07 
TCGA-49-4514 TCGA-50-5051 TCGA-50-5932 TCGA-50-5935 TCGA-50-5942 TCGA-50-6594 
       43.20        14.96        35.87        21.47         4.44        12.16 
TCGA-55-6543 TCGA-55-6968 TCGA-55-6972 TCGA-55-7283 TCGA-55-7576 TCGA-55-7725 
        0.07        42.48        48.49         1.12         1.32         1.28 
TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 TCGA-64-5774 
        0.62         0.69         0.10        56.81        39.09        83.84 
TCGA-64-5779 TCGA-67-6216 TCGA-69-7760 TCGA-73-4666 TCGA-73-4675 TCGA-78-7146 
       16.67         0.69         5.06        20.28         1.32         5.65 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       35.93        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-86-7713 
       31.20         8.02        53.33        28.96        32.68         0.23 
TCGA-91-6831 TCGA-95-7043 TCGA-97-7547 TCGA-97-7554 TCGA-97-7938 
        1.28         0.07        47.18         8.65         0.59 

$`6Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 
       49.02        28.37        35.28        11.64         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4501 
       17.59        13.74        76.21        28.11        12.66        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        29.75        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 
       77.88         8.45        15.12         9.37        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         2.86        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7727 
       71.05        38.47         0.59         0.13         3.12         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-64-1677 TCGA-64-1679 
        0.79         1.78         0.53         6.48        20.65        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       37.02        44.38         0.10        30.44        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
       13.87         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
       52.57        23.38        29.95        15.35         0.46         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
        1.25       163.10        27.16        19.27        20.58        21.86 
TCGA-78-7155 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
       38.50        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7539 TCGA-78-7542 TCGA-83-5908 
        8.48        88.11        26.53        10.75        10.55        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 
        0.36         0.89         1.22        41.33         0.03         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        4.18         1.12         5.36        31.66        48.53        43.76 
TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
        5.95         0.72         8.22 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.07              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            83.84            223.96 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            16.37             12.99 
[1] "0.1 - 83.8 (16.4)"  "0.0 - 224.0 (13.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     31   32
  6Q LOSS WILD-TYPE  125  100
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              31               125
  MALE                32               100
D51V4, continuous
D51V5, multiclass
D51V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1              19                61
  T2              32               137
  T3               8                14
  T4               4                12
D51V7, multiclass
       clus
vv      6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0                 38               134
  N1                 10                48
  N2+N3              15                37
D51V8, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              44               158
  M1               5                11
  MX              11                52
D51V9, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  I                30               119
  II               10                51
  III              16                41
  IV                4                12
D51V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      5   58
  6Q LOSS WILD-TYPE   14  211
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                5                14
  YES              58               211
D51V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      9   54
  6Q LOSS WILD-TYPE   35  190
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                9                35
  YES              54               190

Clustering(52) Variable = 7p loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED     5   3
  7P LOSS WILD-TYPE 168  78
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               246 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                3                78 
$`7P LOSS MUTATED`
TCGA-38-4630 TCGA-44-5643 TCGA-50-5931 TCGA-55-1594 TCGA-67-3770 TCGA-67-3774 
       35.28         3.48         8.78        38.73         0.99         0.59 
TCGA-69-7763 TCGA-78-7167 
       22.68        88.11 

$`7P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       10.22         8.32         6.44         6.21         4.60        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        13.74        23.05        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         1.97         0.59         2.04 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 
        0.89         0.69        13.87         5.06         6.12        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       15.35         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.12         0.07         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.59              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            88.11            223.96 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            15.73             13.38 
[1] "0.6 - 88.1 (15.7)"  "0.0 - 224.0 (13.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      5    5
  7P LOSS WILD-TYPE  151  127
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               5               151
  MALE                 5               127
D52V4, continuous
D52V5, multiclass
D52V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               3                77
  T2               7               162
  T3               0                22
  T4               0                16
D52V7, multiclass
       clus
vv      7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0                  8               164
  N1                  0                58
  N2+N3               2                50
D52V8, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0               7               195
  M1               1                15
  MX               1                62
D52V9, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  I                 7               142
  II                0                61
  III               2                55
  IV                1                15
D52V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    9
  7P LOSS WILD-TYPE   18  260
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                18
  YES               9               260
D52V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    9
  7P LOSS WILD-TYPE   43  235
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                43
  YES               9               235

Clustering(53) Variable = 7q loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     6   3
  7Q LOSS WILD-TYPE 167  78
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               245 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3                78 
$`7Q LOSS MUTATED`
TCGA-38-4630 TCGA-44-5643 TCGA-49-6742 TCGA-50-5931 TCGA-50-6673 TCGA-55-1594 
       35.28         3.48        15.02         8.78         0.72        38.73 
TCGA-55-1595 TCGA-67-3770 TCGA-67-3774 
       48.62         0.99         0.59 

$`7Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       10.22         8.32         6.44         6.21         4.60        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       23.05        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.97         0.59         2.04         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       32.68        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.59              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            48.62            223.96 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             8.78             13.61 
[1] "0.6 - 48.6 (8.8)"   "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      7    4
  7Q LOSS WILD-TYPE  149  128
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               7               149
  MALE                 4               128
D53V4, continuous
D53V5, multiclass
D53V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               4                76
  T2               7               162
  T3               0                22
  T4               0                16
D53V7, multiclass
       clus
vv      7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0                  8               164
  N1                  1                57
  N2+N3               2                50
D53V8, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0               8               194
  M1               0                16
  MX               2                61
D53V9, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  I                 8               141
  II                1                60
  III               2                55
  IV                0                16
D53V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   10
  7Q LOSS WILD-TYPE   18  259
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                18
  YES              10               259
D53V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      2    9
  7Q LOSS WILD-TYPE   42  235
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                2                42
  YES               9               235

Clustering(54) Variable = 8p loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    45  18
  8P LOSS WILD-TYPE 128  63
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               63               191 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               18                63 
$`8P LOSS MUTATED`
TCGA-05-4420 TCGA-05-4427 TCGA-05-4433 TCGA-05-5425 TCGA-35-4123 TCGA-38-4631 
       29.95        26.01        24.00         2.96         5.95        11.64 
TCGA-44-2662 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
       15.78         6.44         6.21         3.48        16.37         0.30 
TCGA-44-6774 TCGA-44-7660 TCGA-44-7670 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
        5.42         5.33        17.46        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4510 TCGA-49-6761 TCGA-50-5049 TCGA-50-5931 TCGA-50-5932 
       14.07        29.46         0.03        48.82         8.78        35.87 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       11.05        12.16        33.37         0.72        35.11        31.89 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6980 TCGA-55-7573 TCGA-55-7576 
       38.73        48.62         2.86         2.20         0.13         1.32 
TCGA-55-7727 TCGA-55-7903 TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 
        1.02         0.62         0.10        56.81        39.09        55.40 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       44.38         0.10        30.44         7.33         0.99         0.59 
TCGA-69-7760 TCGA-73-4668 TCGA-78-7150 TCGA-78-7152 TCGA-78-7155 TCGA-78-7536 
        5.06        15.35        21.86        39.48        38.50         8.02 
TCGA-78-7542 TCGA-86-7713 TCGA-91-6836 TCGA-91-6847 TCGA-95-7039 TCGA-95-7043 
       10.55         0.23         0.36        26.93         1.12         0.07 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        8.65         5.95         0.59 

$`8P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 
        8.98        30.02        26.01        25.02        25.02        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       35.28        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
       10.22         8.32         4.60         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       16.41         9.80         5.03         1.64        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 TCGA-49-4506 
       17.59        13.74        76.21        28.11        35.54        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
       49.28         8.05         9.27        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 
        3.88        25.51         6.21         8.38        13.74        23.05 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       45.17         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 
       38.47         0.59         1.12         3.12         1.28         0.79 
TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-64-1677 TCGA-64-1680 
        1.78         0.53         6.48         0.69        20.65        37.02 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 
       83.84        16.67        39.52         1.97         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        20.58        35.93        24.99        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 
      223.96         8.48        88.11        26.53        31.20        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        32.68        13.81         0.36         0.89 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 
        1.22        41.33         0.03         1.28         1.15         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7567 TCGA-97-7546 
        0.92         1.02         9.76         4.18         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7941 TCGA-99-7458 
       47.18        48.53        43.76         0.72         8.22 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.03              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            56.81            223.96 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            10.55             13.87 
[1] "0.0 - 56.8 (10.6)"  "0.0 - 224.0 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7941        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     40   35
  8P LOSS WILD-TYPE  116   97
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              40               116
  MALE                35                97
D54V4, continuous
D54V5, multiclass
D54V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              27                53
  T2              43               126
  T3               4                18
  T4               1                15
D54V7, multiclass
       clus
vv      8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0                 47               125
  N1                 14                44
  N2+N3              14                38
D54V8, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              56               146
  M1               3                13
  MX              15                48
D54V9, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  I                41               108
  II               17                44
  III              14                43
  IV                3                13
D54V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      4   71
  8P LOSS WILD-TYPE   15  198
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                4                15
  YES              71               198
D54V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     11   64
  8P LOSS WILD-TYPE   33  180
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               11                33
  YES              64               180

Clustering(55) Variable = 8q loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     7   0
  8Q LOSS WILD-TYPE 166  81
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                7               247 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                0                81 
$`8Q LOSS MUTATED`
TCGA-44-7660 TCGA-50-6597 TCGA-55-7573 TCGA-55-7727 TCGA-55-7903 TCGA-64-1679 
        5.33        33.37         0.13         1.02         0.62        55.40 
TCGA-95-7039 
        1.12 

$`8Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05        12.16         6.21         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 
       40.54        71.05        38.47         0.59         1.12         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 
        1.32         1.28         0.79         1.78         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.69         0.10        56.81        20.65        39.09        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       13.61         4.24         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        9.76         4.18         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.13              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            55.40            223.96 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             1.12             13.74 
[1] "0.1 - 55.4 (1.1)"   "0.0 - 224.0 (13.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr="     "9300000"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      5    5
  8Q LOSS WILD-TYPE  151  127
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               5               151
  MALE                 5               127
D55V4, continuous
[1] "Remove cluster labels:" "8Q LOSS MUTATED"       
clus
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                1                25 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-91-6849        TCGA-93-7348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-7458 
"8Q LOSS WILD-TYPE" 
D55V5, multiclass
D55V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               4                76
  T2               5               164
  T3               1                21
  T4               0                16
D55V7, multiclass
       clus
vv      8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0                  7               165
  N1                  1                57
  N2+N3               2                50
D55V8, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               5               197
  M1               0                16
  MX               5                58
D55V9, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  I                 6               143
  II                2                59
  III               2                55
  IV                0                16
D55V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0   10
  8Q LOSS WILD-TYPE   19  259
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                19
  YES              10               259
D55V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      2    8
  8Q LOSS WILD-TYPE   42  236
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                2                42
  YES               8               236

Clustering(56) Variable = 9p loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    51  30
  9P LOSS WILD-TYPE 122  51
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               81               173 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               30                51 
$`9P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4405 TCGA-05-4418 
        3.98        14.01         9.96         8.02        20.05         8.98 
TCGA-05-4433 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 TCGA-38-4628 TCGA-38-4630 
       24.00         4.96         2.96         2.04        49.02        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
       11.64         5.19        18.87         3.48        16.37         0.30 
TCGA-44-6146 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 
        9.93        16.41         5.33         1.64        18.87        17.46 
TCGA-44-7671 TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       17.59        12.66        14.07        29.46        43.20        15.02 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 
        9.27         8.78        35.87         8.45        12.26        11.47 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6673 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         0.72        31.89        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6975 TCGA-55-6985 TCGA-55-7281 TCGA-55-7576 
       45.17         2.86         3.88        40.54         0.59         1.32 
TCGA-55-7907 TCGA-55-7914 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5815 
        0.53         0.10        39.09        37.02        44.38         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 
        0.99         0.59         0.59         5.06         6.12        13.61 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       29.95        15.35         0.46         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7156 TCGA-78-7161 TCGA-78-7166 TCGA-78-7167 
       35.93        21.86        32.09         7.04         8.48        88.11 
TCGA-78-7540 TCGA-78-7633 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6831 
       28.96        32.68         0.89         0.23        41.33         1.28 
TCGA-91-6847 TCGA-91-6849 TCGA-95-7567 
       26.93         0.92         5.36 

$`9P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4415 
       38.07        19.92        37.02        24.03        47.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       14.93        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
       25.02        15.02         1.02         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        5.95         8.68        47.61        85.32        37.71        28.37 
TCGA-38-4632 TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        26.30        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6147 
        6.44         6.21         4.60         6.84         3.35         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        9.80         5.03        18.31        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       28.57        35.54        46.72        32.84         8.81        29.75 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 
       77.88        21.47        15.12         9.37         4.44        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 
        3.88        11.05         6.21        33.37         8.38        35.11 
TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       13.74        48.62         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92        48.49         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 
        2.20        45.34        32.71        60.03        24.99        71.05 
TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 
       38.47         1.12         0.13         3.12         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-64-1676 
        0.79         1.78         0.62         6.48         0.69        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        55.40        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       39.52         1.97         2.04         0.89         0.69        13.87 
TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
       22.68         4.24         2.01        52.57        23.38        20.28 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7152 
        1.32         4.01         1.25       163.10        27.16        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        19.50        38.50         5.88        40.11        22.29 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      104.15       223.96        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-91-6828 TCGA-91-6830 
       10.75        10.55        13.81         0.36         1.22         0.03 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        1.15         0.36         4.18         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.12         0.07        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.10              0.03 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            88.11            223.96 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            12.16             13.81 
[1] "0.1 - 88.1 (12.2)"  "0.0 - 224.0 (13.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     43   47
  9P LOSS WILD-TYPE  113   85
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              43               113
  MALE                47                85
D56V4, continuous
D56V5, multiclass
D56V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              18                62
  T2              60               109
  T3               8                14
  T4               4                12
D56V7, multiclass
       clus
vv      9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0                 48               124
  N1                 27                31
  N2+N3              14                38
D56V8, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0              63               139
  M1               5                11
  MX              18                45
D56V9, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  I                40               109
  II               28                33
  III              16                41
  IV                5                11
D56V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      6   84
  9P LOSS WILD-TYPE   13  185
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                6                13
  YES              84               185
D56V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     16   74
  9P LOSS WILD-TYPE   28  170
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               16                28
  YES              74               170

Clustering(57) Variable = 9q loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    42  23
  9Q LOSS WILD-TYPE 131  58
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               65               189 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               23                58 
$`9Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4402 TCGA-05-4418 TCGA-05-4432 TCGA-05-4433 TCGA-05-5425 
        3.98         8.02         8.98        25.02        24.00         2.96 
TCGA-05-5715 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
        2.04        47.61        49.02        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-5644 TCGA-44-6144 TCGA-44-7660 TCGA-44-7669 TCGA-44-7670 
       18.87        16.37         0.30         5.33        18.87        17.46 
TCGA-44-7671 TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-4514 TCGA-50-5932 
       17.59        12.66        14.07        29.46        43.20        35.87 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6594 TCGA-50-6673 TCGA-55-1592 TCGA-55-1594 
        8.45        12.26        12.16         0.72        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6975 TCGA-55-6985 TCGA-55-7281 TCGA-55-7907 
       45.17         2.86         3.88        40.54         0.59         0.53 
TCGA-55-7914 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 TCGA-67-3770 
        0.10        37.02        44.38        83.84        16.67         0.99 
TCGA-67-3772 TCGA-67-3774 TCGA-69-7760 TCGA-69-7761 TCGA-73-4662 TCGA-73-4668 
        0.59         0.59         5.06         6.12        29.95        15.35 
TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        0.46        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7633 TCGA-86-7711 TCGA-86-7713 
       40.11         7.04        88.11        32.68         0.89         0.23 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 TCGA-95-7039 TCGA-95-7567 
       41.33         1.28        26.93         1.12         5.36 

$`9Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
       47.05        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        26.01        25.02        15.02         1.02         4.96 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        0.99         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 
       37.71        28.37        44.61        26.30        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        5.03         1.64        18.31        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       28.57        35.54        46.72        32.84         8.81        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        8.05         9.27         8.78        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       11.05         6.21        33.37         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       13.74        48.62         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92        48.49         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 
        2.20        45.34        32.71        60.03        24.99        71.05 
TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         1.78         0.62         6.48         0.69 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        39.09        55.40         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
       39.52         7.33         1.97         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
       13.87        22.68        13.61         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       23.38        20.28         1.32         4.01         1.25       163.10 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
        5.88        22.29       104.15       223.96         8.48        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-83-5908 TCGA-86-7701 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
       13.81         0.36         1.22         0.03         1.15         0.36 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 
        4.18         0.92         1.02         9.76         4.18         0.07 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.10              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            88.11            223.96 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            14.07             13.15 
[1] "0.1 - 88.1 (14.1)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     40   35
  9Q LOSS WILD-TYPE  116   97
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              40               116
  MALE                35                97
D57V4, continuous
D57V5, multiclass
D57V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              17                63
  T2              48               121
  T3               8                14
  T4               2                14
D57V7, multiclass
       clus
vv      9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0                 43               129
  N1                 20                38
  N2+N3              10                42
D57V8, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0              52               150
  M1               5                11
  MX              14                49
D57V9, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  I                38               111
  II               20                41
  III              11                46
  IV                5                11
D57V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      3   72
  9Q LOSS WILD-TYPE   16  197
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                3                16
  YES              72               197
D57V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     12   63
  9Q LOSS WILD-TYPE   32  181
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO               12                32
  YES              63               181

Clustering(58) Variable = 10p loss mutation analysis
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    12   8
  10P LOSS WILD-TYPE 161  73
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                20                234 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 8                 73 
$`10P LOSS MUTATED`
TCGA-05-5715 TCGA-38-4631 TCGA-38-6178 TCGA-44-3919 TCGA-44-6779 TCGA-44-7660 
        2.04        11.64         5.19         6.21        16.41         5.33 
TCGA-44-7669 TCGA-49-4488 TCGA-50-5931 TCGA-50-6591 TCGA-55-1596 TCGA-55-7281 
       18.87        28.57         8.78         3.88        45.17         0.59 
TCGA-64-1676 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-78-7147 
       56.81        83.84         0.10        16.67         0.99        19.27 
TCGA-78-7540 TCGA-95-7043 
       28.96         0.07 

$`10P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.44         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       63.72        32.45        36.49         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.31        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       13.74        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
        0.10        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 
        1.25       163.10        27.16         5.65        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       10.75        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        4.18         1.12         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.07               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             83.84             223.96 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            10.210             13.675 
[1] "0.1 - 83.8 (10.2)"  "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     16    7
  10P LOSS WILD-TYPE  140  125
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               16                140
  MALE                  7                125
D58V4, continuous
D58V5, multiclass
D58V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                8                 72
  T2               13                156
  T3                1                 21
  T4                1                 15
D58V7, multiclass
       clus
vv      10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0                  16                156
  N1                   5                 53
  N2+N3                2                 50
D58V8, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0               13                189
  M1                1                 15
  MX                7                 56
D58V9, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  I                 12                137
  II                 6                 55
  III                3                 54
  IV                 1                 15
D58V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      0   23
  10P LOSS WILD-TYPE   19  246
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 0                 19
  YES               23                246
D58V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      3   20
  10P LOSS WILD-TYPE   41  224
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 3                 41
  YES               20                224

Clustering(59) Variable = 10q loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    13   8
  10Q LOSS WILD-TYPE 160  73
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                21                233 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 8                 73 
$`10Q LOSS MUTATED`
TCGA-05-4397 TCGA-05-5715 TCGA-38-4631 TCGA-44-3919 TCGA-44-7660 TCGA-44-7669 
       24.03         2.04        11.64         6.21         5.33        18.87 
TCGA-49-4505 TCGA-50-6591 TCGA-55-5899 TCGA-55-7281 TCGA-64-1676 TCGA-64-5774 
       14.07         3.88         2.86         0.59        56.81        83.84 
TCGA-64-5779 TCGA-67-3770 TCGA-73-4668 TCGA-78-7147 TCGA-78-7535 TCGA-78-7540 
       16.67         0.99        15.35        19.27        31.20        28.96 
TCGA-78-7542 TCGA-91-6847 TCGA-95-7043 
       10.55        26.93         0.07 

$`10Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.44         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        1.64        18.31        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       28.11        28.57        12.66        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       45.17         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       71.05        38.47         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        6.48         0.69         0.10        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       37.02        44.38         0.10        30.44        39.52         7.33 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       53.33        10.75        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        0.36         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.12         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.07               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             83.84             223.96 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             14.07              13.15 
[1] "0.1 - 83.8 (14.1)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
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        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     14   11
  10Q LOSS WILD-TYPE  142  121
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               14                142
  MALE                 11                121
D59V4, continuous
[1] "Remove cluster labels:" "10Q LOSS MUTATED"      
clus
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 1                 25 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7714         TCGA-91-6849         TCGA-93-7348 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-99-7458 
"10Q LOSS WILD-TYPE" 
D59V5, multiclass
D59V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1                8                 72
  T2               17                152
  T3                0                 22
  T4                0                 16
D59V7, multiclass
       clus
vv      10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0                  17                155
  N1                   7                 51
  N2+N3                1                 51
D59V8, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0               18                184
  M1                1                 15
  MX                5                 58
D59V9, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  I                 16                133
  II                 6                 55
  III                1                 56
  IV                 1                 15
D59V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      0   25
  10Q LOSS WILD-TYPE   19  244
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 0                 19
  YES               25                244
D59V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      4   21
  10Q LOSS WILD-TYPE   40  223
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 4                 40
  YES               21                223

Clustering(60) Variable = 11p loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    14   5
  11P LOSS WILD-TYPE 159  76
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                19                235 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 5                 76 
$`11P LOSS MUTATED`
TCGA-05-4427 TCGA-35-5375 TCGA-38-4625 TCGA-38-4632 TCGA-44-5643 TCGA-49-4510 
       26.01         8.68        47.61        44.61         3.48        29.46 
TCGA-50-6594 TCGA-53-7624 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-64-1676 
       12.16        35.11        48.62        45.17         2.86        56.81 
TCGA-64-5774 TCGA-64-5815 TCGA-73-4670 TCGA-78-7145 TCGA-78-7535 TCGA-86-7711 
       83.84         7.33         0.46        27.16        31.20         0.89 
TCGA-91-6836 
        0.36 

$`11P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 
       49.02        28.37        35.28        11.64         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84         8.81        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
        3.88        25.51        11.05         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 
        8.38        31.89        13.74        23.05        38.73         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.69         0.10        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       44.38         0.10        30.44        16.67        39.52         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 
        1.32         4.01         1.25       163.10         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.36         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.36               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             83.84             223.96 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             27.16              13.15 
[1] "0.4 - 83.8 (27.2)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     10   12
  11P LOSS WILD-TYPE  146  120
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               10                146
  MALE                 12                120
D60V4, continuous
[1] "Remove cluster labels:" "11P LOSS MUTATED"      
clus
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 2                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-55-7283 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7725         TCGA-55-7910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7713         TCGA-86-7714 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
D60V5, multiclass
D60V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1                5                 75
  T2               14                155
  T3                2                 20
  T4                1                 15
D60V7, multiclass
       clus
vv      11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0                  10                162
  N1                   9                 49
  N2+N3                3                 49
D60V8, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               15                187
  M1                4                 12
  MX                3                 60
D60V9, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  I                  8                141
  II                 7                 54
  III                3                 54
  IV                 4                 12
D60V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      1   21
  11P LOSS WILD-TYPE   18  248
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 1                 18
  YES               21                248
D60V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      4   18
  11P LOSS WILD-TYPE   40  226
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 4                 40
  YES               18                226

Clustering(61) Variable = 11q loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    13   3
  11Q LOSS WILD-TYPE 160  78
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                16                238 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 3                 78 
$`11Q LOSS MUTATED`
TCGA-05-4427 TCGA-05-4433 TCGA-35-5375 TCGA-38-4625 TCGA-44-4112 TCGA-44-5643 
       26.01        24.00         8.68        47.61         4.60         3.48 
TCGA-49-4510 TCGA-50-6594 TCGA-55-1595 TCGA-64-1678 TCGA-64-5774 TCGA-64-5778 
       29.46        12.16        48.62        39.09        83.84        30.44 
TCGA-64-5815 TCGA-69-7764 TCGA-73-4662 TCGA-78-7145 
        7.33        13.61        29.95        27.16 

$`11Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       18.31        18.87        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       35.11        31.89        13.74        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       55.40        37.02        44.38         0.10        16.67        39.52 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
        0.69        13.87         5.06         6.12        22.68         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 
        1.32         4.01         1.25       163.10         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              3.48               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             83.84             223.96 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            26.585             12.825 
[1] "3.5 - 83.8 (26.6)"  "0.0 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "2.4"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      9    7
  11Q LOSS WILD-TYPE  147  125
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE                9                147
  MALE                  7                125
D61V4, continuous
D61V5, multiclass
D61V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                3                 77
  T2               11                158
  T3                1                 21
  T4                1                 15
D61V7, multiclass
       clus
vv      11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0                   9                163
  N1                   4                 54
  N2+N3                3                 49
D61V8, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               15                187
  M1                1                 15
  MX                0                 63
D61V9, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  I                  8                141
  II                 4                 57
  III                3                 54
  IV                 1                 15
D61V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      2   14
  11Q LOSS WILD-TYPE   17  255
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 2                 17
  YES               14                255
D61V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      5   11
  11Q LOSS WILD-TYPE   39  233
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 5                 39
  YES               11                233

Clustering(62) Variable = 12p loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    15   8
  12P LOSS WILD-TYPE 158  73
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                23                231 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 8                 73 
$`12P LOSS MUTATED`
TCGA-05-4249 TCGA-44-2666 TCGA-44-7671 TCGA-50-5051 TCGA-50-5932 TCGA-50-5939 
       38.07         3.19        17.59        14.96        35.87        15.12 
TCGA-50-5942 TCGA-50-6594 TCGA-55-5899 TCGA-55-7727 TCGA-55-7914 TCGA-64-1676 
        4.44        12.16         2.86         1.02         0.10        56.81 
TCGA-64-5778 TCGA-67-3771 TCGA-67-6217 TCGA-73-4677 TCGA-78-7147 TCGA-78-7535 
       30.44         1.97        13.87         1.25        19.27        31.20 
TCGA-91-6847 TCGA-91-6849 TCGA-95-7043 TCGA-97-7547 TCGA-97-7938 
       26.93         0.92         0.07        47.18         0.59 

$`12P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        15.78        13.15         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.46        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27         8.78        77.88        21.47 
TCGA-50-5936 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        8.45         9.37        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       45.17         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.32         1.28         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        6.48         0.69        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84         0.10        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 
        1.32         4.01       163.10        27.16         5.65        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        26.53         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        1.15         0.36         4.18         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        1.12         5.36        31.66        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
        5.95         0.72         8.22 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.07               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             56.81             223.96 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             13.87              13.15 
[1] "0.1 - 56.8 (13.9)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     13   12
  12P LOSS WILD-TYPE  143  120
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               13                143
  MALE                 12                120
D62V4, continuous
D62V5, multiclass
D62V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                9                 71
  T2               15                154
  T3                1                 21
  T4                0                 16
D62V7, multiclass
       clus
vv      12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                  16                156
  N1                   5                 53
  N2+N3                4                 48
D62V8, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0               17                185
  M1                0                 16
  MX                8                 55
D62V9, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  I                 16                133
  II                 4                 57
  III                4                 53
  IV                 0                 16
D62V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2   23
  12P LOSS WILD-TYPE   17  246
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 2                 17
  YES               23                246
D62V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2   23
  12P LOSS WILD-TYPE   42  221
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 2                 42
  YES               23                221

Clustering(63) Variable = 12q loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED     8   8
  12Q LOSS WILD-TYPE 165  73
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                16                238 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                 73 
$`12Q LOSS MUTATED`
TCGA-44-6779 TCGA-44-7671 TCGA-50-5932 TCGA-50-5939 TCGA-50-6594 TCGA-55-6984 
       16.41        17.59        35.87        15.12        12.16        24.99 
TCGA-55-7727 TCGA-64-5778 TCGA-67-6217 TCGA-73-4677 TCGA-78-7147 TCGA-78-7535 
        1.02        30.44        13.87         1.25        19.27        31.20 
TCGA-91-6847 TCGA-91-7771 TCGA-95-7043 TCGA-97-7547 
       26.93         1.02         0.07        47.18 

$`12Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.87        17.46        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       32.71        60.03        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7728 
        1.12         0.13         3.12         1.32         1.28         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 
        1.32         4.01       163.10        27.16         5.65        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        26.53         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 
        1.15         0.36         4.18         0.92         9.76         4.18 
TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        1.12         5.36        31.66        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.07               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             47.18             223.96 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            17.000             12.825 
[1] "0.1 - 47.2 (17.0)"  "0.0 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      8   10
  12Q LOSS WILD-TYPE  148  122
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                8                148
  MALE                 10                122
D63V4, continuous
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 1                 25 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-71-6725         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7714         TCGA-91-6849         TCGA-93-7348 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-99-7458 
"12Q LOSS WILD-TYPE" 
D63V5, multiclass
D63V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                3                 77
  T2               13                156
  T3                2                 20
  T4                0                 16
D63V7, multiclass
       clus
vv      12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                  10                162
  N1                   6                 52
  N2+N3                2                 50
D63V8, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0               12                190
  M1                0                 16
  MX                6                 57
D63V9, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  I                  9                140
  II                 7                 54
  III                2                 55
  IV                 0                 16
D63V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      0   18
  12Q LOSS WILD-TYPE   19  251
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 0                 19
  YES               18                251
D63V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2   16
  12Q LOSS WILD-TYPE   42  228
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 2                 42
  YES               16                228

Clustering(64) Variable = 13q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    37  22
  13Q LOSS WILD-TYPE 136  59
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                59                195 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                22                 59 
$`13Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4432 
        3.98        24.03        47.05         8.02        20.05        25.02 
TCGA-05-5423 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4632 TCGA-38-6178 
        4.96         5.95         8.68        47.61        44.61         5.19 
TCGA-44-2656 TCGA-44-2662 TCGA-44-5643 TCGA-44-5644 TCGA-44-6779 TCGA-44-7669 
       19.10        15.78         3.48        16.37        16.41        18.87 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-50-5051 TCGA-50-5931 TCGA-50-5935 
        8.81        29.46        29.75        14.96         8.78        21.47 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 
        8.45        12.26        33.37         8.38        13.74        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6981 TCGA-55-7576 TCGA-55-7903 
       48.62        45.17         2.86        45.34         1.32         0.62 
TCGA-64-1676 TCGA-64-1681 TCGA-64-5779 TCGA-67-3770 TCGA-69-7760 TCGA-69-7764 
       56.81        44.38        16.67         0.99         5.06        13.61 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       23.38        29.95        15.35        27.16         5.65        19.27 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7539 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 
       19.50        38.50        10.75         0.89         0.23        41.33 
TCGA-91-6831 TCGA-91-6836 TCGA-95-7567 TCGA-97-7546 TCGA-97-7554 
        1.28         0.36         5.36        31.66         8.65 

$`13Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4415 
       38.07        19.92        14.01        37.02         9.96         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       14.93         8.98        29.95        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        2.04         0.46         7.36        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        11.64        26.30        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        1.64        18.31        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       32.84        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 
       49.28         8.05         9.27        35.87        77.88        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       11.05        12.16         6.21         0.72        35.11        31.89 
TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       38.73         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
        2.20        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       38.47         0.59         1.12         0.13         3.12         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         1.78         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 
        0.10        20.65        39.09        55.40        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
        0.10        30.44        39.52         7.33         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        2.04         0.59         0.89         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4670 
       22.68         4.24         2.01        52.57        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 
        1.32         4.01         1.25       163.10        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       21.86        39.48        24.99        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
       26.53        31.20         8.02        53.33        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 
       32.68        13.81         0.36         1.22         0.03         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 
        1.12         0.07        47.18        48.53        43.76         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.23               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             56.81             223.96 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             15.78              12.16 
[1] "0.2 - 56.8 (15.8)"  "0.0 - 224.0 (12.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     32   34
  13Q LOSS WILD-TYPE  124   98
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               32                124
  MALE                 34                 98
D64V4, continuous
D64V5, multiclass
D64V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               17                 63
  T2               41                128
  T3                4                 18
  T4                4                 12
D64V7, multiclass
       clus
vv      13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0                  33                139
  N1                  17                 41
  N2+N3               15                 37
D64V8, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0               48                154
  M1                5                 11
  MX               11                 52
D64V9, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  I                 30                119
  II                14                 47
  III               17                 40
  IV                 5                 11
D64V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      5   61
  13Q LOSS WILD-TYPE   14  208
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 5                 14
  YES               61                208
D64V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     12   54
  13Q LOSS WILD-TYPE   32  190
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                12                 32
  YES               54                190

Clustering(65) Variable = 14q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    17   7
  14Q LOSS WILD-TYPE 156  74
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                24                230 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 7                 74 
$`14Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4427 TCGA-38-4625 TCGA-38-4632 TCGA-44-5643 
        9.96        20.05        26.01        47.61        44.61         3.48 
TCGA-44-6146 TCGA-44-7669 TCGA-44-7671 TCGA-49-4514 TCGA-50-5931 TCGA-55-1595 
        9.93        18.87        17.59        43.20         8.78        48.62 
TCGA-55-7281 TCGA-64-1680 TCGA-64-5778 TCGA-64-5779 TCGA-67-3774 TCGA-73-4662 
        0.59        37.02        30.44        16.67         0.59        29.95 
TCGA-78-7146 TCGA-78-7150 TCGA-78-7535 TCGA-86-7711 TCGA-97-7546 TCGA-97-7547 
        5.65        21.86        31.20         0.89        31.66        47.18 

$`14Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       28.37        35.28        11.64         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 
        4.60        16.37         6.84         0.30         3.35         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.46        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       29.75        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        39.09        55.40        44.38        83.84 
TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        2.04         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
      163.10        27.16        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       32.68        13.81         0.36         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        5.36        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.59               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             48.62             223.96 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            20.955             12.460 
[1] "0.6 - 48.6 (21.0)"  "0.0 - 224.0 (12.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     14   15
  14Q LOSS WILD-TYPE  142  117
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               14                142
  MALE                 15                117
D65V4, continuous
D65V5, multiclass
D65V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                6                 74
  T2               21                148
  T3                1                 21
  T4                1                 15
D65V7, multiclass
       clus
vv      14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0                  18                154
  N1                   6                 52
  N2+N3                5                 47
D65V8, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0               23                179
  M1                2                 14
  MX                3                 60
D65V9, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  I                 16                133
  II                 5                 56
  III                5                 52
  IV                 2                 14
D65V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      3   26
  14Q LOSS WILD-TYPE   16  243
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 3                 16
  YES               26                243
D65V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      7   22
  14Q LOSS WILD-TYPE   37  222
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 7                 37
  YES               22                222

Clustering(66) Variable = 15q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    35  19
  15Q LOSS WILD-TYPE 138  62
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                54                200 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                19                 62 
$`15Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4398 TCGA-05-4402 TCGA-05-4424 TCGA-05-5425 TCGA-35-4123 
       38.07        47.05         8.02        30.02         2.96         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
        8.68        47.61        49.02        35.28        11.64         5.19 
TCGA-44-2659 TCGA-44-3919 TCGA-44-7660 TCGA-44-7667 TCGA-44-7670 TCGA-49-4488 
       17.39         6.21         5.33        18.31        17.46        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4514 TCGA-50-5051 TCGA-50-5935 TCGA-50-6591 
       12.66        46.72        43.20        14.96        21.47         3.88 
TCGA-50-6594 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-5899 TCGA-55-7281 
       12.16         8.38        31.89        13.74         2.86         0.59 
TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 TCGA-64-1676 TCGA-64-1681 TCGA-64-5774 
        1.32         1.02         0.62        56.81        44.38        83.84 
TCGA-64-5779 TCGA-67-3770 TCGA-73-4662 TCGA-73-4668 TCGA-78-7145 TCGA-78-7146 
       16.67         0.99        29.95        15.35        27.16         5.65 
TCGA-78-7147 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7542 TCGA-91-6829 
       19.27        88.11        31.20         8.02        10.55        41.33 
TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-95-7039 TCGA-95-7567 TCGA-97-7554 
        1.28         0.36        26.93         1.12         5.36         8.65 

$`15Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 
        4.96         0.99         2.04         0.46         7.36        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       37.71        28.37        44.61        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
       10.22         8.32         6.44         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 
        9.80         5.03         1.64        18.87        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       76.21        28.11        35.54        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       42.31        25.51        11.05         6.21        33.37         0.72 
TCGA-53-7624 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       35.11        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 
        1.12         0.13         3.12         1.28         0.79         1.78 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 
        0.53         6.48         0.69         0.10        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       55.40        37.02         0.10        30.44        39.52         7.33 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        23.38        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
        4.01         1.25       163.10        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 
       26.53        53.33        10.75        28.96        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 
        0.36         0.89         0.23         1.22         0.03         1.15 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 
        4.18         0.92         1.02         9.76         4.18         0.07 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 
       31.66        47.18        48.53        43.76         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.36               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             88.11             223.96 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             14.35              13.15 
[1] "0.4 - 88.1 (14.4)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     38   26
  15Q LOSS WILD-TYPE  118  106
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               38                118
  MALE                 26                106
D66V4, continuous
D66V5, multiclass
D66V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1               20                 60
  T2               35                134
  T3                6                 16
  T4                3                 13
D66V7, multiclass
       clus
vv      15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0                  38                134
  N1                  13                 45
  N2+N3               12                 40
D66V8, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               44                158
  M1                4                 12
  MX               13                 50
D66V9, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  I                 31                118
  II                15                 46
  III               13                 44
  IV                 4                 12
D66V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      5   59
  15Q LOSS WILD-TYPE   14  210
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 5                 14
  YES               59                210
D66V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     12   52
  15Q LOSS WILD-TYPE   32  192
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                12                 32
  YES               52                192

Clustering(67) Variable = 16p loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    12  10
  16P LOSS WILD-TYPE 161  71
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                22                232 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                10                 71 
$`16P LOSS MUTATED`
TCGA-05-4396 TCGA-05-4402 TCGA-05-4420 TCGA-05-4427 TCGA-44-5643 TCGA-44-7660 
        9.96         8.02        29.95        26.01         3.48         5.33 
TCGA-49-4488 TCGA-49-6743 TCGA-50-5936 TCGA-50-6591 TCGA-53-7624 TCGA-55-5899 
       28.57        12.13         8.45         3.88        35.11         2.86 
TCGA-55-6968 TCGA-67-3770 TCGA-73-4662 TCGA-78-7143 TCGA-78-7167 TCGA-78-7535 
       42.48         0.99        29.95       163.10        88.11        31.20 
TCGA-78-7536 TCGA-91-6847 TCGA-95-7567 TCGA-97-7937 
        8.02        26.93         5.36         5.95 

$`16P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       47.05        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       18.31        18.87        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72         8.38        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        1.32         4.01         1.25        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 
      104.15       223.96         8.48        26.53        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        0.36         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.12         0.07        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         0.59         0.72         8.22 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.99               0.03 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            163.10             223.96 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            11.045             13.675 
[1] "1.0 - 163.1 (11.0)" "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     11   13
  16P LOSS WILD-TYPE  145  119
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               11                145
  MALE                 13                119
D67V4, continuous
[1] "Remove cluster labels:" "16P LOSS MUTATED"      
clus
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 1                 25 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4666         TCGA-73-4668 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7714         TCGA-91-6849         TCGA-93-7348 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-7458 
"16P LOSS WILD-TYPE" 
D67V5, multiclass
D67V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                6                 74
  T2               16                153
  T3                1                 21
  T4                1                 15
D67V7, multiclass
       clus
vv      16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0                  15                157
  N1                   4                 54
  N2+N3                4                 48
D67V8, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0               13                189
  M1                5                 11
  MX                6                 57
D67V9, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  I                 13                136
  II                 2                 59
  III                5                 52
  IV                 4                 12
D67V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      3   21
  16P LOSS WILD-TYPE   16  248
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 3                 16
  YES               21                248
D67V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      5   19
  16P LOSS WILD-TYPE   39  225
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 5                 39
  YES               19                225

Clustering(68) Variable = 16q loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    29  10
  16Q LOSS WILD-TYPE 144  71
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                39                215 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                10                 71 
$`16Q LOSS MUTATED`
TCGA-05-4402 TCGA-05-4405 TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 
        8.02        20.05        29.95        26.01        25.02         5.95 
TCGA-38-4625 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6775 
       47.61         6.21         4.60         3.48        16.37         2.70 
TCGA-44-7660 TCGA-49-4488 TCGA-49-6743 TCGA-50-5936 TCGA-50-6591 TCGA-53-7624 
        5.33        28.57        12.13         8.45         3.88        35.11 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6968 TCGA-55-7281 TCGA-64-5774 TCGA-64-5778 
       48.62         2.86        42.48         0.59        83.84        30.44 
TCGA-67-3770 TCGA-73-4662 TCGA-78-7143 TCGA-78-7146 TCGA-78-7152 TCGA-78-7167 
        0.99        29.95       163.10         5.65        39.48        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-86-7711 TCGA-86-7713 TCGA-91-6847 TCGA-91-7771 
       31.20         8.02         0.89         0.23        26.93         1.02 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7937 
        5.36        31.66         5.95 

$`16Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       24.03        47.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       10.22         8.32         6.44         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         5.42        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72         8.38        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       38.73        45.17         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       71.05        38.47         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       55.40        37.02        44.38         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
        4.24         2.01        52.57        23.38        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7145 TCGA-78-7147 
        0.46         1.32         4.01         1.25        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        35.93        21.86        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-91-6828 TCGA-91-6829 
       10.55        32.68        13.81         0.36         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15         0.36         4.18         0.92 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-97-7547 TCGA-97-7552 
        9.76         4.18         1.12         0.07        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         0.59         0.72         8.22 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.23               0.03 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            163.10             223.96 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             12.13              13.61 
[1] "0.2 - 163.1 (12.1)" "0.0 - 224.0 (13.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     21   21
  16Q LOSS WILD-TYPE  135  111
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               21                135
  MALE                 21                111
D68V4, continuous
D68V5, multiclass
D68V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               12                 68
  T2               29                140
  T3                1                 21
  T4                0                 16
D68V7, multiclass
       clus
vv      16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0                  29                143
  N1                   6                 52
  N2+N3                6                 46
D68V8, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0               27                175
  M1                5                 11
  MX                8                 55
D68V9, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  I                 26                123
  II                 5                 56
  III                6                 51
  IV                 4                 12
D68V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3   39
  16Q LOSS WILD-TYPE   16  230
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 3                 16
  YES               39                230
D68V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      6   36
  16Q LOSS WILD-TYPE   38  208
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 6                 38
  YES               36                208

Clustering(69) Variable = 17p loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    43  18
  17P LOSS WILD-TYPE 130  63
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                61                193 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                18                 63 
$`17P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4420 TCGA-05-4426 TCGA-05-4433 
       38.07         9.96        24.03        29.95        26.01        24.00 
TCGA-05-5429 TCGA-35-4123 TCGA-38-4625 TCGA-44-2659 TCGA-44-2665 TCGA-44-3919 
        0.99         5.95        47.61        17.39        13.15         6.21 
TCGA-44-5643 TCGA-44-6779 TCGA-44-7660 TCGA-49-4488 TCGA-49-4505 TCGA-50-5931 
        3.48        16.41         5.33        28.57        14.07         8.78 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
        8.45        12.26         3.88         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6968 TCGA-55-6972 
       31.89        23.05        38.73        45.17        42.48        48.49 
TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 TCGA-55-7573 TCGA-55-7576 TCGA-55-7727 
       32.71        24.99        40.54         0.13         1.32         1.02 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7914 TCGA-64-1676 TCGA-64-1679 TCGA-64-5774 
        0.62         6.48         0.10        56.81        55.40        83.84 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-6217 TCGA-69-7760 
        7.33         0.99         0.59         2.04        13.87         5.06 
TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-78-7146 TCGA-78-7150 TCGA-78-7535 
        6.12        13.61         4.24         5.65        21.86        31.20 
TCGA-78-7536 TCGA-78-7540 TCGA-91-6831 TCGA-91-6847 TCGA-95-7039 TCGA-97-7554 
        8.02        28.96         1.28        26.93         1.12         8.65 
TCGA-97-7938 
        0.59 

$`17P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4427 
       20.05         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        15.02         1.02         4.96         2.96 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       26.30        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.44         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        9.80         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       17.59        13.74        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        8.05         9.27        35.87        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        9.37         4.44        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7813 TCGA-55-1595 TCGA-55-5899 
       12.16         6.21        33.37        13.74        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6983 
        3.88         5.46         7.76         2.20        45.34        60.03 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 
       71.05        38.47         0.59         1.12         3.12         1.28 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7911 TCGA-64-1677 TCGA-64-1678 
        0.79         1.78         0.53         0.69        20.65        39.09 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        44.38         0.10        30.44        16.67        39.52 
TCGA-67-3771 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7763 TCGA-71-6725 
        1.97         0.59         0.89         0.69        22.68         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        1.32         4.01         1.25       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        35.93        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 
      223.96         8.48        88.11        26.53        53.33        10.75 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
        1.22        41.33         0.03         1.15         0.36         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 
        0.92         1.02         9.76         4.18         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7941 
       31.66        47.18        48.53        43.76         5.95         0.72 
TCGA-99-7458 
        8.22 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.10               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             83.84             223.96 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             12.26              13.74 
[1] "0.1 - 83.8 (12.3)"  "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
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        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
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        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
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        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
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        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
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        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     37   36
  17P LOSS WILD-TYPE  119   96
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               37                119
  MALE                 36                 96
D69V4, continuous
D69V5, multiclass
D69V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               22                 58
  T2               45                124
  T3                4                 18
  T4                2                 14
D69V7, multiclass
       clus
vv      17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0                  46                126
  N1                  17                 41
  N2+N3               10                 42
D69V8, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               51                151
  M1                4                 12
  MX               18                 45
D69V9, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  I                 37                112
  II                21                 40
  III               11                 46
  IV                 4                 12
D69V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      2   71
  17P LOSS WILD-TYPE   17  198
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 2                 17
  YES               71                198
D69V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     11   62
  17P LOSS WILD-TYPE   33  182
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                11                 33
  YES               62                182

Clustering(70) Variable = 17q loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED     4   5
  17Q LOSS WILD-TYPE 169  76
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 9                245 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 5                 76 
$`17Q LOSS MUTATED`
TCGA-05-4396 TCGA-44-2665 TCGA-49-4488 TCGA-50-5931 TCGA-53-7624 TCGA-55-6972 
        9.96        13.15        28.57         8.78        35.11        48.49 
TCGA-69-7764 TCGA-78-7146 TCGA-78-7535 
       13.61         5.65        31.20 

$`17Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        15.78         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       17.46        17.59        13.74        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72         8.38        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.10        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       15.35         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       32.68        13.81         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              5.65               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             48.49             223.96 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             13.61              13.15 
[1] "5.7 - 48.5 (13.6)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      6    5
  17Q LOSS WILD-TYPE  150  127
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                6                150
  MALE                  5                127
D70V4, continuous
D70V5, multiclass
D70V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                2                 78
  T2                8                161
  T3                0                 22
  T4                1                 15
D70V7, multiclass
       clus
vv      17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0                   6                166
  N1                   3                 55
  N2+N3                2                 50
D70V8, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                9                193
  M1                1                 15
  MX                1                 62
D70V9, multiclass
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  I                  5                144
  II                 2                 59
  III                3                 54
  IV                 1                 15
D70V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      0   11
  17Q LOSS WILD-TYPE   19  258
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 0                 19
  YES               11                258
D70V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      3    8
  17Q LOSS WILD-TYPE   41  236
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 3                 41
  YES                8                236

Clustering(71) Variable = 18p loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    24  12
  18P LOSS WILD-TYPE 149  69
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                36                218 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                12                 69 
$`18P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4426 TCGA-05-5425 TCGA-05-5715 TCGA-35-5375 
        3.98        37.02        26.01         2.96         2.04         8.68 
TCGA-38-4632 TCGA-44-6779 TCGA-44-7669 TCGA-44-7670 TCGA-49-4488 TCGA-49-4505 
       44.61        16.41        18.87        17.46        28.57        14.07 
TCGA-49-4512 TCGA-50-5936 TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-1596 
       29.75         8.45        33.37        35.11        38.73        45.17 
TCGA-55-6972 TCGA-55-6975 TCGA-55-7281 TCGA-55-7283 TCGA-55-7728 TCGA-55-7910 
       48.49         3.88         0.59         1.12         0.79         6.48 
TCGA-67-6216 TCGA-69-7765 TCGA-73-4666 TCGA-73-4670 TCGA-78-7146 TCGA-78-7167 
        0.69         4.24        20.28         0.46         5.65        88.11 
TCGA-78-7535 TCGA-91-6836 TCGA-95-7039 TCGA-95-7567 TCGA-97-7937 TCGA-97-7941 
       31.20         0.36         1.12         5.36         5.95         0.72 

$`18P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         4.96         0.99         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 
        9.80         5.33         5.03         1.64        18.31        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       13.74        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       11.05        12.16         6.21         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       13.74        23.05        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 
        0.79        42.48        40.70        15.25         0.92         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       40.54        71.05        38.47         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.28         1.02         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.10        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89        13.87         5.06         6.12        22.68        13.61 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 
        2.01        52.57        23.38        29.95        15.35         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
        4.01         1.25       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
      223.96         8.48        26.53         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        0.07        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7938 TCGA-99-7458 
        0.59         8.22 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.36               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             88.11             223.96 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             8.565             13.675 
[1] "0.4 - 88.1 (8.6)"   "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     26   20
  18P LOSS WILD-TYPE  130  112
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               26                130
  MALE                 20                112
D71V4, continuous
D71V5, multiclass
D71V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                7                 73
  T2               33                136
  T3                4                 18
  T4                2                 14
D71V7, multiclass
       clus
vv      18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0                  24                148
  N1                  12                 46
  N2+N3               10                 42
D71V8, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               27                175
  M1                6                 10
  MX               11                 52
D71V9, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  I                 15                134
  II                12                 49
  III               10                 47
  IV                 7                  9
D71V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      1   45
  18P LOSS WILD-TYPE   18  224
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 1                 18
  YES               45                224
D71V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      8   38
  18P LOSS WILD-TYPE   36  206
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 8                 36
  YES               38                206

Clustering(72) Variable = 18q loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    40  20
  18Q LOSS WILD-TYPE 133  61
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                60                194 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                20                 61 
$`18Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4402 TCGA-05-4405 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 
        3.98         8.02        20.05        26.01        26.01        24.00 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-5375 TCGA-38-4631 
        4.96         2.96         0.99         2.04         8.68        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-6146 TCGA-44-6779 TCGA-44-7669 TCGA-44-7670 
       44.61         5.19         9.93        16.41        18.87        17.46 
TCGA-49-4488 TCGA-49-4505 TCGA-49-4512 TCGA-50-5936 TCGA-50-5946 TCGA-50-6594 
       28.57        14.07        29.75         8.45        11.47        12.16 
TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6972 
       33.37        35.11        38.73        48.62        45.17        48.49 
TCGA-55-6975 TCGA-55-6980 TCGA-55-7281 TCGA-55-7283 TCGA-55-7576 TCGA-55-7725 
        3.88         2.20         0.59         1.12         1.32         1.28 
TCGA-55-7728 TCGA-55-7910 TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 TCGA-67-6216 
        0.79         6.48         0.10        30.44         0.99         0.69 
TCGA-69-7760 TCGA-69-7765 TCGA-73-4666 TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 
        5.06         4.24        20.28         0.46        27.16         5.65 
TCGA-78-7147 TCGA-78-7150 TCGA-78-7155 TCGA-78-7161 TCGA-78-7535 TCGA-78-7536 
       19.27        21.86        38.50         7.04        31.20         8.02 
TCGA-78-7539 TCGA-86-7711 TCGA-91-6836 TCGA-95-7567 TCGA-97-7937 TCGA-97-7941 
       10.75         0.89         0.36         5.36         5.95         0.72 

$`18Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       47.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-35-3615 TCGA-35-4122 
       25.02        25.02        15.02         1.02         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       35.28        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         3.35         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 
        2.70        63.72        32.45        36.49         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        5.03         1.64        18.31        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.11        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6673 
       42.31         3.88        25.51        11.05         6.21         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 
        8.38        31.89        13.74        23.05         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7573 TCGA-55-7574 TCGA-55-7727 
       40.54        71.05        38.47         0.13         3.12         1.02 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        1.78         0.62         0.53         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.59         0.89        13.87         6.12        22.68        13.61 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 
        2.01        52.57        23.38        29.95        15.35         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
        4.01         1.25       163.10        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        19.50        32.09         5.88        40.11        22.29 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 
      104.15       223.96         8.48        88.11        26.53        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 
       28.96        10.55        32.68        13.81         0.36         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        0.07        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7938 TCGA-99-7458 
        0.59         8.22 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.10               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             48.62             223.96 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             8.565             14.470 
[1] "0.1 - 48.6 (8.6)"   "0.0 - 224.0 (14.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     40   34
  18Q LOSS WILD-TYPE  116   98
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               40                116
  MALE                 34                 98
D72V4, continuous
D72V5, multiclass
D72V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               14                 66
  T2               48                121
  T3                8                 14
  T4                4                 12
D72V7, multiclass
       clus
vv      18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0                  40                132
  N1                  19                 39
  N2+N3               14                 38
D72V8, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               50                152
  M1                7                  9
  MX               14                 49
D72V9, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  I                 27                122
  II                22                 39
  III               15                 42
  IV                 8                  8
D72V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      2   72
  18Q LOSS WILD-TYPE   17  197
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 2                 17
  YES               72                197
D72V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     13   61
  18Q LOSS WILD-TYPE   31  183
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                13                 31
  YES               61                183

Clustering(73) Variable = 19p loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    38  30
  19P LOSS WILD-TYPE 135  51
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                68                186 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                30                 51 
$`19P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 
        3.98        14.01         9.96         8.02         2.96        29.95 
TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-35-4123 TCGA-38-4628 
       26.01        25.02        24.00        15.02         5.95        49.02 
TCGA-38-4630 TCGA-38-4631 TCGA-44-5644 TCGA-44-6146 TCGA-44-6779 TCGA-44-7669 
       35.28        11.64        16.37         9.93        16.41        18.87 
TCGA-44-7671 TCGA-49-4486 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       17.59        76.21        14.07         8.81        29.46        43.20 
TCGA-49-6742 TCGA-50-5051 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5944 
       15.02        14.96         8.78        35.87         8.45        12.26 
TCGA-50-6597 TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
       33.37         8.38        23.05        38.73        45.17         2.86 
TCGA-55-6968 TCGA-55-6972 TCGA-55-6975 TCGA-55-7576 TCGA-55-7910 TCGA-64-1676 
       42.48        48.49         3.88         1.32         6.48        56.81 
TCGA-64-5774 TCGA-64-5778 TCGA-67-3770 TCGA-67-3774 TCGA-69-7764 TCGA-73-4666 
       83.84        30.44         0.99         0.59        13.61        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       15.35         0.46         1.25         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7156 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 
       35.93        21.86        32.09         8.48        88.11        31.20 
TCGA-78-7536 TCGA-78-7539 TCGA-86-7713 TCGA-91-6836 TCGA-91-6849 TCGA-95-7039 
        8.02        10.75         0.23         0.36         0.92         1.12 
TCGA-95-7043 TCGA-95-7567 
        0.07         5.36 

$`19P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 
       38.07        19.92        37.02        24.03        47.05        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-5420 
       14.93         8.98        30.02        26.01        25.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 
        8.68        47.61        85.32        37.71        28.37        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-49-4487 TCGA-49-4488 
        1.64        18.31        17.46        13.74        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4512 TCGA-49-6743 
       12.66        35.54        46.72        32.84        29.75        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 
       25.81         9.76        49.28         8.05         9.27        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
       21.47        15.12         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 
        3.88        25.51        11.05        12.16         6.21         0.72 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 
       35.11        31.89        13.74        48.62         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 
        0.79        40.70        15.25         0.92         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.69         0.10        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
       44.38         0.10        16.67        39.52         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.59         2.04         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7152 
       29.95         1.32         4.01       163.10        27.16        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        19.50        38.50         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 
        7.04       104.15       223.96        26.53        53.33        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 
       10.55        32.68        13.81         0.36         0.89         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         0.03         1.28         1.15        26.93         4.18 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.02         9.76         4.18        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.07               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             88.11             223.96 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             14.99              12.41 
[1] "0.1 - 88.1 (15.0)"  "0.0 - 224.0 (12.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     33   46
  19P LOSS WILD-TYPE  123   86
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               33                123
  MALE                 46                 86
D73V4, continuous
D73V5, multiclass
D73V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               16                 64
  T2               52                117
  T3                5                 17
  T4                6                 10
D73V7, multiclass
       clus
vv      19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0                  45                127
  N1                  24                 34
  N2+N3                9                 43
D73V8, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0               58                144
  M1                7                  9
  MX               12                 51
D73V9, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  I                 37                112
  II                23                 38
  III               13                 44
  IV                 6                 10
D73V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      5   74
  19P LOSS WILD-TYPE   14  195
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 5                 14
  YES               74                195
D73V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      9   70
  19P LOSS WILD-TYPE   35  174
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 9                 35
  YES               70                174

Clustering(74) Variable = 19q loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    20  19
  19Q LOSS WILD-TYPE 153  62
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                39                215 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                19                 62 
$`19Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 TCGA-05-4434 
        3.98         9.96         8.02         2.96        29.95        15.02 
TCGA-38-4630 TCGA-44-5644 TCGA-44-6779 TCGA-44-7671 TCGA-49-4486 TCGA-49-4505 
       35.28        16.37        16.41        17.59        76.21        14.07 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-50-5051 TCGA-50-5932 TCGA-50-5944 
        8.81        43.20        15.02        14.96        35.87        12.26 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 
       33.37        23.05        45.17         2.86        42.48        48.49 
TCGA-55-6975 TCGA-64-1676 TCGA-67-3770 TCGA-73-4666 TCGA-73-4670 TCGA-73-4677 
        3.88        56.81         0.99        20.28         0.46         1.25 
TCGA-78-7146 TCGA-78-7149 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-91-6836 
        5.65        35.93        88.11        31.20         8.02         0.36 
TCGA-91-6849 TCGA-95-7039 TCGA-95-7567 
        0.92         1.12         5.36 

$`19Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       20.05        14.93         8.98        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        24.00         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7672 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       13.74        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       32.84        29.46        29.75        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27         8.78        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 
        3.88        25.51        11.05        12.16         6.21         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 
        8.38        35.11        31.89        13.74        38.73        48.62 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
        0.10        30.44        16.67        39.52         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       52.57        23.38        29.95        15.35         1.32         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 
      163.10        27.16        19.27        20.58        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 
        1.28         1.15        26.93         4.18         1.02         9.76 
TCGA-93-7348 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        4.18         0.07        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.36               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             88.11             223.96 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             15.02              12.99 
[1] "0.4 - 88.1 (15.0)"  "0.0 - 224.0 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     21   23
  19Q LOSS WILD-TYPE  135  109
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               21                135
  MALE                 23                109
D74V4, continuous
[1] "Remove cluster labels:" "19Q LOSS MUTATED"      
clus
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4668 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7714         TCGA-93-7348         TCGA-99-7458 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
D74V5, multiclass
D74V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1               10                 70
  T2               25                144
  T3                4                 18
  T4                5                 11
D74V7, multiclass
       clus
vv      19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0                  25                147
  N1                  12                 46
  N2+N3                6                 46
D74V8, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               27                175
  M1                6                 10
  MX                9                 54
D74V9, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  I                 21                128
  II                 8                 53
  III               10                 47
  IV                 5                 11
D74V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4   40
  19Q LOSS WILD-TYPE   15  229
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 4                 15
  YES               40                229
D74V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      6   38
  19Q LOSS WILD-TYPE   38  206
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 6                 38
  YES               38                206

Clustering(75) Variable = 20p loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    19  13
  20P LOSS WILD-TYPE 154  68
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                32                222 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                13                 68 
$`20P LOSS MUTATED`
TCGA-05-4405 TCGA-05-4415 TCGA-05-5423 TCGA-44-2665 TCGA-44-6779 TCGA-49-4505 
       20.05         2.96         4.96        13.15        16.41        14.07 
TCGA-49-4512 TCGA-50-5051 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
       29.75        14.96        77.88         8.45        15.12        12.26 
TCGA-50-6594 TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-6968 TCGA-55-6984 
       12.16        33.37        35.11        38.73        42.48        24.99 
TCGA-55-7725 TCGA-55-7903 TCGA-55-7907 TCGA-64-1678 TCGA-64-5781 TCGA-67-3773 
        1.28         0.62         0.53        39.09        39.52         2.04 
TCGA-67-6216 TCGA-73-4666 TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 
        0.69        20.28         0.46        27.16         5.65        31.20 
TCGA-91-6828 TCGA-91-6848 
        1.22         4.18 

$`20P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
       35.87        21.47         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
        3.88        25.51        11.05         6.21         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        13.74        23.05        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       32.71        60.03        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7727 TCGA-55-7728 
        1.12         0.13         3.12         1.32         1.02         0.79 
TCGA-55-7815 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        1.78         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
       16.67         7.33         0.99         1.97         0.59         0.59 
TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
        4.24         2.01        52.57        23.38        29.95        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7147 TCGA-78-7148 
        1.32         4.01         1.25       163.10        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        26.53         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.89         0.23        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        0.36        26.93         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.12         0.07         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.46               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             77.88             223.96 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            14.515             13.070 
[1] "0.5 - 77.9 (14.5)"  "0.0 - 224.0 (13.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     23   20
  20P LOSS WILD-TYPE  133  112
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE               23                133
  MALE                 20                112
D75V4, continuous
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7910 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4668         TCGA-73-4676 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-75-5122         TCGA-83-5908         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
D75V5, multiclass
D75V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                9                 71
  T2               29                140
  T3                1                 21
  T4                4                 12
D75V7, multiclass
       clus
vv      20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                  19                153
  N1                  12                 46
  N2+N3               12                 40
D75V8, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               29                173
  M1                5                 11
  MX                9                 54
D75V9, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  I                 15                134
  II                12                 49
  III               12                 45
  IV                 4                 12
D75V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3   40
  20P LOSS WILD-TYPE   16  229
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 3                 16
  YES               40                229
D75V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      8   35
  20P LOSS WILD-TYPE   36  209
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 8                 36
  YES               35                209

Clustering(76) Variable = 20q loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED     8   3
  20Q LOSS WILD-TYPE 165  78
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                11                243 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 78 
$`20Q LOSS MUTATED`
TCGA-05-4405 TCGA-05-4415 TCGA-50-5051 TCGA-50-5936 TCGA-53-7624 TCGA-64-1678 
       20.05         2.96        14.96         8.45        35.11        39.09 
TCGA-67-3773 TCGA-67-6216 TCGA-73-4675 TCGA-78-7146 TCGA-91-6828 
        2.04         0.69         1.32         5.65         1.22 

$`20Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72         8.38        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
        0.69         0.10        56.81        20.65        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         1.97         0.59         0.59         0.89 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        0.46         4.01         1.25       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6830 
       13.81         0.36         0.89         0.23        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.69               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             39.09             223.96 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              5.65              13.74 
[1] "0.7 - 39.1 (5.7)"   "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
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        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
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        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      8    7
  20Q LOSS WILD-TYPE  148  125
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                8                148
  MALE                  7                125
D76V4, continuous
D76V5, multiclass
D76V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                3                 77
  T2               10                159
  T3                1                 21
  T4                1                 15
D76V7, multiclass
       clus
vv      20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                   8                164
  N1                   3                 55
  N2+N3                4                 48
D76V8, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0               13                189
  M1                1                 15
  MX                1                 62
D76V9, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  I                  6                143
  II                 3                 58
  III                5                 52
  IV                 1                 15
D76V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      1   14
  20Q LOSS WILD-TYPE   18  255
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 1                 18
  YES               14                255
D76V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      2   13
  20Q LOSS WILD-TYPE   42  231
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 2                 42
  YES               13                231

Clustering(77) Variable = 21q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    23  13
  21Q LOSS WILD-TYPE 150  68
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                36                218 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                13                 68 
$`21Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-05-4432 TCGA-44-5643 TCGA-44-5644 
        9.96        14.93        29.95        25.02         3.48        16.37 
TCGA-44-6779 TCGA-44-7660 TCGA-50-5051 TCGA-50-5932 TCGA-50-5935 TCGA-50-5944 
       16.41         5.33        14.96        35.87        21.47        12.26 
TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 
        8.38        23.05        38.73         2.86        42.48        48.49 
TCGA-55-7910 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-69-7760 TCGA-73-4659 
        6.48        55.40        83.84         0.10         5.06        23.38 
TCGA-73-4668 TCGA-73-4670 TCGA-78-7146 TCGA-78-7148 TCGA-78-7153 TCGA-78-7154 
       15.35         0.46         5.65        20.58        24.99        19.50 
TCGA-78-7167 TCGA-78-7536 TCGA-86-7713 TCGA-91-7771 TCGA-95-7043 TCGA-97-7547 
       88.11         8.02         0.23         1.02         0.07        47.18 

$`21Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 
       47.05         8.02        20.05         2.96         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       36.49         9.80         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 
        9.76        49.28         8.05         9.27         8.78        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-1596 
        0.72        35.11        31.89        13.74        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         0.53         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 
       56.81        20.65        39.09        37.02        44.38        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        2.04         0.59         0.89         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
       22.68        13.61         4.24         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
       20.28         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7155 TCGA-78-7156 
       19.27        35.93        21.86        39.48        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
        8.48        26.53        31.20        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 
       10.55        32.68        13.81         0.36         0.89         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 
        4.18         0.92         9.76         4.18         1.12         5.36 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             88.11             223.96 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            15.860             12.825 
[1] "0.1 - 88.1 (15.9)"  "0.0 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     16   26
  21Q LOSS WILD-TYPE  140  106
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               16                140
  MALE                 26                106
D77V4, continuous
D77V5, multiclass
D77V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               10                 70
  T2               26                143
  T3                3                 19
  T4                3                 13
D77V7, multiclass
       clus
vv      21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0                  26                146
  N1                   7                 51
  N2+N3                9                 43
D77V8, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               30                172
  M1                3                 13
  MX                8                 55
D77V9, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  I                 21                128
  II                 8                 53
  III               11                 46
  IV                 2                 14
D77V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      4   38
  21Q LOSS WILD-TYPE   15  231
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 4                 15
  YES               38                231
D77V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      6   36
  21Q LOSS WILD-TYPE   38  208
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 6                 38
  YES               36                208

Clustering(78) Variable = 22q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    33  23
  22Q LOSS WILD-TYPE 140  58
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                56                198 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                23                 58 
$`22Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4418 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
        9.96        24.03         8.98        26.01        25.02        24.00 
TCGA-35-5375 TCGA-38-4628 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.68        49.02         6.21         4.60         3.48        16.37 
TCGA-44-6778 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-50-5051 
       36.49        46.72        14.07         8.81        29.46        14.96 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-6591 
        9.27        35.87        21.47         8.45        15.12         3.88 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-55-5899 TCGA-55-6968 
       33.37         0.72         8.38        35.11         2.86        42.48 
TCGA-55-6972 TCGA-55-7903 TCGA-55-7910 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 
       48.49         0.62         6.48        56.81        55.40        44.38 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-69-7760 TCGA-69-7764 TCGA-73-4662 
       83.84        30.44        16.67         5.06        13.61        29.95 
TCGA-73-4668 TCGA-73-4677 TCGA-78-7146 TCGA-78-7159 TCGA-78-7163 TCGA-78-7167 
       15.35         1.25         5.65        40.11       223.96        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-86-7711 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
       31.20         8.02         0.89        41.33         1.28         0.36 
TCGA-95-7039 TCGA-95-7567 
        1.12         5.36 

$`22Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       26.01        25.02        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        8.32         6.44         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 
       28.57        12.66        35.54        32.84        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.78        77.88         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-53-7626 
       42.31        25.51        11.05        12.16         6.21        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       13.74        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
       32.61         0.79        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 
        1.78         0.53         0.69         0.10        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       37.02         0.10        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68         4.24         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 
       20.28         0.46         1.32         4.01       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 
       19.50        38.50        32.09         5.88        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      104.15         8.48        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 
       10.55        32.68        13.81         0.36         0.23         1.22 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        9.76         4.18         0.07        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.36               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            223.96             163.10 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            15.235             12.460 
[1] "0.4 - 224.0 (15.2)" "0.0 - 163.1 (12.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7727 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1676         TCGA-64-1677 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1679         TCGA-64-1680 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5774         TCGA-64-5775 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-69-7760         TCGA-69-7761         TCGA-69-7763 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-69-7764         TCGA-69-7765         TCGA-71-6725 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     29   36
  22Q LOSS WILD-TYPE  127   96
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               29                127
  MALE                 36                 96
D78V4, continuous
D78V5, multiclass
D78V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1               17                 63
  T2               41                128
  T3                5                 17
  T4                2                 14
D78V7, multiclass
       clus
vv      22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0                  38                134
  N1                  14                 44
  N2+N3               12                 40
D78V8, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               51                151
  M1                4                 12
  MX                9                 54
D78V9, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  I                 34                115
  II                14                 47
  III               14                 43
  IV                 3                 13
D78V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      7   58
  22Q LOSS WILD-TYPE   12  211
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 7                 12
  YES               58                211
D78V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     10   55
  22Q LOSS WILD-TYPE   34  189
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                10                 34
  YES               55                189

Clustering(79) Variable = Xq loss mutation analysis
D79V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED     3   3
  XQ LOSS WILD-TYPE 170  78
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               248 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                78 
$`XQ LOSS MUTATED`
TCGA-49-4507 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-69-7764 TCGA-78-7536 
        8.81         8.38        23.05        48.62        13.61         8.02 

$`XQ LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       18.31        18.87        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
       35.11        31.89        13.74        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 
      223.96         8.48        88.11        26.53        31.20        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             8.02              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            48.62            223.96 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           11.210            13.445 
[1] "8.0 - 48.6 (11.2)"  "0.0 - 224.0 (13.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-91-6828        TCGA-91-6829 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-95-7039        TCGA-95-7043 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    4
  XQ LOSS WILD-TYPE  154  128
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               2               154
  MALE                 4               128
D79V4, continuous
D79V5, multiclass
D79V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               3                77
  T2               2               167
  T3               1                21
  T4               0                16
D79V7, multiclass
       clus
vv      XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0                  4               168
  N1                  1                57
  N2+N3               1                51
D79V8, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0               5               197
  M1               0                16
  MX               1                62
D79V9, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  I                 4               145
  II                0                61
  III               2                55
  IV                0                16
D79V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    4
  XQ LOSS WILD-TYPE   17  265
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                2                17
  YES               4               265
D79V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      1    5
  XQ LOSS WILD-TYPE   43  239
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                1                43
  YES               5               239
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
