
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUAD/2026659/1.GDAC_mergedClustering.Finished/LUAD.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD/1971864/1.GDAC_clinicalDataPicker.Finished/LUAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=294, in cluster file=375, common to both=292
[1]  10 292
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
 5  9 12  6 
 1  2  3  4 
 5  9 12  6 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
 7 13 12 
 1  2  3 
 7 13 12 
[1] "CN_CNMF"
[1] 3
  1   2   3 
 85 126  77 
  1   2   3 
 85 126  77 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
54 81 87 
 1  2  3 
54 81 87 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
89 70 70 
 1  2  3 
89 70 70 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
22 72 82 53 
 1  2  3  4 
22 72 82 53 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4  5 
83 60 45 66 32 
 1  2  3  4  5 
83 60 45 66 32 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
122  87  77 
  1   2   3 
122  87  77 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
111 113  60 
  1   2   3 
111 113  60 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
126  15 143 
  1   2   3 
126  15 143 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NEOADJUVANTTHERAPY"                    
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 292 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
         863         1073          354         1357          158           NA 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
         574          581          400          529          103          480 
TCGA-44-2664 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
         383          400           97          246          311          253 
TCGA-44-3917 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
         392          196          189          140          106          498 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
         208            9          102          302          236           95 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
         165           82         1938           NA         1110           NA 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
         298          162          153           50          557           NA 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
         531          535          418         2318           NA           NA 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
          NA         1081         1421          428          999          268 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
         896           NA         1314          457          369          395 
TCGA-49-6745 TCGA-49-6761 TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
         150            1           NA           NA         2174         1485 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
         455          785          297         1499          245          282 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
         267         1091         2369          653          257          460 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
         285          135          373          349           NA           NA 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
          NA           NA           NA           NA         1015           NA 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
         255         1068          970          418          701         1178 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
        1479         1374           87            2          992           24 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
          NA         1238           NA           28         1475           NA 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
          NA           NA           67           NA           NA         1826 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7227 TCGA-55-7281 
          NA         1233         2161         1170           61           18 
TCGA-55-7283 TCGA-55-7570 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
          34           NA            4           95           40           39 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7816 TCGA-55-7903 TCGA-55-7907 
          31           24           54           31           19           16 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
         197           21            3         1728          628         1189 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
        1685         1126           NA         2550            3          926 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         507         1202          223           30           60           18 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
          62           18           NA           27           21          422 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
         154          186          690          414          129           61 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        1599          711          911          617          467           14 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 TCGA-75-5125 TCGA-75-5126 
          40          122           38           NA           NA           NA 
TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 TCGA-75-6207 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6211 TCGA-75-6212 TCGA-75-6214 TCGA-75-7025 TCGA-75-7027 TCGA-75-7030 
          NA           NA           NA           NA           NA           NA 
TCGA-75-7031 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
        1093           NA         1201          760           NA           NA 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
          NA           NA         1220          678          214           NA 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
        6812           NA           NA           NA           NA           NA 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-80-5607 
          NA          327          881           NA          994           NA 
TCGA-80-5608 TCGA-80-5611 TCGA-83-5908 TCGA-86-6562 TCGA-86-6851 TCGA-86-7701 
          NA           NA          420           NA           NA           11 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7714 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
          27            7           NA           37           NA            1 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 
          39           35           11           NA          819          127 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
          28           31          297          127           34            2 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
         163          963         1435         1476         1331          263 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
         181           NA           22          250 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=80,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=179,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=74,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
151  61  58  17 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 292 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 81 170  23  16 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 81 170  23  16 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 81 170  23  16 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 81 170  23  16 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
174  59  51   1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
  174    59    52 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
174  59  51   1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
  174    59    52 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
151  61  58  17 
[1] "table(vv)"
vv
  I  II III  IV 
151  61  58  17 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
151  61  58  17 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
151  61  58  17 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1  4  0
  subtype2  8  1
  subtype3 11  1
  subtype4  4  2
subtype1 subtype2 subtype3 subtype4 
       4        9       12        6 
subtype1 subtype2 subtype3 subtype4 
       0        1        1        2 
$subtype1
TCGA-35-4123 TCGA-44-2665 TCGA-44-3919 TCGA-55-1595 
        5.95        13.15         6.21        48.62 

$subtype2
TCGA-05-4249 TCGA-05-4250 TCGA-35-4122 TCGA-44-2656 TCGA-44-2662 TCGA-44-2668 
       38.07         3.98         7.36        19.10        15.78         8.09 
TCGA-44-3398 TCGA-44-3918 TCGA-64-1676 
        8.32         6.44        56.81 

$subtype3
TCGA-35-3615 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 
        0.46        18.87        13.15        17.39         3.39         3.19 
TCGA-44-4112 TCGA-64-1680 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        4.60        37.02         0.99         0.59         2.04         0.59 

$subtype4
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-64-1677 TCGA-64-1678 TCGA-67-3771 
       23.05        38.73        45.17        20.65        39.09         1.97 

subtype1 subtype2 subtype3 subtype4 
    5.95     3.98     0.46     1.97 
subtype1 subtype2 subtype3 subtype4 
   48.62    56.81    37.02    45.17 
subtype1 subtype2 subtype3 subtype4 
    9.68     8.32     3.29    30.89 
[1] "6.0 - 48.6 (9.7)"  "4.0 - 56.8 (8.3)"  "0.5 - 37.0 (3.3)" 
[4] "2.0 - 45.2 (30.9)"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
D1V2, continuous
D1V3, binary
          cls
clus       0 1
  subtype1 3 2
  subtype2 3 6
  subtype3 9 3
  subtype4 3 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    2
  subtype2    3    6
  subtype3    9    3
  subtype4    3    3
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        3        3        9        3
  MALE          2        6        3        3
D1V4, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype4"              
clus
subtype1 subtype2 subtype4 
       1        1        1 
character(0)
D1V5, multiclass
D1V6, multiclass
D1V7, multiclass
D1V8, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0        4        9       11        6
  M1        1        0        1        0
D1V9, multiclass
D1V10, binary
          cls
clus        0  1
  subtype1  0  5
  subtype2  0  9
  subtype3  1 11
  subtype4  0  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    5
  subtype2    0    9
  subtype3    1   11
  subtype4    0    6
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        1        0
  YES        5        9       11        6
D1V11, binary
          cls
clus       0 1
  subtype1 1 4
  subtype2 1 8
  subtype3 3 9
  subtype4 1 5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1    4
  subtype2    1    8
  subtype3    3    9
  subtype4    1    5
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        1        3        1
  YES        4        8        9        5

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1  5  2
  subtype2 12  1
  subtype3 10  1
subtype1 subtype2 subtype3 
       7       13       11 
subtype1 subtype2 subtype3 
       2        1        1 
$subtype1
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-64-1677 TCGA-64-1678 
       23.05        38.73        48.62        45.17        20.65        39.09 
TCGA-67-3771 
        1.97 

$subtype2
TCGA-35-3615 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        0.46        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2666 TCGA-44-4112 TCGA-64-1680 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
        3.19         4.60        37.02         0.99         0.59         2.04 
TCGA-67-3774 
        0.59 

$subtype3
TCGA-05-4249 TCGA-05-4250 TCGA-35-4122 TCGA-35-4123 TCGA-44-2662 TCGA-44-2665 
       38.07         3.98         7.36         5.95        15.78        13.15 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-64-1676 
        8.09         8.32         6.44         6.21        56.81 

subtype1 subtype2 subtype3 
    1.97     0.46     3.98 
subtype1 subtype2 subtype3 
   48.62    37.02    56.81 
subtype1 subtype2 subtype3 
   38.73     3.39     8.09 
[1] "2.0 - 48.6 (38.7)" "0.5 - 37.0 (3.4)"  "4.0 - 56.8 (8.1)" 
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus       0 1
  subtype1 4 3
  subtype2 9 4
  subtype3 5 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4    3
  subtype2    9    4
  subtype3    5    7
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        4        9        5
  MALE          3        4        7
D2V4, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype3"              
clus
subtype1 subtype3 
       1        2 
character(0)
D2V5, multiclass
D2V6, multiclass
D2V7, multiclass
D2V8, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0        7       12       11
  M1        0        1        1
D2V9, multiclass
D2V10, binary
          cls
clus        0  1
  subtype1  0  7
  subtype2  1 12
  subtype3  0 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    7
  subtype2    1   12
  subtype3    0   12
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        0
  YES        7       12       12
D2V11, binary
          cls
clus        0  1
  subtype1  1  6
  subtype2  3 10
  subtype3  2 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1    6
  subtype2    3   10
  subtype3    2   10
     clus
vv    subtype1 subtype2 subtype3
  NO         1        3        2
  YES        6       10       10

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 49 26
  subtype2 76 37
  subtype3 48 18
subtype1 subtype2 subtype3 
      75      113       66 
subtype1 subtype2 subtype3 
      26       37       18 
$subtype1
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4426 TCGA-05-5423 TCGA-05-5425 
       47.05         8.02        20.05        26.01         4.96         2.96 
TCGA-35-4123 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
        5.95        28.37        11.64        44.61         5.19        19.10 
TCGA-44-2659 TCGA-44-2662 TCGA-44-3919 TCGA-44-4112 TCGA-44-6147 TCGA-44-6774 
       17.39        15.78         6.21         4.60         7.76         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-7660 TCGA-44-7662 TCGA-49-4488 TCGA-49-4490 
        2.70        32.45         5.33         1.64        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-6743 TCGA-50-5045 TCGA-50-5930 
       46.72        14.07        29.75        12.13        71.47         9.27 
TCGA-50-5931 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
        8.78        11.47         3.88        11.05        12.16        33.37 
TCGA-53-7624 TCGA-55-1592 TCGA-55-6543 TCGA-55-6969 TCGA-55-6972 TCGA-55-6979 
       35.11        23.05         0.07        40.70        48.49         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6985 TCGA-55-7727 TCGA-55-7903 TCGA-64-1676 
        2.20        45.34        40.54         1.02         0.62        56.81 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5778 TCGA-67-3770 TCGA-67-6215 TCGA-67-6217 
       55.40        44.38        30.44         0.99         0.89        13.87 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7147 
        4.24         2.01         1.32         4.01       163.10        19.27 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7535 TCGA-78-7539 TCGA-83-5908 TCGA-86-7711 
       38.50       223.96        31.20        10.75        13.81         0.89 
TCGA-91-6829 TCGA-91-6847 TCGA-91-6848 TCGA-95-7039 TCGA-97-7553 TCGA-97-7554 
       41.33        26.93         4.18         1.12        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-99-7458 
        5.95         0.59         8.22 

$subtype2
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4418 
       38.07        19.92        14.01         9.96        24.03         8.98 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 
       25.02        24.00        15.02         1.02         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        0.46         7.36        47.61        85.32        37.71        35.28 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       26.30        18.87        13.15         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        8.09        10.22         8.32         6.84         3.35         9.93 
TCGA-44-6148 TCGA-44-6776 TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 TCGA-44-7672 
        3.12        63.72         9.80         5.03        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 TCGA-49-4506 TCGA-49-4514 TCGA-49-6742 
       76.21        28.11        35.54        32.84        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
       12.99         4.93        20.48        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 
       49.28         8.05         8.45        15.12         4.44        42.31 
TCGA-50-6592 TCGA-50-6595 TCGA-50-6673 TCGA-53-7626 TCGA-55-6642 TCGA-55-6968 
       25.51         6.21         0.72        31.89        32.61        42.48 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6982 TCGA-55-6983 
       15.25         0.92         3.88         5.46        32.71        60.03 
TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       24.99        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 TCGA-55-7911 TCGA-55-7914 
        3.12         1.28         0.79         1.78         0.69         0.10 
TCGA-64-1680 TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       37.02        39.52         7.33         0.59         2.04         0.59 
TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-73-4658 TCGA-73-4659 TCGA-73-4677 
        0.69         6.12        22.68        52.57        23.38         1.25 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 
       20.58        21.86        39.48        24.99        32.09         5.88 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
       22.29       104.15         8.48        53.33        28.96        10.55 
TCGA-78-7633 TCGA-91-6830 TCGA-91-6835 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
       32.68         0.03         1.15         0.92         1.02         9.76 
TCGA-93-7348 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7941 
        4.18        31.66        47.18        48.53         0.72 

$subtype3
TCGA-05-4250 TCGA-05-4390 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        3.98        37.02         2.96        14.93        29.95        30.02 
TCGA-05-4427 TCGA-05-4432 TCGA-35-5375 TCGA-38-4628 TCGA-44-3918 TCGA-44-5643 
       26.01        25.02         8.68        49.02         6.44         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6778 TCGA-44-6779 TCGA-44-7667 TCGA-44-7669 
       16.37         0.30        36.49        16.41        18.31        18.87 
TCGA-44-7670 TCGA-49-4507 TCGA-49-4510 TCGA-49-6761 TCGA-50-5051 TCGA-50-5932 
       17.46         8.81        29.46         0.03        14.96        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 TCGA-50-5944 TCGA-50-7109 TCGA-53-7813 
       77.88        21.47         9.37        12.26         8.38        13.74 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6712 TCGA-55-7576 
       38.73        48.62        45.17         2.86         0.79         1.32 
TCGA-55-7907 TCGA-55-7910 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 
        0.53         6.48        20.65        39.09        83.84         0.10 
TCGA-64-5779 TCGA-67-3771 TCGA-69-7760 TCGA-69-7764 TCGA-73-4662 TCGA-73-4666 
       16.67         1.97         5.06        13.61        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 TCGA-78-7149 TCGA-78-7154 
       15.35         0.46        27.16         5.65        35.93        19.50 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-86-7701 
       40.11         7.04        88.11        26.53         8.02         0.36 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6831 TCGA-91-6836 TCGA-95-7043 TCGA-95-7567 
        0.23         1.22         1.28         0.36         0.07         5.36 

subtype1 subtype2 subtype3 
    0.07     0.03     0.03 
subtype1 subtype2 subtype3 
  223.96   104.15    88.11 
subtype1 subtype2 subtype3 
  12.130   13.150   14.945 
[1] "0.1 - 224.0 (12.1)" "0.0 - 104.2 (13.2)" "0.0 - 88.1 (14.9)" 
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype1"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype1"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 49 36
  subtype2 68 58
  subtype3 39 38
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   49   36
  subtype2   68   58
  subtype3   39   38
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       49       68       39
  MALE         36       58       38
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
D3V7, multiclass
D3V8, multiclass
D3V9, multiclass
D3V10, binary
          cls
clus         0   1
  subtype1   5  80
  subtype2   6 120
  subtype3   8  69
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   80
  subtype2    6  120
  subtype3    8   69
     clus
vv    subtype1 subtype2 subtype3
  NO         5        6        8
  YES       80      120       69
D3V11, binary
          cls
clus         0   1
  subtype1  16  69
  subtype2  16 110
  subtype3  12  65
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16   69
  subtype2   16  110
  subtype3   12   65
     clus
vv    subtype1 subtype2 subtype3
  NO        16       16       12
  YES       69      110       65

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 35 11
  subtype2 53 18
  subtype3 46 31
subtype1 subtype2 subtype3 
      46       71       77 
subtype1 subtype2 subtype3 
      11       18       31 
$subtype1
TCGA-05-4384 TCGA-05-5423 TCGA-05-5715 TCGA-38-6178 TCGA-44-5645 TCGA-44-6146 
       14.01         4.96         2.04         5.19         6.84         9.93 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-7659 TCGA-49-4512 TCGA-50-5935 
        3.12         2.70        63.72         9.80        29.75        21.47 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6594 TCGA-53-7626 TCGA-55-6543 TCGA-55-6970 
        4.44        12.26        12.16        31.89         0.07        15.25 
TCGA-55-6972 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-7227 TCGA-55-7573 
       48.49        60.03        40.54        71.05         2.01         0.13 
TCGA-55-7725 TCGA-64-1681 TCGA-64-5778 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.28        44.38        30.44         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 TCGA-78-7143 TCGA-78-7148 TCGA-78-7156 
        5.06        22.68        13.61       163.10        20.58        32.09 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7537 TCGA-91-6849 TCGA-93-7348 TCGA-97-7546 
      104.15       223.96        53.33         0.92         4.18        31.66 
TCGA-97-7547 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       47.18         0.59         0.72         8.22 

$subtype2
TCGA-05-4390 TCGA-05-4396 TCGA-05-4405 TCGA-05-4417 TCGA-05-4427 TCGA-05-4433 
       37.02         9.96        20.05        14.93        26.01        24.00 
TCGA-05-5429 TCGA-35-5375 TCGA-38-4632 TCGA-44-5644 TCGA-44-6147 TCGA-44-7667 
        0.99         8.68        44.61        16.37         7.76        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-49-4488 TCGA-49-6761 TCGA-50-5051 
       18.87        17.46        17.59        28.57         0.03        14.96 
TCGA-50-5932 TCGA-50-5946 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7813 
       35.87        11.47        33.37         0.72         8.38        13.74 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-7281 TCGA-55-7283 TCGA-55-7576 
        2.86        32.61        42.48         0.59         1.12         1.32 
TCGA-55-7727 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7914 TCGA-64-5774 
        1.02         0.62         0.53         6.48         0.10        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-69-7765 TCGA-71-6725 TCGA-73-4676 TCGA-78-7145 
        0.10        16.67         4.24         2.01         4.01        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        35.93        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7535 
       38.50         5.88        40.11         7.04        88.11        31.20 
TCGA-78-7536 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7713 
        8.02        10.75        28.96        32.68         0.36         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-91-7771 
        1.22        41.33         1.28         0.36        26.93         1.02 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7554 TCGA-97-7937 
        1.12         0.07         5.36         8.65         5.95 

$subtype3
TCGA-05-4415 TCGA-05-4424 TCGA-05-5420 TCGA-05-5425 TCGA-38-4631 TCGA-38-7271 
        2.96        30.02         1.02         2.96        11.64        26.30 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6774 TCGA-44-6777 TCGA-44-6778 
        3.48         0.30         3.35         5.42        32.45        36.49 
TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7672 TCGA-49-4487 
       16.41         5.33         5.03         1.64        13.74        28.11 
TCGA-49-4490 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       12.66        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        8.05         9.27         8.78        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
        9.37        42.31         3.88        25.51        11.05         6.21 
TCGA-53-7624 TCGA-55-6712 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
       35.11         0.79        40.70         0.92         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6987 
        7.76         2.20        45.34        32.71        24.99        38.47 
TCGA-55-7574 TCGA-55-7728 TCGA-55-7815 TCGA-55-7816 TCGA-55-7911 TCGA-64-1679 
        3.12         0.79         1.78         1.02         0.69        55.40 
TCGA-64-5781 TCGA-64-5815 TCGA-69-7761 TCGA-73-4658 TCGA-78-7150 TCGA-78-7160 
       39.52         7.33         6.12        52.57        21.86        22.29 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7542 TCGA-83-5908 TCGA-86-7711 TCGA-91-6830 
        8.48        26.53        10.55        13.81         0.89         0.03 
TCGA-91-6835 TCGA-91-6848 TCGA-93-7347 TCGA-97-7552 TCGA-97-7553 
        1.15         4.18         9.76        48.53        43.76 

subtype1 subtype2 subtype3 
    0.07     0.03     0.03 
subtype1 subtype2 subtype3 
  223.96    88.11    77.88 
subtype1 subtype2 subtype3 
  12.935   10.750   10.550 
[1] "0.1 - 224.0 (12.9)" "0.0 - 88.1 (10.8)"  "0.0 - 77.9 (10.6)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 34 20
  subtype2 38 43
  subtype3 48 39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34   20
  subtype2   38   43
  subtype3   48   39
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       34       38       48
  MALE         20       43       39
D4V4, continuous
D4V5, multiclass
D4V6, multiclass
D4V7, multiclass
D4V8, multiclass
D4V9, multiclass
D4V10, binary
          cls
clus        0  1
  subtype1  2 52
  subtype2  3 78
  subtype3 10 77
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   52
  subtype2    3   78
  subtype3   10   77
     clus
vv    subtype1 subtype2 subtype3
  NO         2        3       10
  YES       52       78       77
D4V11, binary
          cls
clus        0  1
  subtype1  9 45
  subtype2 11 70
  subtype3 12 75
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9   45
  subtype2   11   70
  subtype3   12   75
     clus
vv    subtype1 subtype2 subtype3
  NO         9       11       12
  YES       45       70       75

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 47 27
  subtype2 50 17
  subtype3 44 22
subtype1 subtype2 subtype3 
      74       67       66 
subtype1 subtype2 subtype3 
      27       17       22 
$subtype1
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        3.98        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4430 TCGA-05-4434 TCGA-05-5423 TCGA-05-5429 
       20.05        14.93        25.02        15.02         4.96         0.99 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2661 TCGA-44-2664 TCGA-44-2665 TCGA-44-3918 
        5.19        19.10         3.39        12.59        13.15         6.44 
TCGA-44-3919 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6775 
        6.21         6.84         3.35         9.93         7.76         2.70 
TCGA-44-6777 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 
       32.45        28.57        35.54        46.72        14.07        29.75 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 
       12.13         4.93        71.47        48.82         9.76        49.28 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
        8.45        15.12         9.37         4.44        12.26        42.31 
TCGA-50-6593 TCGA-50-6597 TCGA-50-6673 TCGA-55-1592 TCGA-55-1596 TCGA-55-6543 
       11.05        33.37         0.72        23.05        45.17         0.07 
TCGA-55-6712 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-7573 TCGA-55-7911 
        0.79         7.76        45.34        32.71         0.13         0.69 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-67-6215 TCGA-67-6216 
       55.40        37.02        44.38        30.44         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-71-6725 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 
       13.87         5.06         2.01         1.32         4.01       163.10 
TCGA-78-7145 TCGA-78-7535 TCGA-83-5908 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
       27.16        31.20        13.81         1.22        41.33         0.03 
TCGA-91-6835 TCGA-95-7039 
        1.15         1.12 

$subtype2
TCGA-05-4249 TCGA-05-4426 TCGA-05-5420 TCGA-05-5425 TCGA-35-3615 TCGA-38-4626 
       38.07        26.01         1.02         2.96         0.46        85.32 
TCGA-38-4627 TCGA-44-2657 TCGA-44-3396 TCGA-44-3398 TCGA-44-6774 TCGA-44-6776 
       37.71        13.15        10.22         8.32         5.42        63.72 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        9.80         5.03        17.46        17.59        13.74        76.21 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5051 TCGA-50-5930 
       29.46        43.20        15.02        12.99        14.96         9.27 
TCGA-50-5932 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-6970 TCGA-55-7574 
       35.87         8.38        31.89        13.74        15.25         3.12 
TCGA-55-7728 TCGA-55-7815 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.79         1.78         6.12        22.68        13.61         4.24 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4670 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       52.57        23.38         0.46        19.27        20.58        35.93 
TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       39.48        32.09         5.88        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        88.11        53.33        10.75        28.96 
TCGA-78-7633 TCGA-86-7713 TCGA-91-6849 TCGA-91-7771 TCGA-93-7348 TCGA-97-7546 
       32.68         0.23         0.92         1.02         4.18        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

$subtype3
TCGA-05-4418 TCGA-05-4420 TCGA-05-4427 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
        8.98        29.95        26.01         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4629 TCGA-44-2668 TCGA-44-3917 TCGA-44-4112 
        8.68        47.61        28.37         8.09        12.89         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6148 TCGA-44-6778 TCGA-44-6779 
        3.48        16.37         0.30         3.12        36.49        16.41 
TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-49-4487 TCGA-49-4506 
        5.33         1.64        18.31        18.87        28.11        32.84 
TCGA-49-4507 TCGA-49-6761 TCGA-50-5044 TCGA-50-5072 TCGA-50-5931 TCGA-50-5933 
        8.81         0.03        20.48         8.05         8.78        77.88 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-53-7624 
       11.47         3.88        25.51        12.16         6.21        35.11 
TCGA-55-1594 TCGA-55-5899 TCGA-55-6969 TCGA-55-6971 TCGA-55-6978 TCGA-55-7910 
       38.73         2.86        40.70         0.92         5.46         6.48 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 
       56.81        20.65        39.09        83.84        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-78-7146 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 
        7.33         1.97         5.65        21.86        24.99        19.50 
TCGA-78-7155 TCGA-78-7159 TCGA-78-7536 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 
       38.50        40.11         8.02        10.55         0.36         0.89 
TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-95-7043 TCGA-95-7567 
        1.28         0.36        26.93         4.18         0.07         5.36 

subtype1 subtype2 subtype3 
    0.03     0.23     0.03 
subtype1 subtype2 subtype3 
  163.10   223.96    83.84 
subtype1 subtype2 subtype3 
  12.195   13.740    9.765 
[1] "0.0 - 163.1 (12.2)" "0.2 - 224.0 (13.7)" "0.0 - 83.8 (9.8)"  
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 55 34
  subtype2 37 33
  subtype3 34 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   55   34
  subtype2   37   33
  subtype3   34   36
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       55       37       34
  MALE         34       33       36
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
D5V7, multiclass
D5V8, multiclass
D5V9, multiclass
D5V10, binary
          cls
clus        0  1
  subtype1  6 83
  subtype2  4 66
  subtype3  5 65
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   83
  subtype2    4   66
  subtype3    5   65
     clus
vv    subtype1 subtype2 subtype3
  NO         6        4        5
  YES       83       66       65
D5V11, binary
          cls
clus        0  1
  subtype1 15 74
  subtype2 15 55
  subtype3  7 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   74
  subtype2   15   55
  subtype3    7   63
     clus
vv    subtype1 subtype2 subtype3
  NO        15       15        7
  YES       74       55       63

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 14  4
  subtype2 46 22
  subtype3 43 27
  subtype4 38 13
subtype1 subtype2 subtype3 subtype4 
      18       68       70       51 
subtype1 subtype2 subtype3 subtype4 
       4       22       27       13 
$subtype1
TCGA-05-4405 TCGA-05-5420 TCGA-44-6145 TCGA-44-6776 TCGA-49-4505 TCGA-50-5044 
       20.05         1.02         3.35        63.72        14.07        20.48 
TCGA-50-6673 TCGA-55-6970 TCGA-55-7573 TCGA-64-5778 TCGA-78-7152 TCGA-78-7160 
        0.72        15.25         0.13        30.44        39.48        22.29 
TCGA-91-6830 TCGA-91-6835 TCGA-91-7771 TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
        0.03         1.15         1.02         5.95         0.72         8.22 

$subtype2
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4427 TCGA-05-5715 TCGA-35-4122 
       14.93         8.98        29.95        26.01         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4629 TCGA-44-2668 TCGA-44-3917 
        5.95         8.68        47.61        28.37         8.09        12.89 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6148 TCGA-44-6774 
        4.60         3.48        16.37         0.30         3.12         5.42 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       36.49        16.41         5.33         1.64        18.31        18.87 
TCGA-44-7670 TCGA-49-4487 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6743 
       17.46        28.11        32.84         8.81        43.20        12.13 
TCGA-49-6761 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5946 
        0.03         8.05         9.27         8.78        77.88        11.47 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 
       25.51        12.16         6.21         8.38        35.11        13.74 
TCGA-55-5899 TCGA-55-6971 TCGA-55-6978 TCGA-55-7815 TCGA-55-7910 TCGA-64-1677 
        2.86         0.92         5.46         1.78         6.48        20.65 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-69-7760 
       39.09        83.84        16.67        39.52         1.97         5.06 
TCGA-69-7765 TCGA-78-7146 TCGA-78-7150 TCGA-78-7154 TCGA-78-7155 TCGA-78-7159 
        4.24         5.65        21.86        19.50        38.50        40.11 
TCGA-78-7166 TCGA-78-7536 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 TCGA-91-6831 
        8.48         8.02        10.55         0.36         0.89         1.28 
TCGA-91-6836 TCGA-95-7043 
        0.36         0.07 

$subtype3
TCGA-05-4249 TCGA-05-4250 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4430 
       38.07         3.98        24.03        47.05         8.02        25.02 
TCGA-05-4434 TCGA-05-5423 TCGA-38-4627 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       15.02         4.96        37.71         5.19        19.10        13.15 
TCGA-44-2661 TCGA-44-2664 TCGA-44-2665 TCGA-44-3918 TCGA-44-3919 TCGA-44-5645 
        3.39        12.59        13.15         6.44         6.21         6.84 
TCGA-44-6147 TCGA-44-6775 TCGA-44-6777 TCGA-49-4488 TCGA-49-4501 TCGA-49-4512 
        7.76         2.70        32.45        28.57        46.72        29.75 
TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 TCGA-50-5936 
        4.93        71.47        48.82         9.76        49.28         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37         4.44        12.26        42.31         3.88 
TCGA-50-6593 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6712 
       11.05        33.37        23.05        38.73        45.17         0.79 
TCGA-55-6969 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-7911 TCGA-64-1676 
       40.70         7.76        45.34        32.71         0.69        56.81 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5815 TCGA-67-6215 TCGA-67-6216 
       55.40        37.02        44.38         7.33         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
       13.87         2.01         4.01       163.10        27.16        19.27 
TCGA-78-7158 TCGA-78-7535 TCGA-78-7539 TCGA-83-5908 TCGA-91-6828 TCGA-91-6829 
        5.88        31.20        10.75        13.81         1.22        41.33 
TCGA-91-6847 TCGA-91-6848 TCGA-95-7039 TCGA-95-7567 
       26.93         4.18         1.12         5.36 

$subtype4
TCGA-05-4384 TCGA-05-4396 TCGA-05-4426 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       14.01         9.96        26.01         2.96         0.99         0.46 
TCGA-38-4626 TCGA-44-3396 TCGA-44-3398 TCGA-44-6146 TCGA-44-7659 TCGA-44-7661 
       85.32        10.22         8.32         9.93         9.80         5.03 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4494 TCGA-49-4510 TCGA-49-6742 
       17.59        13.74        76.21        35.54        29.46        15.02 
TCGA-49-6744 TCGA-50-5051 TCGA-50-5932 TCGA-53-7626 TCGA-55-6543 TCGA-55-7574 
       12.99        14.96        35.87        31.89         0.07         3.12 
TCGA-55-7728 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-73-4658 TCGA-73-4659 
        0.79         6.12        22.68        13.61        52.57        23.38 
TCGA-73-4670 TCGA-73-4675 TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7156 
        0.46         1.32        20.58        35.93        24.99        32.09 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 
        7.04       104.15       223.96        88.11        53.33        28.96 
TCGA-78-7633 TCGA-86-7713 TCGA-91-6849 TCGA-93-7348 TCGA-97-7546 TCGA-97-7552 
       32.68         0.23         0.92         4.18        31.66        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 
       43.76         8.65         0.59 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.03     0.69     0.07 
subtype1 subtype2 subtype3 subtype4 
   63.72    83.84   163.10   223.96 
subtype1 subtype2 subtype3 subtype4 
   7.085    8.895   13.480   14.960 
[1] "0.0 - 63.7 (7.1)"   "0.0 - 83.8 (8.9)"   "0.7 - 163.1 (13.5)"
[4] "0.1 - 224.0 (15.0)"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[163] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[169] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[175] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[199] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[205] "subtype4" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[163] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[169] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[175] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[199] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[205] "subtype4" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[163] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[169] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[175] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[199] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[205] "subtype4" "subtype1" "subtype1"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 14  8
  subtype2 36 36
  subtype3 51 31
  subtype4 25 28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14    8
  subtype2   36   36
  subtype3   51   31
  subtype4   25   28
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       14       36       51       25
  MALE          8       36       31       28
D6V4, continuous
D6V5, multiclass
D6V6, multiclass
D6V7, multiclass
D6V8, multiclass
D6V9, multiclass
D6V10, binary
          cls
clus        0  1
  subtype1  0 22
  subtype2  7 65
  subtype3  6 76
  subtype4  2 51
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   22
  subtype2    7   65
  subtype3    6   76
  subtype4    2   51
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        7        6        2
  YES       22       65       76       51
D6V11, binary
          cls
clus        0  1
  subtype1  5 17
  subtype2  9 63
  subtype3 14 68
  subtype4  9 44
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   17
  subtype2    9   63
  subtype3   14   68
  subtype4    9   44
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        9       14        9
  YES       17       63       68       44

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 51 23
  subtype2 41 12
  subtype3 20 20
  subtype4 40 17
  subtype5 21  7
subtype1 subtype2 subtype3 subtype4 subtype5 
      74       53       40       57       28 
subtype1 subtype2 subtype3 subtype4 subtype5 
      23       12       20       17        7 
$subtype1
TCGA-05-4382 TCGA-05-4398 TCGA-05-4405 TCGA-05-4426 TCGA-05-4427 TCGA-35-4122 
       19.92        47.05        20.05        26.01        26.01         7.36 
TCGA-35-4123 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
        5.95        49.02        28.37        44.61         5.19        19.10 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-6775 TCGA-44-6777 TCGA-44-7661 TCGA-44-7662 
        6.21         4.60         2.70        32.45         5.03         1.64 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 
       28.57        12.66        35.54        14.07        29.75         4.93 
TCGA-49-6761 TCGA-50-5049 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 TCGA-50-6590 
        0.03        48.82         9.76        77.88         9.37        42.31 
TCGA-50-6594 TCGA-50-6595 TCGA-55-1595 TCGA-55-6712 TCGA-55-6978 TCGA-55-6979 
       12.16         6.21        48.62         0.79         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-7281 TCGA-55-7576 TCGA-55-7903 
        2.20        45.34        32.71         0.59         1.32         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-64-1676 TCGA-64-1679 TCGA-64-5775 TCGA-64-5778 
        0.53         0.69        56.81        55.40         0.10        30.44 
TCGA-64-5815 TCGA-69-7760 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 
        7.33         5.06         4.24         2.01        52.57        20.28 
TCGA-73-4668 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 
       15.35         4.01       163.10        27.16         5.65        31.20 
TCGA-83-5908 TCGA-86-7711 TCGA-91-6836 TCGA-91-6848 TCGA-95-7039 TCGA-95-7567 
       13.81         0.89         0.36         4.18         1.12         5.36 
TCGA-97-7554 TCGA-97-7937 
        8.65         5.95 

$subtype2
TCGA-05-4249 TCGA-05-4384 TCGA-05-5423 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 
       38.07        14.01         4.96         2.04         0.46        85.32 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-6776 
       26.30        18.87        17.39         3.39         3.19        63.72 
TCGA-49-4486 TCGA-49-4501 TCGA-49-6744 TCGA-50-5932 TCGA-50-5935 TCGA-50-5942 
       76.21        46.72        12.99        35.87        21.47         4.44 
TCGA-50-5944 TCGA-50-6597 TCGA-53-7626 TCGA-55-6543 TCGA-55-6986 TCGA-55-7227 
       12.26        33.37        31.89         0.07        71.05         2.01 
TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7914 TCGA-67-3770 
        1.12         3.12         1.28         1.02         0.10         0.99 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7763 
        2.04         0.59         0.89         0.69        13.87        22.68 
TCGA-69-7764 TCGA-73-4662 TCGA-73-4677 TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 
       13.61        29.95         1.25        39.48        32.09         5.88 
TCGA-78-7162 TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 TCGA-91-6849 TCGA-93-7347 
      104.15        53.33        10.75        32.68         0.92         9.76 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7553 TCGA-97-7938 TCGA-99-7458 
       31.66        47.18        43.76         0.59         8.22 

$subtype3
TCGA-05-4250 TCGA-05-4415 TCGA-05-4418 TCGA-05-4433 TCGA-05-5420 TCGA-05-5425 
        3.98         2.96         8.98        24.00         1.02         2.96 
TCGA-05-5429 TCGA-38-4625 TCGA-44-5643 TCGA-44-6145 TCGA-44-6146 TCGA-44-6779 
        0.99        47.61         3.48         3.35         9.93        16.41 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5044 
       32.84         8.81        43.20        15.02        12.13        20.48 
TCGA-50-5072 TCGA-50-5936 TCGA-50-5939 TCGA-50-6592 TCGA-50-6673 TCGA-55-6970 
        8.05         8.45        15.12        25.51         0.72        15.25 
TCGA-55-6975 TCGA-55-6984 TCGA-55-6987 TCGA-55-7728 TCGA-64-5781 TCGA-69-7761 
        3.88        24.99        38.47         0.79        39.52         6.12 
TCGA-73-4670 TCGA-78-7148 TCGA-78-7150 TCGA-78-7154 TCGA-78-7160 TCGA-78-7166 
        0.46        20.58        21.86        19.50        22.29         8.48 
TCGA-78-7220 TCGA-78-7540 TCGA-78-7542 TCGA-91-6830 
       26.53        28.96        10.55         0.03 

$subtype4
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
       37.02         9.96        24.03        14.93        29.95        30.02 
TCGA-05-4432 TCGA-35-5375 TCGA-38-4630 TCGA-38-4631 TCGA-44-5644 TCGA-44-6774 
       25.02         8.68        35.28        11.64        16.37         5.42 
TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 TCGA-49-4487 TCGA-49-4510 
       36.49         5.33        18.31        18.87        28.11        29.46 
TCGA-50-5051 TCGA-50-5931 TCGA-50-5946 TCGA-50-6591 TCGA-50-7109 TCGA-53-7624 
       14.96         8.78        11.47         3.88         8.38        35.11 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 
       13.74        23.05        38.73        45.17         2.86        32.61 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-7815 TCGA-55-7910 
       42.48        40.70         0.92        48.49         1.78         6.48 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-67-3771 TCGA-73-4659 
       20.65        39.09        83.84        16.67         1.97        23.38 
TCGA-78-7149 TCGA-78-7153 TCGA-78-7155 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 
       35.93        24.99        38.50        40.11         7.04        88.11 
TCGA-78-7536 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        8.02         0.36         0.23         1.22        41.33         1.28 
TCGA-91-6847 TCGA-91-7771 TCGA-95-7043 
       26.93         1.02         0.07 

$subtype5
TCGA-05-4402 TCGA-05-4430 TCGA-05-4434 TCGA-38-4627 TCGA-44-2657 TCGA-44-5645 
        8.02        25.02        15.02        37.71        13.15         6.84 
TCGA-44-6147 TCGA-44-6148 TCGA-44-7659 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        7.76         3.12         9.80        17.46        17.59        13.74 
TCGA-50-5055 TCGA-50-5068 TCGA-50-6593 TCGA-55-6983 TCGA-55-6985 TCGA-55-7573 
       25.81        49.28        11.05        60.03        40.54         0.13 
TCGA-64-1680 TCGA-64-1681 TCGA-67-3772 TCGA-73-4675 TCGA-78-7147 TCGA-78-7163 
       37.02        44.38         0.59         1.32        19.27       223.96 
TCGA-91-6835 TCGA-93-7348 TCGA-97-7552 TCGA-97-7941 
        1.15         4.18        48.53         0.72 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.03     0.07     0.03     0.07     0.13 
subtype1 subtype2 subtype3 subtype4 subtype5 
  163.10   104.15    47.61    88.11   223.96 
subtype1 subtype2 subtype3 subtype4 subtype5 
    9.01    12.99    11.34    18.87    14.38 
[1] "0.0 - 163.1 (9.0)"  "0.1 - 104.2 (13.0)" "0.0 - 47.6 (11.3)" 
[4] "0.1 - 88.1 (18.9)"  "0.1 - 224.0 (14.4)"
  [1] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
  [7] "subtype4" "subtype1" "subtype5" "subtype1" "subtype3" "subtype4"
 [13] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype3" "subtype5" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [31] "subtype3" "subtype2" "subtype5" "subtype1" "subtype1" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype5" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype4" "subtype5" "subtype3" "subtype3" "subtype5"
 [61] "subtype5" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype1" "subtype4"
 [73] "subtype4" "subtype5" "subtype5" "subtype5" "subtype2" "subtype4"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype4" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
 [97] "subtype5" "subtype1" "subtype5" "subtype3" "subtype4" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype4" "subtype1" "subtype4" "subtype3" "subtype5"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
[121] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype5" "subtype3" "subtype5"
[145] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype5"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[157] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype1"
[163] "subtype4" "subtype4" "subtype1" "subtype5" "subtype5" "subtype4"
[169] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype2"
[175] "subtype4" "subtype5" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[193] "subtype3" "subtype5" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype1" "subtype5" "subtype3" "subtype4" "subtype3" "subtype2"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype4"
[211] "subtype3" "subtype4" "subtype2" "subtype5" "subtype3" "subtype4"
[217] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[223] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype4" "subtype3" "subtype4" "subtype5" "subtype1"
[235] "subtype4" "subtype1" "subtype2" "subtype4" "subtype2" "subtype5"
[241] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype5"
[247] "subtype2" "subtype1" "subtype1" "subtype2" "subtype5" "subtype2"
  [1] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
  [7] "subtype4" "subtype1" "subtype5" "subtype1" "subtype3" "subtype4"
 [13] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype3" "subtype5" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [31] "subtype3" "subtype2" "subtype5" "subtype1" "subtype1" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype5" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype4" "subtype5" "subtype3" "subtype3" "subtype5"
 [61] "subtype5" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype1" "subtype4"
 [73] "subtype4" "subtype5" "subtype5" "subtype5" "subtype2" "subtype4"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype4" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
 [97] "subtype5" "subtype1" "subtype5" "subtype3" "subtype4" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype4" "subtype1" "subtype4" "subtype3" "subtype5"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
[121] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype5" "subtype3" "subtype5"
[145] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype5"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[157] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype1"
[163] "subtype4" "subtype4" "subtype1" "subtype5" "subtype5" "subtype4"
[169] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype2"
[175] "subtype4" "subtype5" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[193] "subtype3" "subtype5" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype1" "subtype5" "subtype3" "subtype4" "subtype3" "subtype2"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype4"
[211] "subtype3" "subtype4" "subtype2" "subtype5" "subtype3" "subtype4"
[217] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[223] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype4" "subtype3" "subtype4" "subtype5" "subtype1"
[235] "subtype4" "subtype1" "subtype2" "subtype4" "subtype2" "subtype5"
[241] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype5"
[247] "subtype2" "subtype1" "subtype1" "subtype2" "subtype5" "subtype2"
  [1] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
  [7] "subtype4" "subtype1" "subtype5" "subtype1" "subtype3" "subtype4"
 [13] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype3" "subtype5" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [31] "subtype3" "subtype2" "subtype5" "subtype1" "subtype1" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype5" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype4" "subtype5" "subtype3" "subtype3" "subtype5"
 [61] "subtype5" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype1" "subtype4"
 [73] "subtype4" "subtype5" "subtype5" "subtype5" "subtype2" "subtype4"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype4" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
 [97] "subtype5" "subtype1" "subtype5" "subtype3" "subtype4" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype4" "subtype1" "subtype4" "subtype3" "subtype5"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
[121] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype5" "subtype3" "subtype5"
[145] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype5"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[157] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype1"
[163] "subtype4" "subtype4" "subtype1" "subtype5" "subtype5" "subtype4"
[169] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype2"
[175] "subtype4" "subtype5" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[193] "subtype3" "subtype5" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype1" "subtype5" "subtype3" "subtype4" "subtype3" "subtype2"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype4"
[211] "subtype3" "subtype4" "subtype2" "subtype5" "subtype3" "subtype4"
[217] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[223] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype4" "subtype3" "subtype4" "subtype5" "subtype1"
[235] "subtype4" "subtype1" "subtype2" "subtype4" "subtype2" "subtype5"
[241] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype5"
[247] "subtype2" "subtype1" "subtype1" "subtype2" "subtype5" "subtype2"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 44 39
  subtype2 40 20
  subtype3 21 24
  subtype4 29 37
  subtype5 21 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   44   39
  subtype2   40   20
  subtype3   21   24
  subtype4   29   37
  subtype5   21   11
D7V4, continuous
D7V5, multiclass
D7V6, multiclass
D7V7, multiclass
D7V8, multiclass
D7V9, multiclass
D7V10, binary
          cls
clus        0  1
  subtype1  6 77
  subtype2  4 56
  subtype3  4 41
  subtype4  2 64
  subtype5  1 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   77
  subtype2    4   56
  subtype3    4   41
  subtype4    2   64
  subtype5    1   31
D7V11, binary
          cls
clus        0  1
  subtype1 19 64
  subtype2 11 49
  subtype3  8 37
  subtype4  3 63
  subtype5  3 29
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   64
  subtype2   11   49
  subtype3    8   37
  subtype4    3   63
  subtype5    3   29

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 79 28
  subtype2 49 28
  subtype3 45 23
subtype1 subtype2 subtype3 
     107       77       68 
subtype1 subtype2 subtype3 
      28       28       23 
$subtype1
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 
       38.07        14.01         9.96        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 
       15.02         4.96         0.99         2.04         0.46        85.32 
TCGA-38-4627 TCGA-38-4632 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       37.71        44.61        26.30        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-3919 TCGA-44-5645 TCGA-44-6146 
        3.39        13.15         3.19         6.21         6.84         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6776 TCGA-44-7659 TCGA-44-7670 TCGA-44-7671 
        7.76         3.12        63.72         9.80        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4501 TCGA-49-4510 
       13.74        76.21        28.11        28.57        46.72        29.46 
TCGA-49-4512 TCGA-49-6744 TCGA-50-5049 TCGA-50-5055 TCGA-50-5068 TCGA-50-5932 
       29.75        12.99        48.82        25.81        49.28        35.87 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6673 TCGA-53-7626 TCGA-55-6543 
        4.44        12.26        11.05         0.72        31.89         0.07 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        0.92        48.49        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       71.05        38.47         2.01         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7907 TCGA-55-7914 TCGA-64-1680 
        3.12         1.28         0.79         0.53         0.10        37.02 
TCGA-64-1681 TCGA-64-5778 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       44.38        30.44         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-73-4662 TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7147 TCGA-78-7149 
       29.95         1.32         1.25       163.10        19.27        35.93 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7162 TCGA-78-7163 
       39.48        24.99        32.09         5.88       104.15       223.96 
TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-91-6830 TCGA-91-6835 
       88.11        53.33        28.96        32.68         0.03         1.15 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-97-7546 TCGA-97-7547 
        0.92         1.02         9.76         4.18        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       48.53        43.76         0.59         0.72         8.22 

$subtype2
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       19.92        37.02        24.03         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-5420 TCGA-05-5425 TCGA-35-5375 
       29.95        30.02        25.02         1.02         2.96         8.68 
TCGA-38-4630 TCGA-38-4631 TCGA-44-5643 TCGA-44-5644 TCGA-44-6145 TCGA-44-6774 
       35.28        11.64         3.48        16.37         3.35         5.42 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 TCGA-49-4506 
       36.49        16.41         5.33        18.31        18.87        32.84 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5051 TCGA-50-5072 
        8.81        43.20        15.02        12.13        14.96         8.05 
TCGA-50-5931 TCGA-50-5936 TCGA-50-5939 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        8.78         8.45        15.12        11.47         3.88        25.51 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
        8.38        35.11        13.74        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6975 
        2.86        32.61        42.48        40.70        15.25         3.88 
TCGA-55-7815 TCGA-55-7910 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
        1.78         6.48        39.09        83.84         0.10        16.67 
TCGA-64-5781 TCGA-67-3771 TCGA-73-4659 TCGA-73-4670 TCGA-78-7148 TCGA-78-7150 
       39.52         1.97        23.38         0.46        20.58        21.86 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7166 
       19.50        38.50        40.11        22.29         7.04         8.48 
TCGA-78-7220 TCGA-78-7536 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       26.53         8.02         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 TCGA-91-6848 TCGA-95-7043 
       41.33         1.28        26.93         4.18         0.07 

$subtype3
TCGA-05-4250 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4427 TCGA-35-4122 
        3.98        47.05         8.02        20.05        26.01         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-6178 TCGA-44-2656 
        5.95        47.61        49.02        28.37         5.19        19.10 
TCGA-44-2662 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 
       15.78         8.09        10.22         8.32         6.44         4.60 
TCGA-44-6775 TCGA-44-6777 TCGA-44-7661 TCGA-44-7662 TCGA-49-4490 TCGA-49-4494 
        2.70        32.45         5.03         1.64        12.66        35.54 
TCGA-49-4505 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5066 TCGA-50-5933 
       14.07         4.93         0.03        20.48         9.76        77.88 
TCGA-50-5935 TCGA-50-5941 TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       21.47         9.37        42.31        12.16         6.21        33.37 
TCGA-55-1595 TCGA-55-6712 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.62         0.79         5.46         7.76         2.20        45.34 
TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 TCGA-55-7911 TCGA-64-1676 TCGA-64-1677 
        1.32         1.02         0.62         0.69        56.81        20.65 
TCGA-64-1679 TCGA-64-5815 TCGA-69-7760 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
       55.40         7.33         5.06         4.24         2.01        52.57 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 
       20.28        15.35         4.01        27.16         5.65        31.20 
TCGA-78-7539 TCGA-78-7542 TCGA-83-5908 TCGA-91-6836 TCGA-95-7039 TCGA-95-7567 
       10.75        10.55        13.81         0.36         1.12         5.36 
TCGA-97-7554 TCGA-97-7937 
        8.65         5.95 

subtype1 subtype2 subtype3 
    0.03     0.07     0.03 
subtype1 subtype2 subtype3 
  223.96    83.84    77.88 
subtype1 subtype2 subtype3 
   14.01    15.02     9.01 
[1] "0.0 - 224.0 (14.0)" "0.1 - 83.8 (15.0)"  "0.0 - 77.9 (9.0)"  
  [1] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 74 48
  subtype2 35 52
  subtype3 46 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   74   48
  subtype2   35   52
  subtype3   46   31
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       74       35       46
  MALE         48       52       31
D8V4, continuous
D8V5, multiclass
D8V6, multiclass
D8V7, multiclass
D8V8, multiclass
D8V9, multiclass
D8V10, binary
          cls
clus         0   1
  subtype1   5 117
  subtype2   6  81
  subtype3   6  71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5  117
  subtype2    6   81
  subtype3    6   71
     clus
vv    subtype1 subtype2 subtype3
  NO         5        6        6
  YES      117       81       71
D8V11, binary
          cls
clus         0   1
  subtype1  17 105
  subtype2   9  78
  subtype3  18  59
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17  105
  subtype2    9   78
  subtype3   18   59
     clus
vv    subtype1 subtype2 subtype3
  NO        17        9       18
  YES      105       78       59

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 73 26
  subtype2 64 32
  subtype3 34 21
subtype1 subtype2 subtype3 
      99       96       55 
subtype1 subtype2 subtype3 
      26       32       21 
$subtype1
TCGA-05-4384 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-5429 TCGA-35-3615 
       14.01        26.01        26.01        24.00         0.99         0.46 
TCGA-38-4626 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2666 
       85.32        26.30        18.87        13.15         3.39         3.19 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        8.32         6.21         4.60         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6776 TCGA-44-6777 TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 
        7.76        63.72        32.45         9.80         5.03        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 
       13.74        76.21        28.11        12.66        14.07        29.46 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 
       12.99         4.93        71.47        14.96        25.81        49.28 
TCGA-50-5932 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-7109 
       35.87         8.45         9.37         4.44        12.26         8.38 
TCGA-53-7626 TCGA-55-6712 TCGA-55-6970 TCGA-55-6972 TCGA-55-6984 TCGA-55-6986 
       31.89         0.79        15.25        48.49        24.99        71.05 
TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7576 TCGA-55-7725 
        2.01         0.59         1.12         0.13         1.32         1.28 
TCGA-55-7727 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-64-1680 TCGA-64-1681 
        1.02         0.62         0.69         0.10        37.02        44.38 
TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       30.44         7.33         0.99         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4676 
       13.87         6.12        22.68        13.61         4.24         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 
      163.10        27.16        20.58        35.93        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 
       19.50        32.09         5.88        22.29       104.15         8.48 
TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-91-6835 TCGA-91-6849 
       88.11        53.33        28.96        32.68         1.15         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.02         9.76         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7938 TCGA-99-7458 
       43.76         0.59         8.22 

$subtype2
TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 
        8.02         2.96         8.98        29.95        30.02        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       25.02        15.02         1.02         4.96         2.96         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 
        7.36         5.95         8.68        47.61        49.02        35.28 
TCGA-38-4632 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2668 TCGA-44-3396 
       44.61        19.10        17.39        15.78         8.09        10.22 
TCGA-44-3918 TCGA-44-5643 TCGA-44-5644 TCGA-44-7660 TCGA-44-7670 TCGA-49-4488 
        6.44         3.48        16.37         5.33        17.46        28.57 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6743 
       35.54        46.72        32.84         8.81        43.20        12.13 
TCGA-50-5049 TCGA-50-5066 TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 TCGA-50-5946 
       48.82         9.76         9.27         8.78        21.47        11.47 
TCGA-50-6590 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 
       42.31        33.37         0.72        35.11        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6969 
       38.73        48.62        45.17         2.86        42.48        40.70 
TCGA-55-6971 TCGA-55-6979 TCGA-55-6981 TCGA-55-6987 TCGA-55-7728 TCGA-55-7815 
        0.92         7.76        45.34        38.47         0.79         1.78 
TCGA-55-7907 TCGA-55-7910 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 
        0.53         6.48        20.65        39.09        83.84         0.10 
TCGA-64-5779 TCGA-67-3771 TCGA-67-3773 TCGA-73-4659 TCGA-73-4662 TCGA-78-7146 
       16.67         1.97         2.04        23.38        29.95         5.65 
TCGA-78-7147 TCGA-78-7155 TCGA-78-7159 TCGA-78-7161 TCGA-78-7536 TCGA-78-7539 
       19.27        38.50        40.11         7.04         8.02        10.75 
TCGA-78-7542 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6830 
       10.55        13.81         0.89         0.23         1.22         0.03 
TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-95-7039 TCGA-95-7043 TCGA-97-7941 
        1.28         0.36        26.93         1.12         0.07         0.72 

$subtype3
TCGA-05-4249 TCGA-05-4405 TCGA-05-4417 TCGA-38-4627 TCGA-38-4629 TCGA-38-4631 
       38.07        20.05        14.93        37.71        28.37        11.64 
TCGA-38-6178 TCGA-44-2665 TCGA-44-6144 TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 
        5.19        13.15         0.30         5.42         2.70        36.49 
TCGA-44-6779 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-49-4512 TCGA-49-6742 
       16.41         1.64        18.31        18.87        29.75        15.02 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5072 TCGA-50-5933 TCGA-50-5939 TCGA-50-6591 
        0.03        20.48         8.05        77.88        15.12         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-55-6543 TCGA-55-6642 
       25.51        11.05        12.16         6.21         0.07        32.61 
TCGA-55-6978 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 TCGA-55-7574 
        5.46         2.20        32.71        60.03        40.54         3.12 
TCGA-55-7816 TCGA-64-1676 TCGA-64-1679 TCGA-64-5781 TCGA-67-3772 TCGA-69-7760 
        1.02        56.81        55.40        39.52         0.59         5.06 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4675 TCGA-78-7150 TCGA-78-7163 TCGA-78-7220 
        2.01        52.57         1.32        21.86       223.96        26.53 
TCGA-78-7535 TCGA-86-7701 TCGA-91-6829 TCGA-91-6848 TCGA-93-7348 TCGA-97-7554 
       31.20         0.36        41.33         4.18         4.18         8.65 
TCGA-97-7937 
        5.95 

subtype1 subtype2 subtype3 
    0.10     0.03     0.03 
subtype1 subtype2 subtype3 
  163.10    83.84   223.96 
subtype1 subtype2 subtype3 
  13.150   12.935   14.930 
[1] "0.1 - 163.1 (13.2)" "0.0 - 83.8 (12.9)"  "0.0 - 224.0 (14.9)"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype1"
D9V2, continuous
D9V3, binary
          cls
clus        0  1
  subtype1 61 50
  subtype2 59 54
  subtype3 34 26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   61   50
  subtype2   59   54
  subtype3   34   26
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       61       59       34
  MALE         50       54       26
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
D9V7, multiclass
D9V8, multiclass
D9V9, multiclass
D9V10, binary
          cls
clus         0   1
  subtype1   8 103
  subtype2   7 106
  subtype3   3  57
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8  103
  subtype2    7  106
  subtype3    3   57
     clus
vv    subtype1 subtype2 subtype3
  NO         8        7        3
  YES      103      106       57
D9V11, binary
          cls
clus         0   1
  subtype1  18  93
  subtype2  12 101
  subtype3  11  49
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18   93
  subtype2   12  101
  subtype3   11   49
     clus
vv    subtype1 subtype2 subtype3
  NO        18       12       11
  YES       93      101       49

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 69 40
  subtype2 10  3
  subtype3 92 36
subtype1 subtype2 subtype3 
     109       13      128 
subtype1 subtype2 subtype3 
      40        3       36 
$subtype1
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 
       19.92        37.02        24.03        47.05         8.02         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 
       14.93         8.98        29.95        30.02        26.01        25.02 
TCGA-05-4432 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 TCGA-35-4123 
       25.02         1.02         4.96         2.96         2.04         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
        8.68        47.61        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-44-2662 TCGA-44-2668 TCGA-44-3396 TCGA-44-5643 TCGA-44-5644 
       44.61        15.78         8.09        10.22         3.48        16.37 
TCGA-44-6144 TCGA-44-6778 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        0.30        36.49         5.33         1.64        18.31        18.87 
TCGA-44-7670 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       17.46        28.57        12.66        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6761 TCGA-50-5049 
        8.81        43.20        15.02        12.13         0.03        48.82 
TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 
        9.76         8.05         9.27         8.78        77.88        21.47 
TCGA-50-5939 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 TCGA-50-6673 
       15.12        11.47        42.31        25.51        12.16         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
        8.38        35.11        13.74        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6978 
        2.86        32.61        42.48        40.70         0.92         5.46 
TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6987 TCGA-55-7910 TCGA-64-1676 
        7.76        45.34        32.71        38.47         6.48        56.81 
TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 
       55.40        83.84         0.10        16.67        39.52         1.97 
TCGA-67-3772 TCGA-69-7760 TCGA-73-4659 TCGA-78-7146 TCGA-78-7150 TCGA-78-7155 
        0.59         5.06        23.38         5.65        21.86        38.50 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7220 TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 
       40.11         7.04        26.53         8.02        10.75        10.55 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-95-7039 
        0.03         1.28         0.36        26.93         4.18         1.12 
TCGA-95-7043 
        0.07 

$subtype2
TCGA-05-4249 TCGA-38-4627 TCGA-38-6178 TCGA-44-2665 TCGA-44-6774 TCGA-50-6591 
       38.07        37.71         5.19        13.15         5.42         3.88 
TCGA-50-6595 TCGA-55-6543 TCGA-55-6980 TCGA-55-7907 TCGA-78-7163 TCGA-93-7348 
        6.21         0.07         2.20         0.53       223.96         4.18 
TCGA-97-7554 
        8.65 

$subtype3
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4405 TCGA-05-4426 TCGA-05-4433 
        3.98        14.01         9.96        20.05        26.01        24.00 
TCGA-05-4434 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 TCGA-38-7271 
       15.02         0.99         0.46         7.36        85.32        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 
       18.87        19.10        13.15        17.39         3.39         3.19 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 
        8.32         6.44         6.21         4.60         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        9.93         7.76         2.70        63.72        32.45        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        9.80         5.03        17.59        13.74        76.21        28.11 
TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       14.07        29.46        29.75        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5932 TCGA-50-5936 
       71.47        14.96        25.81        49.28        35.87         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6597 TCGA-53-7626 
        9.37         4.44        12.26        11.05        33.37        31.89 
TCGA-55-1595 TCGA-55-6712 TCGA-55-6970 TCGA-55-6972 TCGA-55-6983 TCGA-55-6984 
       48.62         0.79        15.25        48.49        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05         2.01         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7816 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 
        1.02         0.62         0.69         0.10        20.65        39.09 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3773 
       37.02        44.38        30.44         7.33         0.99         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69        13.87         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4675 
       13.61         4.24         2.01        52.57        29.95         1.32 
TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        4.01       163.10        27.16        19.27        20.58        35.93 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 
       39.48        24.99        19.50        32.09         5.88        22.29 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7540 
      104.15         8.48        88.11        31.20        53.33        28.96 
TCGA-78-7633 TCGA-91-6835 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-95-7567 
       32.68         1.15         0.92         1.02         9.76         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 
       31.66        47.18        48.53        43.76         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

subtype1 subtype2 subtype3 
    0.03     0.07     0.10 
subtype1 subtype2 subtype3 
   83.84   223.96   163.10 
subtype1 subtype2 subtype3 
  14.930    5.420   13.675 
[1] "0.0 - 83.8 (14.9)"  "0.1 - 224.0 (5.4)"  "0.1 - 163.1 (13.7)"
  [1] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype3"
D10V2, continuous
D10V3, binary
          cls
clus        0  1
  subtype1 60 66
  subtype2 11  4
  subtype3 83 60
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   60   66
  subtype2   11    4
  subtype3   83   60
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       60       11       83
  MALE         66        4       60
D10V4, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype1 subtype2 subtype3 
       9        1       14 
 [1] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[19] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
D10V5, multiclass
D10V6, multiclass
D10V7, multiclass
D10V8, multiclass
D10V9, multiclass
D10V10, binary
          cls
clus         0   1
  subtype1   9 117
  subtype2   0  15
  subtype3   9 134
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9  117
  subtype2    0   15
  subtype3    9  134
     clus
vv    subtype1 subtype2 subtype3
  NO         9        0        9
  YES      117       15      134
D10V11, binary
          cls
clus         0   1
  subtype1  13 113
  subtype2   4  11
  subtype3  24 119
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13  113
  subtype2    4   11
  subtype3   24  119
     clus
vv    subtype1 subtype2 subtype3
  NO        13        4       24
  YES      113       11      119
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
