
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227496/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC/1971863/1.GDAC_clinicalDataPicker.Finished/LUSC.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=LUSC"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=309, in cluster file=343, common to both=307
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 307
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               20               287 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               20               287 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               64               243 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               64               243 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               73               234 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               73               234 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               32               275 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               32               275 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               33               274 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               33               274 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              136               171 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              136               171 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               11               296 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               11               296 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                5               302 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                5               302 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              141               166 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              141               166 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               32               275 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               32               275 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               29               278 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               29               278 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16               291 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16               291 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               84               223 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               84               223 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               81               226 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               81               226 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               43               264 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               43               264 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               85               222 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               85               222 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               19               288 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               19               288 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               279 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               279 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                15                292 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                15                292 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                301 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                301 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                290 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                290 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                20                287 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                20                287 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                85                222 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                85                222 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                38                269 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                38                269 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                301 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                301 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                31                276 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                31                276 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                27                280 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                27                280 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                14                293 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                14                293 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                18                289 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                18                289 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 7                300 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 7                300 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                33                274 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                33                274 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                50                257 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                50                257 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                36                271 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                36                271 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                31                276 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                31                276 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                45                262 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                45                262 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                86                221 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                86                221 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                74                233 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                74                233 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                289 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                289 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                72                235 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                72                235 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9               298 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9               298 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               46               261 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               46               261 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9               298 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9               298 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               299 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               299 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              136               171 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              136               171 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               27               280 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               27               280 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              130               177 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              130               177 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              112               195 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              112               195 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               19               288 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               19               288 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              112               195 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              112               195 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               33               274 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               33               274 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               35               272 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               35               272 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               19               288 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               19               288 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               11               296 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               11               296 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               93               214 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               93               214 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9               298 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9               298 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              125               182 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              125               182 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               78               229 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               78               229 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                66                241 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                66                241 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                66                241 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                66                241 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                47                260 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                47                260 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                30                277 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                30                277 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                302 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                302 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                303 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                303 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               116                191 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               116                191 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                54                253 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                54                253 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                36                271 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                36                271 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                45                262 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                45                262 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                57                250 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                57                250 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               111                196 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               111                196 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                19                288 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                19                288 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                30                277 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                30                277 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                60                247 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                60                247 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                50                257 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                50                257 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                33                274 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                33                274 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                15                292 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                15                292 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                16                291 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                16                291 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                97                210 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                97                210 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                32                275 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                32                275 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               12               295 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               12               295 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NEOADJUVANTTHERAPY"                    
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 307 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3516         1426         3016         2133         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         473          964         3724          283         3644          267 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
         962           NA          908          656          329          608 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
         223          454          131         1953           53          429 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
         822         1485          622         1067         1470          734 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
          17         1161         1057          399           NA          587 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
          NA          358          964         1974         1932          444 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
        1345           24         1651         2170           NA          357 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         573          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
         428           NA          334           NA          821           80 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        1874          958          881          999          950         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        1575          994           NA          329          235          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
         698          168           NA           NA          120           13 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
          12          199          246          227          238          207 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
          12          103         1454         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
         832         1107          474         1084           24          544 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
         556          550          399          352          573          258 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
         549          213          183           85           NA           NA 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3765 
         212           48         2023          202          193           NA 
TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 TCGA-46-6025 TCGA-46-6026 
          NA           NA           NA           NA           29           18 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
          12           12           63          541          178           NA 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
          NA          880            3           NA           62           31 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
          30           13           30           44           40           26 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
         473          109           NA          311           NA           NA 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        2500          660         2082         1505         1685          888 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
         274         1456          512         1075         1181          931 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
          96          793          733          693           37          719 
TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 TCGA-63-6202 TCGA-63-7020 TCGA-63-7021 
         358           NA           NA           NA           NA           NA 
TCGA-63-7022 TCGA-63-7023 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
          NA           NA          516         1311           61          641 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
          30           31           61           28           30           30 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
         638          761           30           61           31           61 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
          61          215          700          578           92           61 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
         578          366          121          365          759           59 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
         790         1217          699          123          699          153 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
         913          306         1645          122         1492           83 
TCGA-68-7756 TCGA-70-6722 TCGA-70-6723 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
         202           NA           NA           NA           NA           NA 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
          NA           NA         2736           NA           15         1285 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
          NA           NA           NA           NA          479           NA 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
        2522           NA           NA           NA           NA         3166 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
          NA           NA          833           NA          293           NA 
TCGA-77-8154 TCGA-77-8156 TCGA-79-5596 TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
        1092           10           NA           NA           11           24 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7710 
          34           18           10           49            1           NA 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
          35           38           26           60           16           43 
TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
          14           36           41           47           89           18 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
          82          106          122          160           69           87 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
          NA         1213         1777          115          413          223 
TCGA-98-8023 
         308 
Variable 1:'AGE':	nDistinctValues=43,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=116,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=214,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=155,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
156  81  62   4 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 307 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=43, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 70 187  32  18 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 70 187  32  18 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 70 187  32  18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 70 187  32  18 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
191  84  26   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
191  84  26   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
191  84  26   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
191  84  26   5 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
156  81  62   4 
[1] "table(vv)"
vv
  I  II III  IV 
156  81  62   4 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
156  81  62   4 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
156  81  62   4 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    14   6
  1P GAIN WILD-TYPE 158 112
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               20               270 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                6               112 
$`1P GAIN MUTATED`
TCGA-18-3414 TCGA-21-1081 TCGA-22-1016 TCGA-22-5481 TCGA-33-4533 TCGA-34-5240 
       13.02         9.30        27.02        79.20       114.05         7.73 
TCGA-43-2576 TCGA-43-3920 TCGA-43-6143 TCGA-52-7809 TCGA-56-7223 TCGA-60-2695 
       18.28        18.84         7.00         5.85         0.99        15.55 
TCGA-60-2722 TCGA-60-2723 TCGA-66-2763 TCGA-77-7140 TCGA-77-7141 TCGA-77-7338 
       24.10        22.78         0.99        20.78         0.49         0.16 
TCGA-85-8049 TCGA-85-8072 
        1.97         1.18 

$`1P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 
        4.31        64.21         1.74        14.10        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       71.34        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       16.60        82.98        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       50.24        51.78        32.68         9.04        10.82        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       18.08        13.12        11.57         8.48        18.05         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39         2.07        17.79         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        1.32         0.85         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       30.61         3.16        26.07         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 
        4.01        49.05         2.73         6.64        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7142 TCGA-77-7335 
       75.09        23.28        11.18        89.95        42.25        70.09 
TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
      106.95        46.78        15.75        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 
        0.03         1.15         1.25         0.85         0.53         1.41 
TCGA-85-8071 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        0.46         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.16              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           114.05            173.79 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            11.16             15.24 
[1] "0.2 - 114.0 (11.2)" "0.0 - 173.8 (15.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      8   12
  1P GAIN WILD-TYPE   72  215
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               8                72
  MALE                12               215
D1V4, continuous
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                50 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5787        TCGA-22-1017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5483        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-60-2696        TCGA-60-2698        TCGA-60-2712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2725        TCGA-60-2726        TCGA-70-6722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-70-6723        TCGA-85-7843        TCGA-85-7844        TCGA-92-7340 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-7341        TCGA-98-7454 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
D1V5, multiclass
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1               1                69
  T2              17               170
  T3               1                31
  T4               1                17
D1V7, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0              12               179
  N1               7                77
  N2               1                25
  N3               0                 5
D1V8, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              18               253
  M1               1                 3
  MX               1                25
D1V9, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  I                12               144
  II                5                76
  III               2                60
  IV                1                 3
D1V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      1   19
  1P GAIN WILD-TYPE   10  277
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                1                10
  YES              19               277
D1V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      3   17
  1P GAIN WILD-TYPE   26  261
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                3                26
  YES              17               261

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    38  25
  1Q GAIN WILD-TYPE 134  93
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               63               227 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               25                93 
$`1Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3414 TCGA-18-3417 TCGA-18-5592 TCGA-21-1072 
       81.07        46.52        13.02        24.92         3.02        99.16 
TCGA-21-1077 TCGA-21-1081 TCGA-21-5784 TCGA-22-1016 TCGA-22-4599 TCGA-22-4607 
       34.78         9.30        29.85        27.02        38.17        19.30 
TCGA-22-5474 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-33-4533 
       14.60        71.34        79.20        30.08        62.86       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 TCGA-34-2600 
       97.94       173.79        14.07        54.44         2.63        61.61 
TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 TCGA-37-3783 TCGA-37-4133 
       50.24        10.82         7.73         5.52         3.95         7.82 
TCGA-39-5037 TCGA-43-2576 TCGA-43-3920 TCGA-43-6143 TCGA-51-4080 TCGA-52-7809 
        0.79        18.28        18.84         7.00         0.39         5.85 
TCGA-56-7223 TCGA-56-7582 TCGA-60-2695 TCGA-60-2722 TCGA-60-2723 TCGA-66-2737 
        0.99         0.85        15.55        24.10        22.78         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2763 TCGA-66-2770 TCGA-66-2777 TCGA-66-2785 
        0.92         0.99         0.99        23.01         2.01         1.94 
TCGA-77-6843 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7338 
       73.08        23.28        89.95        20.78         0.49         0.16 
TCGA-77-7463 TCGA-77-8145 TCGA-77-8148 TCGA-85-7696 TCGA-85-8049 TCGA-85-8052 
       46.78         6.97         9.63         0.59         1.97         0.53 
TCGA-85-8072 TCGA-90-7767 TCGA-94-7557 
        1.18         2.93         0.16 

$`1Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        79.46         4.80        11.34        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 
       27.16       115.59        46.88        70.13        60.89        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33        24.13         0.56        34.75        13.12        32.02 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 
        9.53        11.77        31.69        64.90        63.52        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 TCGA-22-5491 TCGA-22-5492 
        0.79        54.28        11.74        18.84        56.32        16.60 
TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4589 TCGA-33-6737 
       82.98        43.10       103.53       141.34        10.98        19.76 
TCGA-33-6738 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       26.99        31.50        28.96        32.84        31.23        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       32.68         9.04        14.07        22.95         4.96         1.08 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 
        0.43         0.39         6.54         8.09         7.46         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 
       27.35        36.39        15.58        35.64        17.88        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       13.12        11.57         8.48        18.05         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        6.35         9.96         0.95         0.59         0.39         2.07 
TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       17.79         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-60-2696 
        1.02         0.99         0.43         1.45         1.32         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         1.02         2.01         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
        2.01         1.02         2.01         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 TCGA-77-7142 TCGA-77-7335 
        6.64        29.56        75.09        11.18        42.25        70.09 
TCGA-77-7337 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
      106.95        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8070 TCGA-85-8071 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-92-7340 
        1.41         0.46         1.35         1.55         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        3.48         4.01         5.26         2.27         2.86        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78        13.58         7.33        10.13 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.16              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           173.79            141.34 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            14.07             15.55 
[1] "0.2 - 173.8 (14.1)" "0.0 - 141.3 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     17   47
  1Q GAIN WILD-TYPE   63  180
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              17                63
  MALE                47               180
D2V4, continuous
D2V5, multiclass
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1               9                61
  T2              43               144
  T3               6                26
  T4               6                12
D2V7, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0              39               152
  N1              20                64
  N2               5                21
  N3               0                 5
D2V8, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              58               213
  M1               2                 2
  MX               3                23
D2V9, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  I                33               123
  II               16                65
  III              13                49
  IV                2                 2
D2V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      2   62
  1Q GAIN WILD-TYPE    9  234
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                2                 9
  YES              62               234
D2V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      4   60
  1Q GAIN WILD-TYPE   25  218
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                4                25
  YES              60               218

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    43  26
  2P GAIN WILD-TYPE 129  92
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               69               221 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               26                92 
$`2P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-21-1072 
       11.34        13.02        59.51        24.92         1.61        99.16 
TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 
       31.69         9.30        88.08        20.45        24.13        38.17 
TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 TCGA-22-5478 TCGA-22-5480 TCGA-22-5483 
       13.12        31.69        63.52         0.79        71.34        18.84 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4566 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       62.86        82.98       173.79        26.99         2.63        31.50 
TCGA-34-5231 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-4130 TCGA-37-4133 
       50.24         7.73         5.52         1.08         8.09         7.82 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-3394 
       74.07        44.71        35.64         0.79        18.28        11.57 
TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 
       18.05         7.00        66.51         6.64         9.96         0.95 
TCGA-51-4080 TCGA-52-7809 TCGA-56-7579 TCGA-56-7582 TCGA-60-2711 TCGA-60-2723 
        0.39         5.85         1.45         0.85        29.19        22.78 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 
       19.00         2.01         4.04        30.02        10.06         4.01 
TCGA-68-7755 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 
        2.73        29.56        23.28        11.18        89.95         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-8148 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 
       42.25        70.09         9.63         0.36         1.12         0.59 
TCGA-85-8052 TCGA-85-8072 TCGA-90-7769 
        0.53         1.18         0.59 

$`2P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3416 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34        43.76         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       27.16       115.59        46.88        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
       15.55       122.43       119.80         8.78        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       48.33         0.56        34.75        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5481 
       11.77        64.90        14.60        44.22        54.28        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 
       11.74        30.08        56.32        16.60       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       19.76        61.61        28.96        32.84        31.23        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       32.68         9.04        10.82        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 
        3.95         0.43         0.39         6.54         7.46         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        47.80        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       15.58        17.88        18.08        13.12        18.84         8.48 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-8116 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 
        6.35         0.59         0.39         2.07        17.79         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.43         0.99         1.32        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        55.40         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       38.83        30.61         3.16        26.07        24.10         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01         7.07        23.01         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2800 TCGA-68-7756 
       22.98        22.98         5.03        54.08        49.05         6.64 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       73.08        75.09        20.78       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       15.75        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 
       54.41        35.90         0.33         0.79         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8070 
        0.03         1.15         1.25         0.85         1.97         1.41 
TCGA-85-8071 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 
        0.46         1.35         1.55         2.93         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.27         2.86         0.16        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78        13.58         7.33        10.13 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.36              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           173.79            141.34 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            13.02             15.55 
[1] "0.4 - 173.8 (13.0)" "0.0 - 141.3 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     13   60
  2P GAIN WILD-TYPE   67  167
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              13                67
  MALE                60               167
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1              13                57
  T2              42               145
  T3              11                21
  T4               7                11
D3V7, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0              39               152
  N1              28                56
  N2               5                21
  N3               1                 4
D3V8, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0              66               205
  M1               2                 2
  MX               3                23
D3V9, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  I                30               126
  II               24                57
  III              17                45
  IV                2                 2
D3V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      5   68
  2P GAIN WILD-TYPE    6  228
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                5                 6
  YES              68               228
D3V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     10   63
  2P GAIN WILD-TYPE   19  215
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO               10                19
  YES              63               215

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    19  11
  2Q GAIN WILD-TYPE 153 107
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               260 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               11               107 
$`2Q GAIN MUTATED`
TCGA-18-3414 TCGA-21-1072 TCGA-21-1081 TCGA-22-4595 TCGA-22-5480 TCGA-22-5483 
       13.02        99.16         9.30        24.13        71.34        18.84 
TCGA-33-4566 TCGA-34-2596 TCGA-34-2604 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 
      173.79         2.63        31.50         7.73         5.52         1.08 
TCGA-37-4133 TCGA-39-5016 TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-3394 
        7.82        74.07        35.64         0.79        18.28        11.57 
TCGA-43-5670 TCGA-43-6143 TCGA-52-7809 TCGA-56-7582 TCGA-60-2711 TCGA-60-2723 
       18.05         7.00         5.85         0.85        29.19        22.78 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7139 TCGA-77-7142 TCGA-77-8130 TCGA-90-7769 
       29.56        23.28        89.95        42.25        82.92         0.59 

$`2Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       35.08        48.33         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 
       63.52        14.60        44.22         0.79        54.28        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 
       54.44        10.98        19.76        26.99        61.61        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       10.82        14.07        22.95         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         8.09         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        47.80        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       15.58        17.88        18.08        13.12        18.84         8.48 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 
        0.39         0.39         2.07        17.79         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.99         1.45         1.32        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        55.40         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       38.83        30.61         3.16        26.07        24.10         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
        6.64        73.08        75.09        11.18        20.78         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       70.09       106.95         0.16        46.78        15.75        37.81 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        2.93         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.59              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           173.79            141.34 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           18.560            14.085 
[1] "0.6 - 173.8 (18.6)" "0.0 - 141.3 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      8   24
  2Q GAIN WILD-TYPE   72  203
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               8                72
  MALE                24               203
D4V4, continuous
D4V5, multiclass
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               3                67
  T2              24               163
  T3               3                29
  T4               2                16
D4V7, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0              18               173
  N1              12                72
  N2               2                24
  N3               0                 5
D4V8, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              29               242
  M1               1                 3
  MX               1                25
D4V9, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  I                12               144
  II               16                65
  III               3                59
  IV                1                 3
D4V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      3   29
  2Q GAIN WILD-TYPE    8  267
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                3                 8
  YES              29               267
D4V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      4   28
  2Q GAIN WILD-TYPE   25  250
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                4                25
  YES              28               250

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    15  17
  3P GAIN WILD-TYPE 157 101
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               32               258 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               17               101 
$`3P GAIN MUTATED`
TCGA-18-3414 TCGA-21-1081 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-5477 
       13.02         9.30        35.08        24.13        34.75        44.22 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4582 TCGA-33-4586 TCGA-34-5240 
       30.08        62.86        56.32       103.53        14.07         7.73 
TCGA-37-4133 TCGA-39-5019 TCGA-39-5021 TCGA-39-5029 TCGA-39-5037 TCGA-43-3394 
        7.82        44.71        68.58        24.33         0.79        11.57 
TCGA-43-5670 TCGA-46-6025 TCGA-56-7223 TCGA-60-2706 TCGA-60-2713 TCGA-60-2715 
       18.05         0.95         0.99        82.19        47.87        35.34 
TCGA-66-2727 TCGA-66-2756 TCGA-66-2773 TCGA-66-2777 TCGA-77-7140 TCGA-85-6561 
       16.96         0.99         3.02         2.01        20.78         0.79 
TCGA-85-6798 TCGA-96-7545 
        1.12        58.42 

$`3P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 
       20.45        48.33         0.56        38.17        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       18.84        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      173.79       141.34        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       50.24        51.78        32.68         9.04        10.82        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         8.09         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        3.39        47.80        74.07        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.88        18.28        18.08        13.12        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 
        1.58        66.51         6.64         6.35         9.96         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
        0.43         1.45         1.32         0.85        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        96.82        37.94        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2716 
       49.48        55.40        29.19         9.01        16.83        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       23.01        19.00        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         2.73         6.64        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        11.18        89.95         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
      106.95         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.33         0.36         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.46         1.18         1.35         1.55         2.93         0.59 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        0.16        39.88         3.78        13.58         7.33        10.13 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.79              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           103.53            173.79 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           19.415            14.085 
[1] "0.8 - 103.5 (19.4)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      5   28
  3P GAIN WILD-TYPE   75  199
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               5                75
  MALE                28               199
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1              10                60
  T2              15               172
  T3               3                29
  T4               5                13
D5V7, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0              22               169
  N1               8                76
  N2               3                23
  N3               0                 5
D5V8, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              29               242
  M1               1                 3
  MX               2                24
D5V9, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  I                15               141
  II                9                72
  III               8                54
  IV                1                 3
D5V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      1   32
  3P GAIN WILD-TYPE   10  264
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                1                10
  YES              32               264
D5V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      2   31
  3P GAIN WILD-TYPE   27  247
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                2                27
  YES              31               247

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED   77 53
  3Q GAIN WILD-TYPE 95 65
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              130               160 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               53                65 
$`3Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
        4.80        13.02        24.92         1.61        43.76         2.79 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       46.88        60.89       122.43         9.30         8.78        31.63 
TCGA-21-5783 TCGA-22-0940 TCGA-22-1002 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
       88.08        19.99         4.31        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        32.02         9.53        11.77        64.90 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       44.22        54.28        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 
       82.98        43.10       173.79       103.53        14.07        10.98 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5232 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
        2.63        61.61        51.78         9.04         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4132 TCGA-37-4133 
       22.95         5.52         1.08         3.95         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39         3.39        44.71        68.58        55.17 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2578 TCGA-43-3394 
       24.33        27.35        15.58         0.79        18.08        11.57 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 TCGA-46-3768 TCGA-46-6025 
       18.84        18.05         7.00        66.51         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-56-5897 TCGA-56-7223 
        0.59         0.39         2.07         5.85         0.10         0.99 
TCGA-60-2695 TCGA-60-2706 TCGA-60-2708 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       15.55        82.19        68.45        55.40         9.01        47.87 
TCGA-60-2715 TCGA-60-2721 TCGA-60-2723 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.34        26.07        22.78        11.77        16.96        43.10 
TCGA-66-2744 TCGA-66-2756 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99         0.99        25.02         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         3.02         2.01        12.03         3.98 
TCGA-66-2783 TCGA-66-2787 TCGA-66-2789 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 
       24.95        40.01         4.04        29.56        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7465 TCGA-77-8133 
       89.95        20.78         0.49        70.09        15.75        53.92 
TCGA-77-8140 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-85-6560 TCGA-85-6561 
       11.54         6.97         9.63        54.41         0.36         0.79 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 TCGA-85-8052 TCGA-85-8072 
        1.12         0.33         1.15         1.25         0.53         1.18 
TCGA-90-7766 TCGA-90-7767 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        1.55         2.93         4.01         5.26         2.27         2.86 
TCGA-96-7544 TCGA-96-7545 TCGA-98-8021 TCGA-98-8022 
       39.88        58.42        13.58         7.33 

$`3Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       59.51        28.34         6.15        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
      115.59        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1082 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 
      119.80        29.85        21.57        10.82         7.33        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
       64.21         1.74        14.10        27.02        48.82        48.33 
TCGA-22-4596 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
        0.56        13.12        19.30        31.69        63.52        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-33-4533 
        0.79        71.34        79.20        11.74        18.84       114.05 
TCGA-33-4538 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 
       97.94       141.34        54.44        19.76        26.99        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5234 TCGA-34-5239 
       28.96        32.84        31.23        50.24        32.68        10.82 
TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-39-5011 
        4.96         0.43         0.39         6.54         8.09        47.80 
TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5034 
       74.07        70.03        60.76         1.71         1.94        36.39 
TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-5668 TCGA-43-6647 
       35.64        17.88        18.28        13.12         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 
        2.79         5.42         3.78         6.97         1.58         6.64 
TCGA-43-8116 TCGA-51-4079 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        6.35         0.39        17.79         8.75        27.45        28.93 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 
        2.04         1.02         0.99         0.43         1.45         1.32 
TCGA-56-7582 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
        0.85         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2711 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 
       21.70        49.48        29.19        16.83        38.83        30.61 
TCGA-60-2720 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-66-2737 TCGA-66-2742 
        3.16        24.10         1.22        23.64         2.01        21.07 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        1.02         2.01         0.92         0.99        20.98         0.99 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2778 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
        2.01         7.07        19.00        12.00         1.94        25.97 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-6844 
        4.01        49.05         2.73         6.64        73.08        75.09 
TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 
       42.25       106.95         0.16        46.78        37.81        82.92 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 
       12.59        39.09        17.69       104.09        26.40        27.39 
TCGA-77-8154 TCGA-77-8156 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-8048 
       35.90         0.33         0.59         1.61         0.03         0.85 
TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 
        1.97         1.41         0.46         1.35         0.59         2.70 
TCGA-92-7341 TCGA-94-7557 TCGA-98-7454 TCGA-98-8023 
        3.48         0.16         3.78        10.13 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.10              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           173.79            141.34 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           13.825            16.190 
[1] "0.1 - 173.8 (13.8)" "0.0 - 141.3 (16.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     36  100
  3Q GAIN WILD-TYPE   44  127
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              36                44
  MALE               100               127
D6V4, continuous
D6V5, multiclass
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1              36                34
  T2              78               109
  T3              14                18
  T4               8                10
D6V7, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0              84               107
  N1              38                46
  N2              11                15
  N3               3                 2
D6V8, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0             121               150
  M1               3                 1
  MX              10                16
D6V9, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  I                68                88
  II               37                44
  III              28                34
  IV                3                 1
D6V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      5  131
  3Q GAIN WILD-TYPE    6  165
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                5                 6
  YES             131               165
D6V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      8  128
  3Q GAIN WILD-TYPE   21  150
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                8                21
  YES             128               150

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     5   3
  4P GAIN WILD-TYPE 167 115
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                8               282 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3               115 
$`4P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-1017 TCGA-22-4591 TCGA-37-4130 TCGA-43-3920 
       79.46         4.80        48.82        20.45         8.09        18.84 
TCGA-43-8116 TCGA-90-7767 
        6.35         2.93 

$`4P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
        4.31        64.21         1.74        14.10        27.02        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         0.39         6.54         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
       17.88        18.28        18.08        13.12        11.57         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 
        6.97         1.58        66.51         6.64         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.59         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-92-7340 
        0.46         1.18         1.35         1.55         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             2.93              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            79.46            173.79 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           13.465            14.765 
[1] "2.9 - 79.5 (13.5)"  "0.0 - 173.8 (14.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0   11
  4P GAIN WILD-TYPE   80  216
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               0                80
  MALE                11               216
D7V4, continuous
D7V5, multiclass
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               4                66
  T2               3               184
  T3               3                29
  T4               1                17
D7V7, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0               8               183
  N1               2                82
  N2               1                25
  N3               0                 5
D7V8, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              10               261
  M1               0                 4
  MX               1                25
D7V9, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  I                 4               152
  II                3                78
  III               3                59
  IV                0                 4
D7V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0   11
  4P GAIN WILD-TYPE   11  285
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                0                11
  YES              11               285
D7V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0   11
  4P GAIN WILD-TYPE   29  267
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                0                29
  YES              11               267

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     3   1
  4Q GAIN WILD-TYPE 169 117
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4               286 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                1               117 
$`4Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 TCGA-56-7579 
       79.46         4.80        28.34         1.45 

$`4Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.99         1.32         0.85        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         2.73         6.64        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       70.09       106.95         0.16        46.78        15.75        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.55         2.93         0.59         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             1.45              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            79.46            173.79 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           16.570            14.765 
[1] "1.4 - 79.5 (16.6)"  "0.0 - 173.8 (14.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    5
  4Q GAIN WILD-TYPE   80  222
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               0                80
  MALE                 5               222
D8V4, continuous
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                1                51 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3414        TCGA-18-3419 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5787        TCGA-22-1017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5483        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-56-7222        TCGA-60-2696        TCGA-60-2698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-85-7843        TCGA-85-7844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-98-7454 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
D8V5, multiclass
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               1                69
  T2               1               186
  T3               2                30
  T4               1                17
D8V7, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0               3               188
  N1               2                82
  N2               0                26
  N3               0                 5
D8V8, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               5               266
  M1               0                 4
  MX               0                26
D8V9, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  I                 0               156
  II                2                79
  III               2                60
  IV                0                 4
D8V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    5
  4Q GAIN WILD-TYPE   11  291
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                0                11
  YES               5               291
D8V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    5
  4Q GAIN WILD-TYPE   29  273
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                0                29
  YES               5               273

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED   87 48
  5P GAIN WILD-TYPE 85 70
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              135               155 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               48                70 
$`5P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 TCGA-18-5592 TCGA-21-1072 
       11.34        13.02        24.92        43.76         3.02        99.16 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 
       70.13        34.78       122.43         9.30        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82        19.99         1.74        14.10 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4609 TCGA-22-4613 TCGA-22-5473 
       35.08        48.33        24.13         9.53        11.77        63.52 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 TCGA-33-4533 TCGA-33-4547 
       44.22         0.79        11.74        18.84       114.05        43.10 
TCGA-33-4566 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-2608 TCGA-34-2609 
      173.79        54.44        26.99         2.63        32.84        31.23 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82         7.73        14.07         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        1.08         3.95         0.39         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 
       74.07        68.58        55.17        70.03        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       27.35        15.58        35.64        17.88        11.57        18.84 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       18.05         7.00         6.02         6.97         1.58        66.51 
TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 
        6.35         0.95         0.59         5.85         8.75        28.93 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        2.04         1.02         0.43         1.32         0.85        15.55 
TCGA-60-2703 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 
       96.82        29.19        47.87        16.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         1.02         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 TCGA-66-2786 
       25.02         1.02         7.07        23.01        19.00        25.97 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7756 TCGA-77-6842 TCGA-77-6844 
       30.02        54.08         4.01         6.64        29.56        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 
       23.28        11.18       106.95        46.78        15.75        82.92 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6798 
       26.40         6.97        54.41         0.33         0.36         1.12 
TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8071 
        0.59         0.03         1.15         1.25         0.85         0.46 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-96-7544 
        1.55         2.93         0.59         2.70         3.48        39.88 
TCGA-96-7545 TCGA-98-8022 TCGA-98-8023 
       58.42         7.33        10.13 

$`5P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       59.51        28.34         1.61         6.15         2.79        90.51 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
       27.16       115.59        46.88        60.89        15.55        31.69 
TCGA-21-1082 TCGA-21-1083 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
      119.80         8.78         7.33        14.93         4.31        64.21 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       27.02        48.82        20.45         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        32.02        19.30        31.69        64.90        14.60 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       54.28        71.34        79.20        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       16.60        82.98        97.94       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5231 
       10.98        19.76        61.61        31.50        28.96        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5927 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
       51.78        32.68        22.95         0.43         6.54         8.09 
TCGA-37-4132 TCGA-37-4135 TCGA-39-5011 TCGA-39-5019 TCGA-39-5027 TCGA-39-5028 
        7.46         6.81        47.80        44.71        60.76         1.71 
TCGA-39-5034 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 
       36.39         0.79        18.28        18.08        13.12         8.48 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-46-3768 TCGA-51-4079 
        2.79         5.42         3.78         6.64         9.96         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-5897 TCGA-56-7221 
        0.39         2.07        17.79        27.45         0.10         0.99 
TCGA-56-7223 TCGA-56-7579 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
        0.99         1.45         3.58        12.23        10.22        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       82.19        21.70        68.45        49.48        55.40         9.01 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2722 TCGA-66-2734 TCGA-66-2737 TCGA-66-2754 
       35.34        38.83        24.10        43.10         2.01         2.01 
TCGA-66-2755 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 
        0.92         0.99         2.01         2.01         2.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02         2.01        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        1.94        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2793 TCGA-66-2800 TCGA-68-7755 TCGA-77-6843 TCGA-77-7139 TCGA-77-7140 
       10.06        49.05         2.73        73.08        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-8128 TCGA-77-8131 
        0.49        42.25        70.09         0.16        37.81        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       53.92        39.09        17.69       104.09        11.54        27.39 
TCGA-77-8148 TCGA-77-8154 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-8049 
        9.63        35.90         0.79         0.33         1.61         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-90-6837 TCGA-92-8063 TCGA-92-8064 
        0.53         1.41         1.18         1.35         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-98-7454 TCGA-98-8021 
        2.27         2.86         0.16         3.78        13.58 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.03              0.10 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           173.79            141.34 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            14.07             15.55 
[1] "0.0 - 173.8 (14.1)" "0.1 - 141.3 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     33  108
  5P GAIN WILD-TYPE   47  119
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              33                47
  MALE               108               119
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              24                46
  T2              94                93
  T3              12                20
  T4              11                 7
D9V7, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0              85               106
  N1              42                42
  N2              13                13
  N3               1                 4
D9V8, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0             122               149
  M1               3                 1
  MX              14                12
D9V9, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  I                69                87
  II               38                43
  III              29                33
  IV                3                 1
D9V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      5  136
  5P GAIN WILD-TYPE    6  160
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                5                 6
  YES             136               160
D9V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     14  127
  5P GAIN WILD-TYPE   15  151
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               14                15
  YES             127               151

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    19  11
  5Q GAIN WILD-TYPE 153 107
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               30               260 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               11               107 
$`5Q GAIN MUTATED`
TCGA-18-3417 TCGA-18-5592 TCGA-21-1075 TCGA-21-5782 TCGA-22-1012 TCGA-22-4595 
       24.92         3.02        70.13        31.63        14.10        24.13 
TCGA-22-5478 TCGA-22-5482 TCGA-34-2596 TCGA-34-5241 TCGA-34-5928 TCGA-37-3792 
        0.79        11.74         2.63        14.07         5.52         0.39 
TCGA-43-3920 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-60-2719 TCGA-60-2724 
       18.84         7.00         1.58        66.51        30.61         1.22 
TCGA-66-2786 TCGA-66-2792 TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 TCGA-77-7337 
       25.97        30.02        29.56        75.09        11.18       106.95 
TCGA-77-7463 TCGA-77-7465 TCGA-85-7699 TCGA-85-8048 TCGA-92-7340 TCGA-96-7545 
       46.78        15.75         0.03         0.85         2.70        58.42 

$`5Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
        9.30       119.80         8.78        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
        1.74        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 
       44.22        54.28        71.34        79.20        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76        26.99        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       10.82         7.73        22.95         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 
       18.28        18.08        13.12        11.57         8.48        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 
        6.02         2.79         5.42         3.78         6.97         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.45         1.32         0.85        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        38.83         3.16        26.07        24.10        22.78 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       40.01        22.98         4.04        22.98         5.03        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 
       54.08         4.01        49.05         2.73         6.64        73.08 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7338 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
        0.16        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         0.33         1.61         1.15         1.25 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        1.55         2.93         0.59         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-98-7454 TCGA-98-8021 
        2.27         2.86         0.16        39.88         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.03              0.10 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           106.95            173.79 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           14.925            14.765 
[1] "0.0 - 107.0 (14.9)" "0.1 - 173.8 (14.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      8   24
  5Q GAIN WILD-TYPE   72  203
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               8                72
  MALE                24               203
D10V4, continuous
D10V5, multiclass
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               7                63
  T2              20               167
  T3               4                28
  T4               1                17
D10V7, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0              19               172
  N1              12                72
  N2               1                25
  N3               0                 5
D10V8, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              27               244
  M1               1                 3
  MX               3                23
D10V9, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  I                17               139
  II               10                71
  III               4                58
  IV                1                 3
D10V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      2   30
  5Q GAIN WILD-TYPE    9  266
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                2                 9
  YES              30               266
D10V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      3   29
  5Q GAIN WILD-TYPE   26  249
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                3                26
  YES              29               249

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    20   7
  6P GAIN WILD-TYPE 152 111
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               27               263 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                7               111 
$`6P GAIN MUTATED`
TCGA-21-1072 TCGA-21-1077 TCGA-21-5787 TCGA-22-4601 TCGA-22-4607 TCGA-22-5482 
       99.16        34.78        10.82        34.75        19.30        11.74 
TCGA-33-4587 TCGA-34-5928 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
       54.44         5.52         8.09         7.46         7.82         6.81 
TCGA-43-2578 TCGA-43-5670 TCGA-46-6026 TCGA-56-6545 TCGA-66-2754 TCGA-66-2757 
       18.08        18.05         0.59         2.04         2.01         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2793 TCGA-77-7465 TCGA-77-8156 TCGA-85-6560 
        2.01         1.02        10.06        15.75         0.33         0.36 
TCGA-85-6798 TCGA-85-7843 TCGA-98-8022 
        1.12         1.15         7.33 

$`6P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
      115.59        46.88        70.13        60.89        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        21.57        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       35.08        48.33        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       14.07        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       18.28        13.12        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
       66.51         6.64         6.35         9.96         0.95         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       28.93         0.10         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.45         1.32         0.85        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         0.99         1.02         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       20.98        25.02         0.99         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       22.98         4.04        22.98         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 
        4.01        49.05         2.73         6.64        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 
       42.25        70.09       106.95         0.16        46.78        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       35.90         0.79         0.59         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.18         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 
       39.88        58.42         3.78        13.58        10.13 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.33              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            99.16            173.79 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             7.46             16.83 
[1] "0.3 - 99.2 (7.5)"   "0.0 - 173.8 (16.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      8   21
  6P GAIN WILD-TYPE   72  206
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               8                72
  MALE                21               206
D11V4, continuous
D11V5, multiclass
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1               4                66
  T2              20               167
  T3               1                31
  T4               4                14
D11V7, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              18               173
  N1               8                76
  N2               3                23
  N3               0                 5
D11V8, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              27               244
  M1               1                 3
  MX               1                25
D11V9, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  I                11               145
  II                8                73
  III               9                53
  IV                1                 3
D11V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2   27
  6P GAIN WILD-TYPE    9  269
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                2                 9
  YES              27               269
D11V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2   27
  6P GAIN WILD-TYPE   27  251
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                2                27
  YES              27               251

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    12   3
  6Q GAIN WILD-TYPE 160 115
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               15               275 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3               115 
$`6Q GAIN MUTATED`
TCGA-22-5482 TCGA-33-4547 TCGA-33-4587 TCGA-37-4135 TCGA-43-2578 TCGA-43-3920 
       11.74        43.10        54.44         6.81        18.08        18.84 
TCGA-43-5670 TCGA-46-6026 TCGA-66-2757 TCGA-66-2765 TCGA-66-2793 TCGA-77-7465 
       18.05         0.59         0.99         2.01        10.06        15.75 
TCGA-85-6798 TCGA-85-7843 TCGA-98-8022 
        1.12         1.15         7.33 

$`6Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       44.22         0.79        54.28        71.34        79.20        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       97.94       173.79       103.53       141.34        14.07        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
        0.79        17.88        18.28        13.12        11.57         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        1.58        66.51         6.64         6.35         9.96         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        2.73         6.64        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
      106.95         0.16        46.78        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.36         0.79         0.59         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.18         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 
       39.88        58.42         3.78        13.58        10.13 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.59              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            54.44            173.79 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            10.06             15.55 
[1] "0.6 - 54.4 (10.1)"  "0.0 - 173.8 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      4   12
  6Q GAIN WILD-TYPE   76  215
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               4                76
  MALE                12               215
D12V4, continuous
D12V5, multiclass
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               3                67
  T2              10               177
  T3               1                31
  T4               2                16
D12V7, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0              11               180
  N1               5                79
  N2               0                26
  N3               0                 5
D12V8, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0              15               256
  M1               0                 4
  MX               1                25
D12V9, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  I                 8               148
  II                5                76
  III               3                59
  IV                0                 4
D12V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      1   15
  6Q GAIN WILD-TYPE   10  281
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                1                10
  YES              15               281
D12V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      2   14
  6Q GAIN WILD-TYPE   27  264
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                2                27
  YES              14               264

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    50  28
  7P GAIN WILD-TYPE 122  90
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               78               212 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               28                90 
$`7P GAIN MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 
       46.52        11.34        24.92        43.76         6.15         3.02 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 
       99.16        70.13        60.89        31.69         9.30        88.08 
TCGA-21-5784 TCGA-22-1012 TCGA-22-4591 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       29.85        14.10        20.45        24.13         0.56        38.17 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 
       31.69        63.52        44.22         0.79        11.74        18.84 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      114.05        97.94       173.79         2.63        28.96        31.23 
TCGA-34-5231 TCGA-34-5236 TCGA-34-5240 TCGA-34-5928 TCGA-37-3783 TCGA-37-4130 
       50.24         9.04         7.73         5.52         3.95         8.09 
TCGA-37-4135 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5031 TCGA-43-3394 
        6.81        47.80        74.07        44.71        27.35        11.57 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6771 TCGA-43-7657 TCGA-52-7809 TCGA-56-7223 
       18.84        18.05         5.42         1.58         5.85         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 
        1.45         0.85        82.19        68.45        29.19        16.83 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2742 TCGA-66-2755 TCGA-66-2767 
       24.10        22.78        11.77        21.07         0.92         2.01 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2800 TCGA-68-7755 TCGA-77-6845 TCGA-77-7138 
       12.00         1.94        49.05         2.73        23.28        11.18 
TCGA-77-7140 TCGA-77-7463 TCGA-77-7465 TCGA-77-8148 TCGA-77-8156 TCGA-85-6561 
       20.78        46.78        15.75         9.63         0.33         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7844 TCGA-85-8049 TCGA-90-7769 TCGA-92-7341 
        1.12         0.59         1.25         1.97         0.59         3.48 

$`7P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 
       12.16         4.47        81.07        79.46         4.80        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       59.51        28.34         1.61         2.79        90.51        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 
      115.59        46.88        34.78        15.55       122.43       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
        8.78        31.63        21.57        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 
       14.93         4.31        64.21         1.74        27.02        48.82 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       35.08        48.33        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
        9.53        11.77        64.90        14.60        54.28        71.34 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       79.20        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 
       19.76        26.99        61.61        31.50        32.84        51.78 
TCGA-34-5234 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       32.68        10.82        14.07        22.95         4.96         1.08 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 
        0.43         0.39         6.54         7.46         7.82         0.39 
TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        3.39        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 
       17.88        18.28        18.08        13.12         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 
        6.02         2.79         3.78         6.97        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        2.07        17.79         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 TCGA-60-2695 
        2.04         1.02         0.99         0.43         1.32        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 
        3.58        12.23        10.22        96.82        37.94        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       49.48        55.40         9.01        47.87        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       30.61         3.16        26.07         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
       43.10         2.01         0.99         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       19.00        12.03         3.98        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       54.08         4.01         6.64        29.56        73.08        75.09 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       89.95         0.49        42.25        70.09       106.95         0.16 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 
      104.09        11.54        26.40        27.39         6.97        54.41 
TCGA-77-8154 TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
       35.90         0.36         0.33         1.61         0.03         1.15 
TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        0.85         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        1.55         2.93         2.70         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.33              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           173.79            141.34 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           16.290            14.335 
[1] "0.3 - 173.8 (16.3)" "0.0 - 141.3 (14.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     20   64
  7P GAIN WILD-TYPE   60  163
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              20                60
  MALE                64               163
D13V4, continuous
D13V5, multiclass
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              13                57
  T2              54               133
  T3              15                17
  T4               2                16
D13V7, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0              52               139
  N1              26                58
  N2               5                21
  N3               1                 4
D13V8, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              76               195
  M1               2                 2
  MX               5                21
D13V9, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  I                41               115
  II               26                55
  III              15                47
  IV                2                 2
D13V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      2   82
  7P GAIN WILD-TYPE    9  214
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                2                 9
  YES              82               214
D13V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      9   75
  7P GAIN WILD-TYPE   20  203
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                9                20
  YES              75               203

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    50  26
  7Q GAIN WILD-TYPE 122  92
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               76               214 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               26                92 
$`7Q GAIN MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-18-3417 TCGA-18-4083 TCGA-21-1075 TCGA-21-1076 
       46.52        11.34        24.92         6.15        70.13        60.89 
TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-22-1012 TCGA-22-4591 TCGA-22-4595 
       31.69         9.30        88.08        14.10        20.45        24.13 
TCGA-22-4599 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5483 
       38.17        31.69        63.52        44.22         0.79        18.84 
TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
       16.60       114.05        97.94         2.63        61.61        28.96 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 
       31.23        50.24         9.04         7.73         5.52         1.08 
TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 TCGA-39-5019 TCGA-39-5027 
        3.95         7.82         6.81        47.80        44.71        60.76 
TCGA-39-5031 TCGA-43-3394 TCGA-43-3920 TCGA-43-7657 TCGA-52-7809 TCGA-56-7223 
       27.35        11.57        18.84         1.58         5.85         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 
        1.45         0.85        82.19        68.45        29.19        16.83 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2742 TCGA-66-2755 TCGA-66-2758 
       24.10        22.78        11.77        21.07         0.92        20.98 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2782 TCGA-66-2785 TCGA-66-2792 TCGA-66-2794 
        1.02         2.01        12.00         1.94        30.02        54.08 
TCGA-66-2800 TCGA-68-7755 TCGA-77-6845 TCGA-77-7141 TCGA-77-7463 TCGA-77-7465 
       49.05         2.73        23.28         0.49        46.78        15.75 
TCGA-77-8128 TCGA-77-8148 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       37.81         9.63         0.33         0.79         1.12         0.59 
TCGA-85-8049 TCGA-85-8070 TCGA-90-7769 TCGA-92-7341 
        1.97         1.41         0.59         3.48 

$`7Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 
       12.16         4.47        81.07        79.46         4.80        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       59.51        28.34         1.61        43.76         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 
        3.02        27.16       115.59        46.88        99.16        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
       15.55       122.43       119.80         8.78        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
       64.21         1.74        27.02        48.82        35.08        48.33 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       11.77        64.90        14.60        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4547 
       11.74        30.08        62.86        56.32        82.98        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       19.76        26.99        31.50        32.84        51.78        32.68 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 
       10.82        14.07        22.95         4.96         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        6.54         8.09         7.46         0.39         3.39        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       18.08        13.12         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 
        2.79         5.42         3.78         6.97        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        2.07        17.79         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 TCGA-60-2695 
        2.04         1.02         0.99         0.43         1.32        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 
        3.58        12.23        10.22        96.82        37.94        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       49.48        55.40         9.01        47.87        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       30.61         3.16        26.07         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
       43.10         2.01         0.99         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 
        0.99        25.02         0.99         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
        3.98        24.95        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-68-7756 TCGA-77-6842 
       22.98         5.03        10.06         4.01         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 
       73.08        75.09        11.18        89.95        20.78        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       70.09       106.95         0.16        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 
        6.97        54.41        35.90         0.36         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8052 TCGA-85-8071 
        0.03         1.15         1.25         0.85         0.53         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-92-7340 TCGA-92-8063 
        1.18         1.35         1.55         2.93         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.33              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           114.05            173.79 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           16.715            14.070 
[1] "0.3 - 114.0 (16.7)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     18   63
  7Q GAIN WILD-TYPE   62  164
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              18                62
  MALE                63               164
D14V4, continuous
D14V5, multiclass
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              11                59
  T2              52               135
  T3              14                18
  T4               4                14
D14V7, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0              48               143
  N1              23                61
  N2               9                17
  N3               1                 4
D14V8, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0              74               197
  M1               2                 2
  MX               4                22
D14V9, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  I                36               120
  II               24                57
  III              19                43
  IV                2                 2
D14V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      2   79
  7Q GAIN WILD-TYPE    9  217
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                2                 9
  YES              79               217
D14V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      8   73
  7Q GAIN WILD-TYPE   21  205
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                8                21
  YES              73               205

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    22  18
  8P GAIN WILD-TYPE 150 100
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               40               250 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               18               100 
$`8P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-21-5783 TCGA-21-5784 TCGA-22-4595 
       79.46         4.80        13.02        88.08        29.85        24.13 
TCGA-22-4596 TCGA-22-5482 TCGA-22-5489 TCGA-33-4532 TCGA-33-4587 TCGA-33-6737 
        0.56        11.74        62.86        82.98        54.44        19.76 
TCGA-34-5231 TCGA-34-5239 TCGA-34-5928 TCGA-34-7107 TCGA-37-4132 TCGA-39-5024 
       50.24        10.82         5.52         1.08         7.46        70.03 
TCGA-39-5034 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-52-7811 TCGA-56-1622 
       36.39        18.08        18.84        18.05         8.75        28.93 
TCGA-60-2695 TCGA-60-2708 TCGA-60-2719 TCGA-60-2722 TCGA-66-2773 TCGA-66-2781 
       15.55        68.45        30.61        24.10         3.02         3.98 
TCGA-66-2788 TCGA-66-2793 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7463 
       22.98        10.06        89.95         0.49        70.09        46.78 
TCGA-77-7465 TCGA-77-8143 TCGA-85-6560 TCGA-90-7769 
       15.75        26.40         0.36         0.59 

$`8P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
        9.30       119.80         8.78        31.63        21.57        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 
        0.79        54.28        71.34        79.20        18.84        30.08 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
      103.53       141.34        14.07        10.98        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       61.61        31.50        28.96        32.84        31.23        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       32.68         9.04         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 
        3.95         0.43         0.39         6.54         8.09         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       27.35        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       13.12        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 
        2.07        17.79         5.85        27.45         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
        0.85         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       82.19        21.70        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       47.87        16.83        35.34        38.83         3.16        26.07 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        2.01        19.00        12.03        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01         4.04        22.98         5.03        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
       54.08         4.01        49.05         2.73         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 
       73.08        75.09        23.28        11.18        20.78        42.25 
TCGA-77-7337 TCGA-77-7338 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
      106.95         0.16        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 
       39.09        17.69       104.09        11.54        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 
        9.63        54.41        35.90         0.33         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.35         1.55         2.93         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.36              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            89.95            173.79 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            19.30             13.35 
[1] "0.4 - 90.0 (19.3)"  "0.0 - 173.8 (13.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     12   31
  8P GAIN WILD-TYPE   68  196
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              12                68
  MALE                31               196
D15V4, continuous
D15V5, multiclass
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1               8                62
  T2              28               159
  T3               3                29
  T4               4                14
D15V7, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              28               163
  N1              10                74
  N2               5                21
  N3               0                 5
D15V8, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              38               233
  M1               2                 2
  MX               2                24
D15V9, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  I                20               136
  II               11                70
  III               9                53
  IV                2                 2
D15V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      3   40
  8P GAIN WILD-TYPE    8  256
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                3                 8
  YES              40               256
D15V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      7   36
  8P GAIN WILD-TYPE   22  242
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                7                22
  YES              36               242

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED    42  38
  8Q GAIN WILD-TYPE 130  80
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               80               210 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               38                80 
$`8Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 
       79.46         4.80        11.34        13.02        24.92        43.76 
TCGA-18-5595 TCGA-21-1075 TCGA-21-1081 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 
       27.16        70.13         9.30         8.78        88.08        29.85 
TCGA-21-5787 TCGA-22-1016 TCGA-22-4595 TCGA-22-4596 TCGA-22-4609 TCGA-22-4613 
       10.82        27.02        24.13         0.56         9.53        11.77 
TCGA-22-5473 TCGA-22-5478 TCGA-22-5481 TCGA-22-5482 TCGA-22-5489 TCGA-33-4532 
       63.52         0.79        79.20        11.74        62.86        82.98 
TCGA-33-6737 TCGA-34-2605 TCGA-34-5231 TCGA-34-5239 TCGA-34-5928 TCGA-37-3789 
       19.76        28.96        50.24        10.82         5.52         0.43 
TCGA-37-4132 TCGA-37-5819 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5034 
        7.46         3.39        70.03         1.71        24.33        36.39 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-7657 TCGA-52-7811 TCGA-56-1622 
       18.08        18.84        18.05         1.58         8.75        28.93 
TCGA-56-6546 TCGA-60-2695 TCGA-60-2707 TCGA-60-2708 TCGA-60-2714 TCGA-60-2719 
        1.02        15.55        21.70        68.45        16.83        30.61 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2744 TCGA-66-2756 
       24.10        22.78         1.22        11.77         0.99         0.99 
TCGA-66-2757 TCGA-66-2763 TCGA-66-2769 TCGA-66-2773 TCGA-66-2782 TCGA-66-2788 
        0.99         0.99         7.07         3.02        12.00        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-66-2800 TCGA-77-6844 TCGA-77-7139 
        4.04        22.98        10.06        49.05        75.09        89.95 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
        0.49        70.09       106.95        46.78        15.75        37.81 
TCGA-77-8131 TCGA-77-8139 TCGA-77-8143 TCGA-77-8148 TCGA-85-6560 TCGA-90-7767 
       12.59       104.09        26.40         9.63         0.36         2.93 
TCGA-90-7769 TCGA-92-7341 
        0.59         3.48 

$`8Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 
       12.16         4.47        81.07        46.52        59.51        28.34 
TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 
        1.61         6.15         2.79        90.51         3.02       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 
      122.43       119.80        31.63        21.57        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 
       14.93         4.31        64.21         1.74        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        48.33        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       32.02        19.30        31.69        64.90        14.60        44.22 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
       54.28        71.34        18.84        30.08        56.32        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       14.07        54.44        10.98        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       31.50        32.84        31.23        51.78        32.68         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
        7.73        14.07        22.95         4.96         1.08         3.95 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         8.09         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 
       47.80        74.07        44.71        68.58        55.17        60.76 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.28        13.12        11.57         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 
        2.79         5.42         3.78         6.97        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 
        2.07        17.79         5.85        27.45         0.10         2.04 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       38.83         3.16        26.07        23.64        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 
        2.01        21.07         1.02         2.01         0.92        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
       19.00         2.01        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
        1.94        25.97        40.01         5.03        30.02        54.08 
TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 
        4.01         2.73         6.64        29.56        73.08        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7338 TCGA-77-8130 TCGA-77-8133 
       11.18        20.78        42.25         0.16        82.92        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 
       39.09        17.69        11.54        27.39         6.97        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       35.90         0.33         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.36              0.03 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           106.95            173.79 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           16.290            14.085 
[1] "0.4 - 107.0 (16.3)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     20   65
  8Q GAIN WILD-TYPE   60  162
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              20                60
  MALE                65               162
D16V4, continuous
D16V5, multiclass
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              15                55
  T2              51               136
  T3              10                22
  T4               9                 9
D16V7, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0              49               142
  N1              25                59
  N2               9                17
  N3               1                 4
D16V8, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              75               196
  M1               3                 1
  MX               5                21
D16V9, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  I                36               120
  II               22                59
  III              22                40
  IV                3                 1
D16V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      5   80
  8Q GAIN WILD-TYPE    6  216
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                5                 6
  YES              80               216
D16V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     10   75
  8Q GAIN WILD-TYPE   19  203
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               10                19
  YES              75               203

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    13   6
  9P GAIN WILD-TYPE 159 112
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               19               271 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                6               112 
$`9P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3416 TCGA-22-5481 TCGA-33-4566 TCGA-33-4583 TCGA-33-4589 
        4.80        28.34        79.20       173.79       141.34        10.98 
TCGA-34-5239 TCGA-34-5240 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 TCGA-43-6143 
       10.82         7.73         1.08         0.39         7.82         7.00 
TCGA-43-7658 TCGA-51-4079 TCGA-52-7622 TCGA-60-2695 TCGA-60-2722 TCGA-77-7465 
       66.51         0.39        17.79        15.55        24.10        15.75 
TCGA-92-8064 
        5.26 

$`9P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       54.28        71.34        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
      103.53        14.07        54.44        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68         9.04        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        4.96         3.95         0.43         6.54         8.09         7.46 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        6.97         1.58         6.64         6.35         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.59         0.39         2.07         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2696 TCGA-60-2697 
        0.99         1.45         1.32         0.85         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       35.34        38.83        30.61         3.16        26.07        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        2.73         6.64        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
      106.95         0.16        46.78        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        1.41         0.46         1.18         1.35         1.55         2.93 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        0.59         2.70         3.48         4.01         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        0.16        39.88        58.42         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.39              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           173.79            122.43 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            10.98             14.93 
[1] "0.4 - 173.8 (11.0)" "0.0 - 122.4 (14.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      7   12
  9P GAIN WILD-TYPE   73  215
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE               7                73
  MALE                12               215
D17V4, continuous
[1] "Remove cluster labels:" "9P GAIN MUTATED"       
clus
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                2                50 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3414        TCGA-18-3419 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5787        TCGA-22-1017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5483        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4135        TCGA-37-5819        TCGA-43-2576 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-60-2696        TCGA-60-2698        TCGA-60-2712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2725        TCGA-60-2726        TCGA-70-6722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-70-6723        TCGA-85-7843        TCGA-85-7844        TCGA-92-7340 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7341        TCGA-98-7454 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
D17V5, multiclass
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               3                67
  T2              13               174
  T3               1                31
  T4               2                16
D17V7, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              13               178
  N1               6                78
  N2               0                26
  N3               0                 5
D17V8, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              17               254
  M1               0                 4
  MX               1                25
D17V9, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  I                 9               147
  II                7                74
  III               3                59
  IV                0                 4
D17V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0   19
  9P GAIN WILD-TYPE   11  277
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                11
  YES              19               277
D17V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      2   17
  9P GAIN WILD-TYPE   27  261
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                2                27
  YES              17               261

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    19   9
  9Q GAIN WILD-TYPE 153 109
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               262 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                9               109 
$`9Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3416 TCGA-22-5483 TCGA-33-4566 TCGA-33-4583 TCGA-33-4589 
        4.80        28.34        18.84       173.79       141.34        10.98 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5239 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 
        2.63        61.61        10.82         1.08         0.39         7.82 
TCGA-39-5036 TCGA-43-3394 TCGA-43-6143 TCGA-43-7658 TCGA-51-4079 TCGA-52-7622 
       35.64        11.57         7.00        66.51         0.39        17.79 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2710 TCGA-60-2722 TCGA-66-2744 TCGA-66-2770 
        0.85        15.55        55.40        24.10         0.99        23.01 
TCGA-66-2792 TCGA-77-7335 TCGA-77-7465 TCGA-77-8144 
       30.02        70.09        15.75        27.39 

$`9Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       54.28        71.34        79.20        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 
      103.53        14.07        54.44        19.76        26.99        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 
        3.95         0.43         6.54         8.09         7.46         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       27.35        36.39        15.58         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       18.08        13.12        18.84         8.48        18.05         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 
        2.79         5.42         3.78         6.97         1.58         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
        6.35         9.96         0.95         0.59         0.39         2.07 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        5.85         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        49.48        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         7.07        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       20.78         0.49        42.25       106.95         0.16        46.78 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        11.54        26.40         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.55         2.93         0.59         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.39              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           173.79            122.43 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           16.770            14.085 
[1] "0.4 - 173.8 (16.8)" "0.0 - 122.4 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      8   20
  9Q GAIN WILD-TYPE   72  207
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               8                72
  MALE                20               207
D18V4, continuous
D18V5, multiclass
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               6                64
  T2              18               169
  T3               1                31
  T4               3                15
D18V7, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              18               173
  N1               9                75
  N2               1                25
  N3               0                 5
D18V8, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              27               244
  M1               0                 4
  MX               0                26
D18V9, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  I                14               142
  II               10                71
  III               4                58
  IV                0                 4
D18V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0   28
  9Q GAIN WILD-TYPE   11  268
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                11
  YES              28               268
D18V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      4   24
  9Q GAIN WILD-TYPE   25  254
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                4                25
  YES              24               254

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED     9   6
  10P GAIN WILD-TYPE 163 112
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                15                275 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 6                112 
$`10P GAIN MUTATED`
TCGA-18-3416 TCGA-18-3417 TCGA-21-5787 TCGA-22-5473 TCGA-33-4566 TCGA-33-6737 
       28.34        24.92        10.82        63.52       173.79        19.76 
TCGA-34-5928 TCGA-34-7107 TCGA-37-4133 TCGA-43-5670 TCGA-56-7222 TCGA-66-2778 
        5.52         1.08         7.82        18.05         0.43        19.00 
TCGA-77-8143 TCGA-85-6560 TCGA-98-8022 
       26.40         0.36         7.33 

$`10P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       11.34        13.02        59.51         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        21.57        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       64.90        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
      141.34        14.07        54.44        10.98        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       22.95         4.96         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.32         0.85        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        2.01        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        6.64        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        0.16        46.78        15.75        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       53.92        39.09        17.69       104.09        11.54        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 
        6.97         9.63        54.41        35.90         0.33         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.18         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 
       39.88        58.42         3.78        13.58        10.13 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.36               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            173.79             141.34 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             18.05              14.60 
[1] "0.4 - 173.8 (18.1)" "0.0 - 141.3 (14.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      3   12
  10P GAIN WILD-TYPE   77  215
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                3                 77
  MALE                 12                215
D19V4, continuous
D19V5, multiclass
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                1                 69
  T2               12                175
  T3                1                 31
  T4                1                 17
D19V7, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                7                184
  N1                4                 80
  N2                3                 23
  N3                1                  4
D19V8, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               13                258
  M1                1                  3
  MX                0                 26
D19V9, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  I                  3                153
  II                 4                 77
  III                6                 56
  IV                 1                  3
D19V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1   14
  10P GAIN WILD-TYPE   10  282
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 1                 10
  YES               14                282
D19V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      3   12
  10P GAIN WILD-TYPE   26  266
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 3                 26
  YES               12                266

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     3   3
  10Q GAIN WILD-TYPE 169 115
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                284 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                115 
$`10Q GAIN MUTATED`
TCGA-18-3416 TCGA-21-5787 TCGA-22-5473 TCGA-33-4566 TCGA-34-5928 TCGA-43-5670 
       28.34        10.82        63.52       173.79         5.52        18.05 

$`10Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       88.08        29.85        21.57        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.69        64.90        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
        7.73        14.07        22.95         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        0.95         0.59         0.39         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        5.85         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.85        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        6.64        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        0.16        46.78        15.75        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        1.41         0.46         1.18         1.35         1.55         2.93 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              5.52               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            173.79             141.34 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            23.195             14.350 
[1] "5.5 - 173.8 (23.2)" "0.0 - 141.3 (14.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
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        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
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        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
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        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    5
  10Q GAIN WILD-TYPE   79  222
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                1                 79
  MALE                  5                222
D20V4, continuous
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                 50 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5783         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4613         TCGA-22-5472 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5482         TCGA-22-5483 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5485         TCGA-22-5489         TCGA-22-5491 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5492         TCGA-34-5234         TCGA-37-4129 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-5819         TCGA-43-2576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-60-2696         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2715         TCGA-60-2725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2726         TCGA-70-6722         TCGA-70-6723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7843         TCGA-85-7844         TCGA-92-7340 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-98-7454 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
D20V5, multiclass
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                0                 70
  T2                5                182
  T3                1                 31
  T4                0                 18
D20V7, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                3                188
  N1                2                 82
  N2                1                 25
  N3                0                  5
D20V8, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0                6                265
  M1                0                  4
  MX                0                 26
D20V9, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  I                  2                154
  II                 3                 78
  III                1                 61
  IV                 0                  4
D20V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    5
  10Q GAIN WILD-TYPE   10  291
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                 10
  YES                5                291
D20V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2    4
  10Q GAIN WILD-TYPE   27  274
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 2                 27
  YES                4                274

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    10   7
  11P GAIN WILD-TYPE 162 111
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                273 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 7                111 
$`11P GAIN MUTATED`
TCGA-18-3410 TCGA-21-1072 TCGA-21-1079 TCGA-21-5783 TCGA-22-4591 TCGA-22-4595 
        4.80        99.16        31.69        88.08        20.45        24.13 
TCGA-39-5027 TCGA-39-5034 TCGA-60-2720 TCGA-60-2722 TCGA-66-2744 TCGA-66-2765 
       60.76        36.39         3.16        24.10         0.99         2.01 
TCGA-66-2766 TCGA-66-2770 TCGA-66-2785 TCGA-77-6845 TCGA-90-7767 
        1.02        23.01         1.94        23.28         2.93 

$`11P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
        9.30       119.80         8.78        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
        1.74        14.10        27.02        48.82        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 
       47.87        16.83        35.34        38.83        30.61        26.07 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        7.07        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 
        4.01        49.05         2.73         6.64        29.56        73.08 
TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       75.09        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       70.09       106.95         0.16        46.78        15.75        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        1.55         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        2.27         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.99               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             99.16             173.79 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             23.01              14.10 
[1] "1.0 - 99.2 (23.0)"  "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2   15
  11P GAIN WILD-TYPE   78  212
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                2                 78
  MALE                 15                212
D21V4, continuous
D21V5, multiclass
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                0                 70
  T2               11                176
  T3                6                 26
  T4                0                 18
D21V7, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               11                180
  N1                3                 81
  N2                3                 23
  N3                0                  5
D21V8, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               15                256
  M1                0                  4
  MX                1                 25
D21V9, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  I                  7                149
  II                 5                 76
  III                5                 57
  IV                 0                  4
D21V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1   16
  11P GAIN WILD-TYPE   10  280
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 1                 10
  YES               16                280
D21V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2   15
  11P GAIN WILD-TYPE   27  263
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 2                 27
  YES               15                263

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    12   8
  11Q GAIN WILD-TYPE 160 110
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                20                270 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 8                110 
$`11Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1072 TCGA-21-1079 TCGA-22-4591 TCGA-22-4595 TCGA-37-4135 
        4.80        99.16        31.69        20.45        24.13         6.81 
TCGA-37-5819 TCGA-39-5034 TCGA-43-5670 TCGA-43-6143 TCGA-60-2720 TCGA-66-2737 
        3.39        36.39        18.05         7.00         3.16         2.01 
TCGA-66-2763 TCGA-66-2789 TCGA-77-6845 TCGA-77-7141 TCGA-77-7337 TCGA-77-8154 
        0.99         4.04        23.28         0.49       106.95        35.90 
TCGA-85-6560 TCGA-85-7843 
        0.36         1.15 

$`11Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       13.12        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.45         1.32         0.85        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        38.83        30.61        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
       54.08         4.01        49.05         2.73         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 
       73.08        75.09        11.18        89.95        20.78        42.25 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
       70.09         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 
       26.40        27.39         6.97         9.63        54.41         0.33 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.18         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.36               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            106.95             173.79 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             6.905             15.240 
[1] "0.4 - 107.0 (6.9)"  "0.0 - 173.8 (15.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      3   17
  11Q GAIN WILD-TYPE   77  210
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                3                 77
  MALE                 17                210
D22V4, continuous
D22V5, multiclass
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                2                 68
  T2               12                175
  T3                6                 26
  T4                0                 18
D22V7, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               12                179
  N1                4                 80
  N2                3                 23
  N3                1                  4
D22V8, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               19                252
  M1                0                  4
  MX                0                 26
D22V9, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  I                  6                150
  II                 6                 75
  III                8                 54
  IV                 0                  4
D22V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1   19
  11Q GAIN WILD-TYPE   10  277
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 1                 10
  YES               19                277
D22V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      3   17
  11Q GAIN WILD-TYPE   26  261
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 3                 26
  YES               17                261

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    47  34
  12P GAIN WILD-TYPE 125  84
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                81                209 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                34                 84 
$`12P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-21-1072 TCGA-21-1079 TCGA-21-5782 
        4.80        11.34        24.92        99.16        31.69        31.63 
TCGA-21-5786 TCGA-22-1012 TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 
       21.57        14.10        20.45        24.13        38.17        13.12 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5489 TCGA-33-4538 TCGA-33-4566 
       31.69        63.52        44.22        62.86        97.94       173.79 
TCGA-33-4582 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      103.53        19.76        26.99         2.63        28.96        31.23 
TCGA-34-5231 TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-39-5019 TCGA-39-5021 
       50.24         7.73        14.07         1.08        44.71        68.58 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-5670 
       36.39        15.58        35.64         0.79        11.57        18.05 
TCGA-43-6770 TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-52-7811 
        2.79         6.35         0.95         0.59         2.07         8.75 
TCGA-56-7222 TCGA-56-7582 TCGA-60-2695 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
        0.43         0.85        15.55        10.22        96.82        82.19 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2744 
       68.45        29.19        22.78        23.64        11.77         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 
        2.01         0.99        20.98         1.02         2.01         7.07 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2794 TCGA-77-6842 TCGA-77-7140 TCGA-77-7141 
        3.98         1.94        54.08        29.56        20.78         0.49 
TCGA-77-7142 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8133 
       42.25       106.95        46.78        15.75        37.81        53.92 
TCGA-77-8138 TCGA-77-8148 TCGA-77-8156 TCGA-85-6560 TCGA-85-7699 TCGA-85-8049 
       17.69         9.63         0.33         0.36         0.03         1.97 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7341 
        2.93         0.59         3.48 

$`12P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 
       90.51         3.02        27.16       115.59        46.88        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.55       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
        8.78        88.08        29.85        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 
       14.93         4.31        64.21         1.74        27.02        48.82 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       35.08        48.33         0.56        34.75        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
        9.53        11.77        64.90        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 
       71.34        79.20        11.74        18.84        30.08        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4583 TCGA-33-4586 
       16.60        82.98       114.05        43.10       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 
       54.44        10.98        61.61        31.50        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       32.68         9.04        10.82        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
       27.35        17.88        18.28        18.08        13.12        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        8.48         7.00         6.02         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 
        1.58        66.51         6.64         9.96         0.39         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       17.79         5.85        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-60-2696 
        1.02         0.99         0.99         1.45         1.32         3.58 
TCGA-60-2697 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       12.23        37.94        21.70        49.48        55.40         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       26.07        24.10         1.22        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
       21.07         1.02         0.92         0.99        25.02         0.99 
TCGA-66-2765 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       19.00        12.03        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-6844 
        4.01        49.05         2.73         6.64        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7335 TCGA-77-7338 TCGA-77-8130 
       23.28        11.18        89.95        70.09         0.16        82.92 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       12.59        39.09       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
        6.97        54.41        35.90         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8052 
        0.33         1.61         1.15         1.25         0.85         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-92-7340 
        1.41         0.46         1.18         1.35         1.55         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.27         2.86         0.16        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78        13.58         7.33        10.13 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.03               0.10 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            173.79             141.34 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             17.69              13.12 
[1] "0.0 - 173.8 (17.7)" "0.1 - 141.3 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     13   72
  12P GAIN WILD-TYPE   67  155
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               13                 67
  MALE                 72                155
D23V4, continuous
D23V5, multiclass
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1               12                 58
  T2               60                127
  T3                7                 25
  T4                6                 12
D23V7, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0               50                141
  N1               25                 59
  N2                9                 17
  N3                1                  4
D23V8, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0               77                194
  M1                1                  3
  MX                5                 21
D23V9, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  I                 40                116
  II                25                 56
  III               18                 44
  IV                 1                  3
D23V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      4   81
  12P GAIN WILD-TYPE    7  215
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 4                  7
  YES               81                215
D23V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     11   74
  12P GAIN WILD-TYPE   18  204
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                11                 18
  YES               74                204

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    24  12
  12Q GAIN WILD-TYPE 148 106
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                36                254 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                12                106 
$`12Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-21-1072 TCGA-22-4591 TCGA-22-4604 
        4.80        11.34        24.92        99.16        20.45        13.12 
TCGA-22-5471 TCGA-22-5473 TCGA-33-6737 TCGA-34-2596 TCGA-34-2605 TCGA-34-5231 
       31.69        63.52        19.76         2.63        28.96        50.24 
TCGA-37-5819 TCGA-39-5019 TCGA-39-5034 TCGA-39-5035 TCGA-46-6025 TCGA-56-7582 
        3.39        44.71        36.39        15.58         0.95         0.85 
TCGA-60-2695 TCGA-60-2698 TCGA-60-2706 TCGA-60-2708 TCGA-60-2725 TCGA-66-2754 
       15.55        10.22        82.19        68.45        23.64         2.01 
TCGA-66-2756 TCGA-66-2766 TCGA-66-2767 TCGA-66-2781 TCGA-66-2794 TCGA-77-6842 
        0.99         1.02         2.01         3.98        54.08        29.56 
TCGA-77-7140 TCGA-77-7465 TCGA-77-8148 TCGA-77-8154 TCGA-85-8049 TCGA-90-7769 
       20.78        15.75         9.63        35.90         1.97         0.59 

$`12Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 
       90.51         3.02        27.16       115.59        46.88        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
        1.74        14.10        27.02        48.82        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        34.75        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
        9.53        11.77        64.90        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       10.98        26.99        61.61        31.50        32.84        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        47.80        74.07        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 
       60.76         1.71        24.33         1.94        27.35        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        0.79        17.88        18.28        18.08        13.12        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.84         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        6.35         9.96         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79         5.85         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 
        1.32         3.58        12.23        96.82        37.94        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       22.78         1.22        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         1.02         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
       25.02         0.99         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       19.00         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        10.06         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        2.73         6.64        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       89.95         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       46.78        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        2.93         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.59               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             99.16             173.79 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            15.665             14.085 
[1] "0.6 - 99.2 (15.7)"  "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      5   33
  12Q GAIN WILD-TYPE   75  194
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                5                 75
  MALE                 33                194
D24V4, continuous
D24V5, multiclass
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                4                 66
  T2               25                162
  T3                5                 27
  T4                4                 14
D24V7, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0               19                172
  N1               12                 72
  N2                6                 20
  N3                1                  4
D24V8, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0               36                235
  M1                1                  3
  MX                1                 25
D24V9, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  I                 15                141
  II                11                 70
  III               11                 51
  IV                 1                  3
D24V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      1   37
  12Q GAIN WILD-TYPE   10  259
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 1                 10
  YES               37                259
D24V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      6   32
  12Q GAIN WILD-TYPE   23  246
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 6                 23
  YES               32                246

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED     3   3
  13Q GAIN WILD-TYPE 169 115
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                284 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 3                115 
$`13Q GAIN MUTATED`
TCGA-18-3412 TCGA-21-1079 TCGA-21-1081 TCGA-39-5035 TCGA-56-7223 TCGA-85-7696 
       11.34        31.69         9.30        15.58         0.99         0.59 

$`13Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 
        1.71        24.33         1.94        27.35        36.39        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        0.79        17.88        18.28        18.08        13.12        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.84         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.32         0.85        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        2.73         6.64        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
      106.95         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 
        0.33         0.36         0.79         1.12         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        1.41         0.46         1.18         1.35         1.55         2.93 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.59               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             31.69             173.79 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             10.32              15.24 
[1] "0.6 - 31.7 (10.3)"  "0.0 - 173.8 (15.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "2.6"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1    5
  13Q GAIN WILD-TYPE   79  222
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                1                 79
  MALE                  5                222
D25V4, continuous
D25V5, multiclass
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                2                 68
  T2                2                185
  T3                2                 30
  T4                0                 18
D25V7, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                4                187
  N1                2                 82
  N2                0                 26
  N3                0                  5
D25V8, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0                5                266
  M1                0                  4
  MX                1                 25
D25V9, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  I                  3                153
  II                 1                 80
  III                2                 60
  IV                 0                  4
D25V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      0    6
  13Q GAIN WILD-TYPE   11  290
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 0                 11
  YES                6                290
D25V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      0    6
  13Q GAIN WILD-TYPE   29  272
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 0                 29
  YES                6                272

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    18  10
  14Q GAIN WILD-TYPE 154 108
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                28                262 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                10                108 
$`14Q GAIN MUTATED`
TCGA-18-3415 TCGA-18-3421 TCGA-21-1079 TCGA-22-4591 TCGA-22-4595 TCGA-33-4532 
       59.51        43.76        31.69        20.45        24.13        82.98 
TCGA-33-4533 TCGA-33-4566 TCGA-33-4589 TCGA-39-5029 TCGA-39-5031 TCGA-43-6143 
      114.05       173.79        10.98        24.33        27.35         7.00 
TCGA-51-4081 TCGA-52-7811 TCGA-56-1622 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
        2.07         8.75        28.93        82.19        21.70        68.45 
TCGA-60-2722 TCGA-66-2756 TCGA-66-2763 TCGA-66-2788 TCGA-66-2792 TCGA-77-6845 
       24.10         0.99         0.99        22.98        30.02        23.28 
TCGA-77-8139 TCGA-77-8143 TCGA-85-6561 TCGA-92-7340 
      104.09        26.40         0.79         2.70 

$`14Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       99.16        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       97.94        43.10       103.53       141.34        14.07        54.44 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.71         1.94        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
        0.95         0.59         0.39         0.39        17.79         5.85 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       27.45         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
        0.99         1.45         1.32         0.85        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 
       12.23        10.22        96.82        37.94        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 
       12.00        24.95         1.94        25.97        40.01         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 
        2.73         6.64        29.56        73.08        75.09        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        0.16        46.78        15.75        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 
       53.92        39.09        17.69        11.54        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6798 
        9.63        54.41        35.90         0.33         0.36         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7341 TCGA-92-8063 
        1.35         1.55         2.93         0.59         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        58.42 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.79               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            173.79             141.34 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             24.23              13.12 
[1] "0.8 - 173.8 (24.2)" "0.0 - 141.3 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      6   25
  14Q GAIN WILD-TYPE   74  202
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE                6                 74
  MALE                 25                202
D26V4, continuous
D26V5, multiclass
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1                5                 65
  T2               19                168
  T3                6                 26
  T4                1                 17
D26V7, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               20                171
  N1                7                 77
  N2                4                 22
  N3                0                  5
D26V8, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               29                242
  M1                0                  4
  MX                1                 25
D26V9, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  I                 15                141
  II                 9                 72
  III                7                 55
  IV                 0                  4
D26V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      1   30
  14Q GAIN WILD-TYPE   10  266
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 1                 10
  YES               30                266
D26V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      5   26
  14Q GAIN WILD-TYPE   24  252
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 5                 24
  YES               26                252

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    14  12
  15Q GAIN WILD-TYPE 158 106
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                26                264 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                106 
$`15Q GAIN MUTATED`
TCGA-18-3421 TCGA-18-4083 TCGA-21-1077 TCGA-21-1079 TCGA-22-4605 TCGA-33-4538 
       43.76         6.15        34.78        31.69        32.02        97.94 
TCGA-33-4566 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5240 
      173.79         2.63        28.96        31.23        50.24         7.73 
TCGA-39-5037 TCGA-43-3394 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2706 
        0.79        11.57         0.85        15.55         3.58        82.19 
TCGA-60-2710 TCGA-60-2711 TCGA-77-7140 TCGA-77-7465 TCGA-77-8150 TCGA-85-7844 
       55.40        29.19        20.78        15.75        54.41         1.25 
TCGA-85-8070 TCGA-92-7341 
        1.41         3.48 

$`15Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       99.16        70.13        60.89        15.55       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       82.98       114.05        43.10       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        19.76        26.99        61.61        31.50 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       32.84        51.78        32.68         9.04        10.82        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 
       27.35        36.39        15.58        35.64        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       18.08        13.12        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-60-2697 TCGA-60-2698 
        0.43         0.99         1.45         1.32        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 
       96.82        37.94        21.70        68.45        49.48         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
       54.08         4.01        49.05         2.73         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 
       73.08        75.09        23.28        11.18        89.95         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 
       42.25        70.09       106.95         0.16        46.78        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 
       11.54        26.40        27.39         6.97         9.63        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.15         0.85         1.97         0.53 
TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.46         1.18         1.35         1.55         2.93         0.59 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.79               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            173.79             141.34 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             24.87              14.07 
[1] "0.8 - 173.8 (24.9)" "0.0 - 141.3 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      7   20
  15Q GAIN WILD-TYPE   73  207
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                7                 73
  MALE                 20                207
D27V4, continuous
D27V5, multiclass
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                4                 66
  T2               20                167
  T3                2                 30
  T4                1                 17
D27V7, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0               14                177
  N1               12                 72
  N2                1                 25
  N3                0                  5
D27V8, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               26                245
  M1                0                  4
  MX                1                 25
D27V9, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  I                 12                144
  II                11                 70
  III                4                 58
  IV                 0                  4
D27V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   26
  15Q GAIN WILD-TYPE   10  270
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 10
  YES               26                270
D27V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      3   24
  15Q GAIN WILD-TYPE   26  254
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 3                 26
  YES               24                254

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED     9   5
  16P GAIN WILD-TYPE 163 113
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                14                276 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 5                113 
$`16P GAIN MUTATED`
TCGA-18-3412 TCGA-21-1081 TCGA-21-5783 TCGA-34-5240 TCGA-34-7107 TCGA-37-4135 
       11.34         9.30        88.08         7.73         1.08         6.81 
TCGA-37-5819 TCGA-56-1622 TCGA-56-6545 TCGA-66-2768 TCGA-77-7465 TCGA-85-6560 
        3.39        28.93         2.04         2.01        15.75         0.36 
TCGA-85-7843 TCGA-92-7341 
        1.15         3.48 

$`16P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
       31.69       122.43       119.80         8.78        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       10.82        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       18.08        13.12        11.57        18.84         8.48        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        1.58        66.51         6.64         6.35         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.59         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        8.75        27.45         0.10         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
        0.99         1.45         1.32         0.85        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         2.73         6.64        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 
       70.09       106.95         0.16        46.78        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.33         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        0.03         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.46         1.18         1.35         1.55         2.93         0.59 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.36               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             88.08             173.79 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             5.145             16.090 
[1] "0.4 - 88.1 (5.1)"   "0.0 - 173.8 (16.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      2   12
  16P GAIN WILD-TYPE   78  215
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                2                 78
  MALE                 12                215
D28V4, continuous
D28V5, multiclass
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                0                 70
  T2               14                173
  T3                0                 32
  T4                0                 18
D28V7, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0                7                184
  N1                6                 78
  N2                1                 25
  N3                0                  5
D28V8, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               13                258
  M1                0                  4
  MX                1                 25
D28V9, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  I                  5                151
  II                 6                 75
  III                3                 59
  IV                 0                  4
D28V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      0   14
  16P GAIN WILD-TYPE   11  282
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 0                 11
  YES               14                282
D28V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      0   14
  16P GAIN WILD-TYPE   29  264
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 0                 29
  YES               14                264

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    11   6
  16Q GAIN WILD-TYPE 161 112
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                17                273 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                112 
$`16Q GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-21-5783 TCGA-21-5786 TCGA-34-7107 TCGA-37-4133 
       11.34        13.02        88.08        21.57         1.08         7.82 
TCGA-37-4135 TCGA-56-1622 TCGA-56-6545 TCGA-60-2708 TCGA-60-2722 TCGA-60-2726 
        6.81        28.93         2.04        68.45        24.10        11.77 
TCGA-66-2768 TCGA-77-7465 TCGA-85-6560 TCGA-85-7843 TCGA-92-7341 
        2.01        15.75         0.36         1.15         3.48 

$`16Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
      122.43         9.30       119.80         8.78        31.63        29.85 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4141 
        0.43         0.39         6.54         8.09         7.46         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       18.08        13.12        11.57        18.84         8.48        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        1.58        66.51         6.64         6.35         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.59         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        8.75        27.45         0.10         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
        0.99         1.45         1.32         0.85        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       35.34        38.83        30.61         3.16        26.07        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
        1.22        23.64        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       46.78        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 
        9.63        54.41        35.90         0.33         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 
        0.59         0.33         1.61         0.03         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 
        1.55         2.93         0.59         2.70         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        2.27         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.36               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             88.08             173.79 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             11.34              15.55 
[1] "0.4 - 88.1 (11.3)"  "0.0 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
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        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
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        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
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        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
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        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
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        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
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        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      2   16
  16Q GAIN WILD-TYPE   78  211
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                2                 78
  MALE                 16                211
D29V4, continuous
D29V5, multiclass
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                0                 70
  T2               16                171
  T3                0                 32
  T4                2                 16
D29V7, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0                9                182
  N1                9                 75
  N2                0                 26
  N3                0                  5
D29V8, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               16                255
  M1                1                  3
  MX                1                 25
D29V9, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  I                  6                150
  II                 8                 73
  III                3                 59
  IV                 1                  3
D29V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      0   18
  16Q GAIN WILD-TYPE   11  278
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 0                 11
  YES               18                278
D29V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      2   16
  16Q GAIN WILD-TYPE   27  262
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 2                 27
  YES               16                262

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED     5   1
  17P GAIN WILD-TYPE 167 117
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 6                284 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 1                117 
$`17P GAIN MUTATED`
TCGA-21-1072 TCGA-34-2596 TCGA-66-2756 TCGA-66-2792 TCGA-77-7465 TCGA-90-7769 
       99.16         2.63         0.99        30.02        15.75         0.59 

$`17P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      115.59        46.88        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.08        29.85        21.57        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        19.76        26.99        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98         5.03        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         2.73         6.64        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 
       70.09       106.95         0.16        46.78        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        2.93         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.59               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             99.16             173.79 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             9.190             14.765 
[1] "0.6 - 99.2 (9.2)"   "0.0 - 173.8 (14.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "2.4"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0    7
  17P GAIN WILD-TYPE   80  220
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                0                 80
  MALE                  7                220
D30V4, continuous
[1] "Remove cluster labels:" "17P GAIN MUTATED"      
clus
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 1                 51 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5783         TCGA-21-5787         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-37-4129         TCGA-37-4130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-43-2576         TCGA-56-7222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2698         TCGA-60-2712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2725         TCGA-60-2726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-70-6722         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-7340         TCGA-92-7341         TCGA-98-7454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
D30V5, multiclass
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                0                 70
  T2                5                182
  T3                1                 31
  T4                1                 17
D30V7, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                3                188
  N1                4                 80
  N2                0                 26
  N3                0                  5
D30V8, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0                6                265
  M1                0                  4
  MX                1                 25
D30V9, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  I                  1                155
  II                 5                 76
  III                1                 61
  IV                 0                  4
D30V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0    7
  17P GAIN WILD-TYPE   11  289
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 0                 11
  YES                7                289
D30V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0    7
  17P GAIN WILD-TYPE   29  271
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 0                 29
  YES                7                271

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    21  11
  17Q GAIN WILD-TYPE 151 107
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                32                258 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                11                107 
$`17Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 TCGA-22-4599 TCGA-22-4613 
        4.80        46.88        70.13        34.78        38.17        11.77 
TCGA-22-5471 TCGA-33-4532 TCGA-33-4582 TCGA-34-2596 TCGA-34-5231 TCGA-34-5240 
       31.69        82.98       103.53         2.63        50.24         7.73 
TCGA-37-3792 TCGA-37-4133 TCGA-39-5016 TCGA-39-5019 TCGA-39-5037 TCGA-46-6025 
        0.39         7.82        74.07        44.71         0.79         0.95 
TCGA-46-6026 TCGA-56-1622 TCGA-66-2742 TCGA-66-2756 TCGA-66-2758 TCGA-66-2787 
        0.59        28.93        21.07         0.99        20.98        40.01 
TCGA-66-2792 TCGA-66-2793 TCGA-68-7755 TCGA-77-6845 TCGA-77-7138 TCGA-77-7465 
       30.02        10.06         2.73        23.28        11.18        15.75 
TCGA-85-6560 TCGA-90-7769 
        0.36         0.59 

$`17Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       99.16        60.89        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33        24.13         0.56        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       19.30         9.53        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        56.32        16.60       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       173.79       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       19.76        26.99        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       31.23        51.78        32.68         9.04        10.82        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.54         8.09         7.46         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       47.80        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        9.96         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10         2.01         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        1.94        25.97        22.98         4.04        22.98         5.03 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 
       54.08         4.01        49.05         6.64        29.56        73.08 
TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       75.09        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
      106.95         0.16        46.78        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-92-7340 
        0.46         1.18         1.35         1.55         2.93         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.36               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            103.53             173.79 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            18.365             14.350 
[1] "0.4 - 103.5 (18.4)" "0.0 - 173.8 (14.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      4   29
  17Q GAIN WILD-TYPE   76  198
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                4                 76
  MALE                 29                198
D31V4, continuous
D31V5, multiclass
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1                6                 64
  T2               22                165
  T3                2                 30
  T4                3                 15
D31V7, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0               17                174
  N1               16                 68
  N2                0                 26
  N3                0                  5
D31V8, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0               31                240
  M1                1                  3
  MX                1                 25
D31V9, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  I                 13                143
  II                14                 67
  III                5                 57
  IV                 1                  3
D31V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      2   31
  17Q GAIN WILD-TYPE    9  265
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 2                  9
  YES               31                265
D31V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      2   31
  17Q GAIN WILD-TYPE   27  247
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 2                 27
  YES               31                247

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    30  18
  18P GAIN WILD-TYPE 142 100
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                48                242 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                100 
$`18P GAIN MUTATED`
TCGA-18-3411 TCGA-18-3416 TCGA-18-4083 TCGA-21-1075 TCGA-21-1079 TCGA-21-5783 
       46.52        28.34         6.15        70.13        31.69        88.08 
TCGA-21-5786 TCGA-22-0944 TCGA-22-4595 TCGA-22-4604 TCGA-22-5491 TCGA-33-4532 
       21.57         7.33        24.13        13.12        56.32        82.98 
TCGA-33-4566 TCGA-33-4586 TCGA-34-2596 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 
      173.79        14.07         2.63        50.24         9.04        10.82 
TCGA-34-5240 TCGA-39-5021 TCGA-39-5027 TCGA-39-5031 TCGA-43-2576 TCGA-43-5670 
        7.73        68.58        60.76        27.35        18.28        18.05 
TCGA-43-6143 TCGA-43-7658 TCGA-60-2698 TCGA-60-2711 TCGA-60-2722 TCGA-60-2723 
        7.00        66.51        10.22        29.19        24.10        22.78 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2767 TCGA-66-2770 TCGA-66-2783 TCGA-66-2787 
       20.98        25.02         2.01        23.01        24.95        40.01 
TCGA-66-2794 TCGA-68-7755 TCGA-77-6845 TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 
       54.08         2.73        23.28        70.09        46.78        15.75 
TCGA-77-8128 TCGA-77-8143 TCGA-77-8156 TCGA-85-8049 TCGA-85-8071 TCGA-90-7769 
       37.81        26.40         0.33         1.97         0.46         0.59 

$`18P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        59.51        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.55       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 
        8.78        31.63        29.85        10.82        19.99        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        48.33         0.56        38.17        34.75 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
       79.20        11.74        18.84        30.08        62.86        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 
      114.05        97.94        43.10       103.53       141.34        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76        26.99        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5241 TCGA-34-5927 
       32.84        31.23        51.78        32.68        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        3.39        47.80        74.07        44.71        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
        0.79        17.88        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        8.48         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        1.58         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       68.45        49.48        55.40         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
       35.34        38.83        30.61         3.16        26.07         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
        0.99         2.01         1.02         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        1.94        25.97        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-77-6842 
       30.02        10.06         4.01        49.05         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       42.25       106.95         0.16        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 
       39.09        17.69       104.09        11.54        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        9.63        54.41        35.90         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.85         0.53         1.41         1.18         1.35         1.55 
TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        2.93         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.33               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            173.79             141.34 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            23.690             12.195 
[1] "0.3 - 173.8 (23.7)" "0.0 - 141.3 (12.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      9   41
  18P GAIN WILD-TYPE   71  186
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE                9                 71
  MALE                 41                186
D32V4, continuous
D32V5, multiclass
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                6                 64
  T2               36                151
  T3                5                 27
  T4                3                 15
D32V7, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               26                165
  N1               13                 71
  N2                9                 17
  N3                2                  3
D32V8, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0               48                223
  M1                0                  4
  MX                1                 25
D32V9, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  I                 21                135
  II                14                 67
  III               15                 47
  IV                 0                  4
D32V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      2   48
  18P GAIN WILD-TYPE    9  248
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 2                  9
  YES               48                248
D32V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      6   44
  18P GAIN WILD-TYPE   23  234
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 6                 23
  YES               44                234

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    21  14
  18Q GAIN WILD-TYPE 151 104
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                35                255 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                104 
$`18Q GAIN MUTATED`
TCGA-18-3411 TCGA-18-4083 TCGA-21-1075 TCGA-21-5783 TCGA-22-1012 TCGA-22-4595 
       46.52         6.15        70.13        88.08        14.10        24.13 
TCGA-22-4604 TCGA-22-5481 TCGA-22-5491 TCGA-33-4532 TCGA-33-4586 TCGA-34-2596 
       13.12        79.20        56.32        82.98        14.07         2.63 
TCGA-34-5236 TCGA-34-5239 TCGA-39-5021 TCGA-39-5031 TCGA-43-2576 TCGA-43-3920 
        9.04        10.82        68.58        27.35        18.28        18.84 
TCGA-43-6143 TCGA-43-7658 TCGA-43-8115 TCGA-60-2695 TCGA-60-2711 TCGA-60-2722 
        7.00        66.51         6.64        15.55        29.19        24.10 
TCGA-60-2723 TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 TCGA-66-2787 TCGA-66-2793 
       22.78        20.98        25.02        23.01        40.01        10.06 
TCGA-66-2794 TCGA-68-7755 TCGA-77-7463 TCGA-77-7465 TCGA-77-8143 
       54.08         2.73        46.78        15.75        26.40 

$`18Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
        9.30       119.80         8.78        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
        1.74        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        38.17        34.75        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
        0.79        54.28        71.34        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53       141.34        54.44        10.98        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        74.07        44.71        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
        0.79        17.88        18.08        13.12        11.57         8.48 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        1.58         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2696 TCGA-60-2697 
        0.99         1.45         1.32         0.85         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        55.40         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 
       38.83        30.61         3.16        26.07         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 
        1.02         2.01         0.92         0.99         0.99         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
        2.01         1.02         2.01         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        25.97        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-77-6842 
        5.03        30.02         4.01        49.05         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8128 
        0.49        42.25        70.09       106.95         0.16        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       11.54        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        2.27         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              2.63               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             88.08             173.79 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             23.01              12.23 
[1] "2.6 - 88.1 (23.0)"  "0.0 - 173.8 (12.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     11   25
  18Q GAIN WILD-TYPE   69  202
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE               11                 69
  MALE                 25                202
D33V4, continuous
D33V5, multiclass
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                5                 65
  T2               26                161
  T3                2                 30
  T4                3                 15
D33V7, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0               19                172
  N1               10                 74
  N2                7                 19
  N3                0                  5
D33V8, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0               34                237
  M1                0                  4
  MX                1                 25
D33V9, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  I                 17                139
  II                10                 71
  III                9                 53
  IV                 0                  4
D33V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   34
  18Q GAIN WILD-TYPE    9  262
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 2                  9
  YES               34                262
D33V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      5   31
  18Q GAIN WILD-TYPE   24  247
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 5                 24
  YES               31                247

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    17  13
  19P GAIN WILD-TYPE 155 105
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                30                260 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                13                105 
$`19P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-22-4595 TCGA-22-5474 TCGA-22-5483 
        4.47         4.80        46.52        24.13        14.60        18.84 
TCGA-22-5489 TCGA-33-4566 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 
       62.86       173.79        14.07         2.63        61.61        50.24 
TCGA-34-5240 TCGA-34-7107 TCGA-39-5016 TCGA-39-5034 TCGA-39-5035 TCGA-43-6143 
        7.73         1.08        74.07        36.39        15.58         7.00 
TCGA-52-7809 TCGA-60-2695 TCGA-60-2708 TCGA-66-2777 TCGA-66-2794 TCGA-77-6843 
        5.85        15.55        68.45         2.01        54.08        73.08 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7465 TCGA-77-8148 TCGA-85-6798 TCGA-90-7769 
       89.95         0.49        15.75         9.63         1.12         0.59 

$`19P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       35.08        48.33         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
       97.94        43.10       103.53       141.34        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       19.76        26.99        31.50        28.96        32.84        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04        10.82        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        5.52         4.96         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33         1.94        27.35        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        0.95         0.59         0.39         0.39         2.07        17.79 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        10.06         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        2.73         6.64        29.56        75.09        23.28        11.18 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       20.78        42.25        70.09       106.95         0.16        46.78 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 
      104.09        11.54        26.40        27.39         6.97        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
       35.90         0.33         0.36         0.79         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        2.93         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.49               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            173.79             141.34 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            15.565             14.085 
[1] "0.5 - 173.8 (15.6)" "0.0 - 141.3 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      7   24
  19P GAIN WILD-TYPE   73  203
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                7                 73
  MALE                 24                203
D34V4, continuous
D34V5, multiclass
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                6                 64
  T2               19                168
  T3                5                 27
  T4                1                 17
D34V7, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0               16                175
  N1               11                 73
  N2                4                 22
  N3                0                  5
D34V8, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0               29                242
  M1                0                  4
  MX                1                 25
D34V9, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  I                 13                143
  II                11                 70
  III                7                 55
  IV                 0                  4
D34V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      2   29
  19P GAIN WILD-TYPE    9  267
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 2                  9
  YES               29                267
D34V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      3   28
  19P GAIN WILD-TYPE   26  250
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 3                 26
  YES               28                250

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    25  18
  19Q GAIN WILD-TYPE 147 100
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                43                247 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                18                100 
$`19Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3411 TCGA-18-3417 TCGA-21-1081 TCGA-21-5787 TCGA-22-4595 
        4.80        46.52        24.92         9.30        10.82        24.13 
TCGA-22-4599 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-33-4566 TCGA-33-4586 
       38.17        18.84        30.08        62.86       173.79        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5240 TCGA-34-5928 
       19.76         2.63        61.61        50.24         7.73         5.52 
TCGA-34-7107 TCGA-37-5819 TCGA-39-5016 TCGA-39-5034 TCGA-39-5035 TCGA-43-3920 
        1.08         3.39        74.07        36.39        15.58        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-52-7809 TCGA-56-6546 TCGA-60-2695 
        8.48        18.05         7.00         5.85         1.02        15.55 
TCGA-60-2708 TCGA-60-2723 TCGA-66-2742 TCGA-66-2777 TCGA-77-6843 TCGA-77-7141 
       68.45        22.78        21.07         2.01        73.08         0.49 
TCGA-77-7335 TCGA-77-7465 TCGA-77-8130 TCGA-77-8138 TCGA-77-8148 TCGA-85-7699 
       70.09        15.75        82.92        17.69         9.63         0.03 
TCGA-90-7769 
        0.59 

$`19Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        79.46        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5491 
        0.79        54.28        71.34        79.20        11.74        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2604 TCGA-34-2605 
      141.34        54.44        10.98        26.99        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        31.23        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       14.07        22.95         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33         1.94        27.35        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-6647 
       17.88        18.28        18.08        13.12        11.57         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39         2.07        17.79         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        0.10         2.04         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        1.32         0.85         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        82.19        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10         2.01         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 
       49.05         2.73         6.64        29.56        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 
       11.18        89.95        20.78        42.25       106.95         0.16 
TCGA-77-7463 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8139 
       46.78        37.81        12.59        53.92        39.09       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 
       11.54        26.40        27.39         6.97        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        1.41         0.46         1.18         1.35         1.55         2.93 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        0.16        39.88        58.42         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.10 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            173.79             141.34 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             17.69              13.58 
[1] "0.0 - 173.8 (17.7)" "0.1 - 141.3 (13.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     12   33
  19Q GAIN WILD-TYPE   68  194
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               12                 68
  MALE                 33                194
D35V4, continuous
D35V5, multiclass
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                9                 61
  T2               30                157
  T3                4                 28
  T4                2                 16
D35V7, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0               23                168
  N1               15                 69
  N2                7                 19
  N3                0                  5
D35V8, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0               40                231
  M1                2                  2
  MX                2                 24
D35V9, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  I                 17                139
  II                15                 66
  III               10                 52
  IV                 2                  2
D35V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      2   43
  19Q GAIN WILD-TYPE    9  253
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 2                  9
  YES               43                253
D35V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      6   39
  19Q GAIN WILD-TYPE   23  239
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 6                 23
  YES               39                239

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    44  39
  20P GAIN WILD-TYPE 128  79
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                83                207 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                39                 79 
$`20P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-21-1080 TCGA-21-1081 
       79.46         4.80        13.02        24.92       122.43         9.30 
TCGA-21-1082 TCGA-21-5783 TCGA-21-5786 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
      119.80        88.08        21.57        27.02        20.45        48.33 
TCGA-22-4595 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-5477 TCGA-22-5482 
       24.13        13.12        32.02         9.53        44.22        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4587 
       18.84        30.08        56.32        82.98        97.94        54.44 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 
       26.99         2.63        61.61        50.24        10.82         7.73 
TCGA-34-7107 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5029 TCGA-39-5036 
        1.08         3.39        74.07        68.58        24.33        35.64 
TCGA-39-5037 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 
        0.79        18.08        18.84        18.05         7.00        66.51 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 
        9.96         0.59         0.39         2.07        28.93         2.04 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-60-2703 TCGA-60-2704 
        0.43         0.99         1.32         0.85        96.82        37.94 
TCGA-60-2708 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2742 TCGA-66-2756 
       68.45        24.10        22.78        11.77        21.07         0.99 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
        7.07        23.01         3.02        12.03         3.98        24.95 
TCGA-66-2787 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 TCGA-77-6842 TCGA-77-6844 
       40.01        30.02        10.06        49.05        29.56        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-8143 TCGA-85-7698 
       23.28        11.18        89.95        20.78        26.40         1.61 
TCGA-85-8070 TCGA-90-7769 TCGA-92-7341 TCGA-98-8021 TCGA-98-8022 
        1.41         0.59         3.48        13.58         7.33 

$`20P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.16       115.59        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1083 TCGA-21-5782 
       60.89        34.78        15.55        31.69         8.78        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 
       64.21         1.74        14.10        48.82        35.08         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60         0.79        54.28        71.34        79.20 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       62.86        16.60       114.05        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2604 TCGA-34-2605 
      141.34        14.07        10.98        19.76        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 
       32.84        31.23        51.78        32.68         9.04        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       22.95         5.52         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       47.80        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 TCGA-43-2576 
        1.94        27.35        36.39        15.58        17.88        18.28 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       13.12        11.57         8.48         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 
        3.78         6.97         1.58         6.64         6.35         0.95 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
        0.39        17.79         5.85         8.75        27.45         0.10 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7579 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.02         0.99         1.45        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        82.19        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
        3.16        26.07         1.22        23.64        16.96        43.10 
TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
        2.01         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 TCGA-66-2785 
        2.01        19.00         2.01        19.00        12.00         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 
       25.97        22.98         4.04        22.98         5.03        54.08 
TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-7141 TCGA-77-7142 
        4.01         2.73         6.64        73.08         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       70.09       106.95         0.16        46.78        15.75        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       11.54        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-92-7340 
        0.46         1.18         1.35         1.55         2.93         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.27         2.86         0.16        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8023 
       58.42         3.78        10.13 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.39               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            122.43             173.79 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             20.78              12.59 
[1] "0.4 - 122.4 (20.8)" "0.0 - 173.8 (12.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     15   71
  20P GAIN WILD-TYPE   65  156
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               15                 65
  MALE                 71                156
D36V4, continuous
D36V5, multiclass
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               19                 51
  T2               52                135
  T3                9                 23
  T4                6                 12
D36V7, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0               50                141
  N1               27                 57
  N2                8                 18
  N3                1                  4
D36V8, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               75                196
  M1                3                  1
  MX                5                 21
D36V9, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  I                 40                116
  II                22                 59
  III               19                 43
  IV                 3                  1
D36V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      5   81
  20P GAIN WILD-TYPE    6  215
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 5                  6
  YES               81                215
D36V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      9   77
  20P GAIN WILD-TYPE   20  201
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 9                 20
  YES               77                201

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    44  29
  20Q GAIN WILD-TYPE 128  89
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                73                217 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                29                 89 
$`20Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-21-1079 TCGA-21-1081 
       79.46         4.80        13.02        24.92        31.69         9.30 
TCGA-21-1082 TCGA-21-5786 TCGA-21-5787 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
      119.80        21.57        10.82        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4605 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 
       35.08        24.13        32.02        30.08        56.32        82.98 
TCGA-33-4538 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-5231 TCGA-34-5240 
       97.94        54.44        26.99         2.63        50.24         7.73 
TCGA-37-3792 TCGA-37-4130 TCGA-37-5819 TCGA-39-5011 TCGA-39-5029 TCGA-39-5036 
        0.39         8.09         3.39        47.80        24.33        35.64 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-7656 TCGA-43-7658 
       18.08        18.84        18.05         7.00         6.97        66.51 
TCGA-46-3768 TCGA-46-6026 TCGA-52-7809 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 
        9.96         0.59         5.85        28.93         2.04         1.02 
TCGA-56-7223 TCGA-56-7582 TCGA-60-2695 TCGA-60-2703 TCGA-60-2706 TCGA-60-2708 
        0.99         0.85        15.55        96.82        82.19        68.45 
TCGA-60-2711 TCGA-60-2722 TCGA-60-2726 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 
       29.19        24.10        11.77        21.07         0.99         0.99 
TCGA-66-2757 TCGA-66-2769 TCGA-66-2770 TCGA-66-2781 TCGA-66-2785 TCGA-66-2787 
        0.99         7.07        23.01         3.98         1.94        40.01 
TCGA-66-2793 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7337 
       10.06        23.28        11.18        89.95        20.78       106.95 
TCGA-77-7465 TCGA-77-8143 TCGA-77-8145 TCGA-85-6560 TCGA-85-8070 TCGA-90-7769 
       15.75        26.40         6.97         0.36         1.41         0.59 
TCGA-92-7341 
        3.48 

$`20Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.16       115.59        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 
       60.89        34.78        15.55       122.43         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       88.08        29.85        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       64.21         1.74        48.82        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        13.12        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5492 
       71.34        79.20        11.74        18.84        62.86        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       10.98        19.76        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       31.23        51.78        32.68         9.04        10.82        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        6.54         7.46         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        36.39        15.58         0.79        17.88 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       18.28        13.12        11.57         8.48         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 
        5.42         3.78         1.58         6.64         6.35         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 
        0.39         0.39         2.07        17.79         8.75        27.45 
TCGA-56-5897 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-60-2696 
        0.10         0.99         0.43         1.45         1.32         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       12.23        10.22        37.94        21.70        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
        3.16        26.07        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 
       43.10         2.01         1.02         2.01         0.92        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       19.00         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       24.95        25.97        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       29.56        73.08        75.09         0.49        42.25        70.09 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
        0.16        46.78        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8148 
       39.09        17.69       104.09        11.54        27.39         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41        35.90         0.33         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        1.97         0.53         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.93         2.70         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        0.16        39.88        58.42         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.36               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            119.80             173.79 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             18.08              13.58 
[1] "0.4 - 119.8 (18.1)" "0.0 - 173.8 (13.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     14   60
  20Q GAIN WILD-TYPE   66  167
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               14                 66
  MALE                 60                167
D37V4, continuous
D37V5, multiclass
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               15                 55
  T2               47                140
  T3                7                 25
  T4                5                 13
D37V7, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0               44                147
  N1               22                 62
  N2                8                 18
  N3                0                  5
D37V8, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               63                208
  M1                3                  1
  MX                7                 19
D37V9, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  I                 35                121
  II                17                 64
  III               17                 45
  IV                 3                  1
D37V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      5   69
  20Q GAIN WILD-TYPE    6  227
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 5                  6
  YES               69                227
D37V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      6   68
  20Q GAIN WILD-TYPE   23  210
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 6                 23
  YES               68                210

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    11   6
  21Q GAIN WILD-TYPE 161 112
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                17                273 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 6                112 
$`21Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1081 TCGA-22-4595 TCGA-33-4583 TCGA-33-4587 TCGA-34-2605 
        4.80         9.30        24.13       141.34        54.44        28.96 
TCGA-34-5240 TCGA-43-6143 TCGA-56-7221 TCGA-60-2706 TCGA-60-2714 TCGA-66-2756 
        7.73         7.00         0.99        82.19        16.83         0.99 
TCGA-66-2783 TCGA-77-8130 TCGA-77-8139 TCGA-77-8143 TCGA-92-7340 
       24.95        82.92       104.09        26.40         2.70 

$`21Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        48.33         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      173.79       103.53        14.07        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        2.63        61.61        31.50        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04        10.82        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       18.08        13.12        11.57        18.84         8.48        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 
       27.45        28.93         0.10         2.04         1.02         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
        0.99         1.45         1.32         0.85        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        96.82        37.94        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       46.78        15.75        37.81        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       17.69        11.54        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        1.55         2.93         0.59         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        2.27         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.99               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            141.34             173.79 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             24.13              14.10 
[1] "1.0 - 141.3 (24.1)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      4   14
  21Q GAIN WILD-TYPE   76  213
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                4                 76
  MALE                 14                213
D38V4, continuous
D38V5, multiclass
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                2                 68
  T2               11                176
  T3                3                 29
  T4                2                 16
D38V7, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                9                182
  N1                6                 78
  N2                2                 24
  N3                1                  4
D38V8, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0               14                257
  M1                0                  4
  MX                2                 24
D38V9, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  I                  5                151
  II                 6                 75
  III                6                 56
  IV                 0                  4
D38V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1   17
  21Q GAIN WILD-TYPE   10  279
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 1                 10
  YES               17                279
D38V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      5   13
  21Q GAIN WILD-TYPE   24  265
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 5                 24
  YES               13                265

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    43  26
  22Q GAIN WILD-TYPE 129  92
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                69                221 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                26                 92 
$`22Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 
       81.07        79.46        46.52        11.34        13.02        99.16 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 TCGA-22-4591 TCGA-22-4593 
       70.13        34.78        31.69       119.80        20.45        35.08 
TCGA-22-4595 TCGA-22-4605 TCGA-22-5477 TCGA-22-5481 TCGA-22-5491 TCGA-33-4532 
       24.13        32.02        44.22        79.20        56.32        82.98 
TCGA-33-4586 TCGA-34-2605 TCGA-34-5231 TCGA-34-5240 TCGA-39-5034 TCGA-39-5037 
       14.07        28.96        50.24         7.73        36.39         0.79 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6770 TCGA-43-7657 TCGA-56-1622 
       11.57        18.84        18.05         2.79         1.58        28.93 
TCGA-56-5897 TCGA-56-7221 TCGA-56-7580 TCGA-56-7582 TCGA-60-2703 TCGA-60-2708 
        0.10         0.99         1.32         0.85        96.82        68.45 
TCGA-60-2711 TCGA-60-2714 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
       29.19        16.83        24.10        22.78        23.64        11.77 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2777 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
       20.98         0.99         2.01         3.98        24.95         1.94 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 TCGA-77-6842 TCGA-77-6845 TCGA-77-7139 
       30.02        54.08        49.05        29.56        23.28        89.95 
TCGA-77-7140 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 
       20.78        46.78        15.75        37.81        82.92        53.92 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-85-8052 TCGA-85-8070 TCGA-90-7769 
       11.54        26.40         6.97         0.53         1.41         0.59 
TCGA-92-7341 TCGA-94-7033 TCGA-96-7545 
        3.48         2.86        58.42 

$`22Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
       12.16         4.47         4.80        59.51        28.34        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
        1.61        43.76         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 
       27.16       115.59        46.88        60.89        15.55       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
        9.30         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 
        1.74        14.10        27.02        48.82        48.33         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        34.75        13.12        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
       31.69        64.90        63.52        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
       71.34        11.74        18.84        30.08        62.86        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       31.50        32.84        31.23        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       10.82        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.28        18.08        13.12         8.48         7.00         6.02 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 
       17.79         5.85         8.75        27.45         2.04         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.43         0.99         1.45        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       10.22        37.94        82.19        21.70        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        47.87        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.07         1.22        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.02         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       23.01        19.00         3.02        19.00        12.03        12.00 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-6844 
       10.06         4.01         2.73         6.64        73.08        75.09 
TCGA-77-7138 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       11.18         0.49        42.25        70.09       106.95         0.16 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
       12.59        39.09        17.69       104.09        27.39         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.85         1.97         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 
        2.93         2.70         4.01         5.26         2.27         0.16 
TCGA-96-7544 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88         3.78        13.58         7.33        10.13 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.10               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            119.80             173.79 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              24.1               12.0 
[1] "0.1 - 119.8 (24.1)" "0.0 - 173.8 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     15   57
  22Q GAIN WILD-TYPE   65  170
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               15                 65
  MALE                 57                170
D39V4, continuous
D39V5, multiclass
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1               10                 60
  T2               51                136
  T3                6                 26
  T4                5                 13
D39V7, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0               41                150
  N1               23                 61
  N2                7                 19
  N3                1                  4
D39V8, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0               62                209
  M1                1                  3
  MX                7                 19
D39V9, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  I                 32                124
  II                24                 57
  III               13                 49
  IV                 1                  3
D39V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      3   69
  22Q GAIN WILD-TYPE    8  227
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 3                  8
  YES               69                227
D39V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      6   66
  22Q GAIN WILD-TYPE   23  212
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 6                 23
  YES               66                212

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED     6   3
  XQ GAIN WILD-TYPE 166 115
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9               281 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3               115 
$`XQ GAIN MUTATED`
TCGA-18-3406 TCGA-22-4593 TCGA-22-5483 TCGA-43-5670 TCGA-60-2711 TCGA-60-2719 
       12.16        35.08        18.84        18.05        29.19        30.61 
TCGA-66-2756 TCGA-77-7465 TCGA-92-7341 
        0.99        15.75         3.48 

$`XQ GAIN WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.08        29.85        21.57        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       48.82        20.45        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       54.28        71.34        79.20        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.45         1.32         0.85        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        55.40         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       38.83         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       46.78        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.18         1.35         1.55         2.93         0.59         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.27         2.86         0.16        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78        13.58         7.33        10.13 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.99              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            35.08            173.79 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            18.05             14.10 
[1] "1.0 - 35.1 (18.1)"  "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      2    7
  XQ GAIN WILD-TYPE   78  220
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               2                78
  MALE                 7               220
D40V4, continuous
D40V5, multiclass
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               3                67
  T2               5               182
  T3               0                32
  T4               1                17
D40V7, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0               7               184
  N1               2                82
  N2               0                26
  N3               0                 5
D40V8, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0               8               263
  M1               0                 4
  MX               1                25
D40V9, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  I                 4               152
  II                4                77
  III               1                61
  IV                0                 4
D40V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      0    9
  XQ GAIN WILD-TYPE   11  287
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                0                11
  YES               9               287
D40V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      2    7
  XQ GAIN WILD-TYPE   27  271
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                2                27
  YES               7               271

Clustering(41) Variable = 1p loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    23  18
  1P LOSS WILD-TYPE 149 100
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               41               249 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               18               100 
$`1P LOSS MUTATED`
TCGA-18-3415 TCGA-18-5592 TCGA-21-1075 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 
       59.51         3.02        70.13        21.57        19.99         7.33 
TCGA-22-4599 TCGA-22-4609 TCGA-22-5474 TCGA-22-5477 TCGA-22-5483 TCGA-22-5491 
       38.17         9.53        14.60        44.22        18.84        56.32 
TCGA-33-4583 TCGA-34-2600 TCGA-34-7107 TCGA-37-5819 TCGA-39-5027 TCGA-39-5029 
      141.34        61.61         1.08         3.39        60.76        24.33 
TCGA-39-5034 TCGA-43-3394 TCGA-46-3768 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 
       36.39        11.57         9.96         0.59         2.07        28.93 
TCGA-60-2706 TCGA-66-2737 TCGA-66-2770 TCGA-66-2777 TCGA-66-2791 TCGA-66-2792 
       82.19         2.01        23.01         2.01         5.03        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-77-7139 TCGA-77-7337 
       54.08         4.01        49.05         2.73        89.95       106.95 
TCGA-77-8128 TCGA-77-8133 TCGA-85-7696 TCGA-85-7698 TCGA-96-7544 
       37.81        53.92         0.59         1.61        39.88 

$`1P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5787 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
       10.82        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 
        0.56        34.75        13.12        32.02        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       31.69        64.90        63.52         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 
       79.20        11.74        30.08        62.86        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 
      114.05        97.94        43.10       173.79       103.53        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       54.44        10.98        19.76        26.99         2.63        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         0.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 
       44.71        68.58        55.17        70.03         1.71         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       27.35        15.58        35.64         0.79        17.88        18.28 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       18.08        13.12        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
       66.51         6.64         6.35         0.95         0.39         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 
       17.79         5.85         8.75        27.45         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.85        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2793 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       22.98        10.06         6.64        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        11.18        20.78         0.49        42.25        70.09 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 
        0.16        46.78        15.75        82.92        12.59        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        1.12         0.33         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.55         2.93         0.59         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7545 TCGA-98-7454 
        5.26         2.27         2.86         0.16        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.59              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           141.34            173.79 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            23.01             13.58 
[1] "0.6 - 141.3 (23.0)" "0.0 - 173.8 (13.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      4   42
  1P LOSS WILD-TYPE   76  185
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               4                76
  MALE                42               185
D41V4, continuous
D41V5, multiclass
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1              15                55
  T2              23               164
  T3               5                27
  T4               3                15
D41V7, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0              25               166
  N1              16                68
  N2               4                22
  N3               1                 4
D41V8, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0              45               226
  M1               0                 4
  MX               1                25
D41V9, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  I                20               136
  II               17                64
  III               9                53
  IV                0                 4
D41V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3   43
  1P LOSS WILD-TYPE    8  253
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                3                 8
  YES              43               253
D41V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      4   42
  1P LOSS WILD-TYPE   25  236
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                4                25
  YES              42               236

Clustering(42) Variable = 1q loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     4   4
  1Q LOSS WILD-TYPE 168 114
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                8               282 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                4               114 
$`1Q LOSS MUTATED`
TCGA-21-5786 TCGA-22-4609 TCGA-22-5491 TCGA-39-5029 TCGA-39-5034 TCGA-43-3394 
       21.57         9.53        56.32        24.33        36.39        11.57 
TCGA-46-6026 TCGA-96-7544 
        0.59        39.88 

$`1Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       31.63        88.08        29.85        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 
       38.17        34.75        13.12        32.02        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.71         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.88        18.28        18.08        13.12        18.84         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.95         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.46         1.18         1.35         1.55         2.93         0.59 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        0.16        58.42         3.78        13.58         7.33        10.13 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.59              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            56.32            173.79 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            22.95             14.35 
[1] "0.6 - 56.3 (22.9)"  "0.0 - 173.8 (14.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    8
  1Q LOSS WILD-TYPE   79  219
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               1                79
  MALE                 8               219
D42V4, continuous
[1] "Remove cluster labels:" "1Q LOSS MUTATED"       
clus
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                1                51 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5783        TCGA-21-5787 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5483        TCGA-22-5485        TCGA-22-5489 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-56-7222        TCGA-60-2696        TCGA-60-2698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-85-7843        TCGA-85-7844 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-98-7454 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
D42V5, multiclass
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               3                67
  T2               4               183
  T3               2                30
  T4               0                18
D42V7, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0               5               186
  N1               3                81
  N2               1                25
  N3               0                 5
D42V8, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               8               263
  M1               0                 4
  MX               1                25
D42V9, multiclass
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  I                 4               152
  II                3                78
  III               2                60
  IV                0                 4
D42V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    8
  1Q LOSS WILD-TYPE   10  288
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                10
  YES               8               288
D42V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      0    9
  1Q LOSS WILD-TYPE   29  269
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                0                29
  YES               9               269

Clustering(43) Variable = 2q loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED     8   0
  2Q LOSS WILD-TYPE 164 118
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               282 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                0               118 
$`2Q LOSS MUTATED`
TCGA-18-3421 TCGA-21-1082 TCGA-21-5786 TCGA-37-4141 TCGA-51-4081 TCGA-60-2713 
       43.76       119.80        21.57         0.39         2.07        47.87 
TCGA-66-2763 TCGA-85-7699 
        0.99         0.03 

$`2Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43         9.30         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        0.79        17.88        18.28        18.08        13.12        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.84         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79         5.85         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.32         0.85        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       55.40        29.19         9.01        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
        0.79         1.12         0.59         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.18         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88        58.42         3.78        13.58         7.33        10.13 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.03              0.10 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           119.80            173.79 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           11.820            14.765 
[1] "0.0 - 119.8 (11.8)" "0.1 - 173.8 (14.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr="     "2.6e+07"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      2    6
  2Q LOSS WILD-TYPE   78  221
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               2                78
  MALE                 6               221
D43V4, continuous
D43V5, multiclass
D43V6, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               1                69
  T2               6               181
  T3               0                32
  T4               1                17
D43V7, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0               7               184
  N1               1                83
  N2               0                26
  N3               0                 5
D43V8, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0               8               263
  M1               0                 4
  MX               0                26
D43V9, multiclass
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  I                 6               150
  II                1                80
  III               1                61
  IV                0                 4
D43V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      0    8
  2Q LOSS WILD-TYPE   11  288
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                0                11
  YES               8               288
D43V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      1    7
  2Q LOSS WILD-TYPE   28  271
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                1                28
  YES               7               271

Clustering(44) Variable = 3p loss mutation analysis
D44V1, survival
                   sevent
clus2                0  1
  3P LOSS MUTATED   81 50
  3P LOSS WILD-TYPE 91 68
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              131               159 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               50                68 
$`3P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1075 
       28.34         6.15         2.79        90.51         3.02        70.13 
TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 
       31.69       119.80         8.78        88.08        21.57        10.82 
TCGA-22-0944 TCGA-22-4591 TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 
        7.33        20.45        38.17        13.12        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 
       11.77        64.90        63.52        14.60         0.79        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-33-4532 TCGA-33-4533 TCGA-33-4583 
       79.20        11.74        18.84        82.98       114.05       141.34 
TCGA-33-4587 TCGA-33-6738 TCGA-34-2600 TCGA-34-5231 TCGA-34-5239 TCGA-34-5929 
       54.44        26.99        61.61        50.24        10.82         4.96 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4141 TCGA-39-5024 TCGA-39-5027 
        6.54         8.09         7.46         0.39        70.03        60.76 
TCGA-39-5035 TCGA-39-5036 TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 
       15.58        35.64        13.12        18.84         7.00         2.79 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-51-4079 TCGA-51-4080 
        6.97        66.51         6.64         6.35         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 TCGA-56-7221 TCGA-56-7222 
        2.07        17.79        27.45        28.93         0.99         0.43 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2696 TCGA-60-2698 TCGA-60-2707 
        1.45         1.32         0.85         3.58        10.22        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2719 TCGA-60-2721 
       68.45        55.40        29.19         9.01        30.61        26.07 
TCGA-60-2722 TCGA-66-2742 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
       24.10        21.07         2.01         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 TCGA-66-2780 
        2.01         2.01         7.07        23.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 TCGA-66-2790 
        3.98        12.00        24.95        25.97        22.98        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 
        5.03        30.02        10.06         4.01         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7142 
       29.56        73.08        75.09        23.28        89.95        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8128 TCGA-77-8130 TCGA-77-8140 
       70.09       106.95         0.16        37.81        82.92        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8154 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       26.40        27.39        35.90         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-7767 
        1.25         0.53         1.41         0.46         1.18         2.93 
TCGA-92-8063 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-98-8021 
        4.01         2.86         0.16        39.88        13.58 

$`3P LOSS WILD-TYPE`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       79.46         4.80        13.02        24.92         1.61        43.76 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
       27.16       115.59        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0940 
       15.55       122.43         9.30        31.63        29.85        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 
       48.82        35.08        48.33        24.13         0.56        34.75 
TCGA-22-4605 TCGA-22-5471 TCGA-22-5477 TCGA-22-5479 TCGA-22-5485 TCGA-22-5489 
       32.02        31.69        44.22        54.28        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32        16.60        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 
       14.07        10.98        19.76         2.63        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       32.84        31.23        51.78        32.68         9.04         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        0.39         7.82         6.81         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       44.71        68.58        55.17         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       27.35        36.39         0.79        17.88        18.28        18.08 
TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
       11.57         8.48        18.05         6.02         5.42         3.78 
TCGA-43-7657 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7809 TCGA-52-7811 
        1.58         9.96         0.95         0.59         5.85         8.75 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7223 TCGA-60-2695 TCGA-60-2697 
        0.10         2.04         1.02         0.99        15.55        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2709 TCGA-60-2713 TCGA-60-2714 
       96.82        37.94        82.19        49.48        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       35.34        38.83         3.16        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10         2.01         0.99         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2771 
        0.92         0.99        25.02         1.02         2.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2785 TCGA-66-2787 TCGA-66-2789 TCGA-66-2794 
        3.02         2.01         1.94        40.01         4.04        54.08 
TCGA-66-2800 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7463 TCGA-77-7465 
       49.05        11.18        20.78         0.49        46.78        15.75 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8145 
       12.59        53.92        39.09        17.69       104.09         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        9.63        54.41         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-90-6837 TCGA-90-7766 
        0.59         1.15         0.85         1.97         1.35         1.55 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-96-7545 
        0.59         2.70         3.48         5.26         2.27        58.42 
TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        3.78         7.33        10.13 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.03              0.10 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           141.34            173.79 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            13.58             15.55 
[1] "0.0 - 141.3 (13.6)" "0.1 - 173.8 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     36  100
  3P LOSS WILD-TYPE   44  127
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              36                44
  MALE               100               127
D44V4, continuous
D44V5, multiclass
D44V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              31                39
  T2              84               103
  T3              13                19
  T4               8                10
D44V7, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0              85               106
  N1              37                47
  N2              11                15
  N3               3                 2
D44V8, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0             120               151
  M1               2                 2
  MX              10                16
D44V9, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  I                71                85
  II               34                47
  III              27                35
  IV                2                 2
D44V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      6  130
  3P LOSS WILD-TYPE    5  166
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                6                 5
  YES             130               166
D44V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     16  120
  3P LOSS WILD-TYPE   13  158
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               16                13
  YES             120               158

Clustering(45) Variable = 3q loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    14  11
  3Q LOSS WILD-TYPE 158 107
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               25               265 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               11               107 
$`3Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1075 TCGA-22-4604 
       81.07        11.34        28.34         3.02        70.13        13.12 
TCGA-22-5483 TCGA-33-4533 TCGA-37-4129 TCGA-43-2581 TCGA-56-1622 TCGA-56-7579 
       18.84       114.05         6.54        13.12        28.93         1.45 
TCGA-60-2696 TCGA-60-2698 TCGA-66-2754 TCGA-66-2769 TCGA-66-2791 TCGA-66-2793 
        3.58        10.22         2.01         7.07         5.03        10.06 
TCGA-68-7755 TCGA-77-6843 TCGA-77-7142 TCGA-77-8154 TCGA-85-8070 TCGA-85-8071 
        2.73        73.08        42.25        35.90         1.41         0.46 
TCGA-94-7557 
        0.16 

$`3Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 
       90.51        27.16       115.59        46.88        99.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       34.78        15.55        31.69       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.08        29.85        21.57        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        34.75        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 
       30.08        62.86        56.32        16.60        82.98        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 
        4.96         1.08         3.95         0.43         0.39         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 
       35.64         0.79        17.88        18.28        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.84         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
        2.07        17.79         5.85         8.75        27.45         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 
        2.04         1.02         0.99         0.43         0.99         1.32 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        0.85        15.55        12.23        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 
       22.98        30.02        54.08         4.01        49.05         6.64 
TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       29.56        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        0.49        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        1.97         0.53         1.18         1.35         1.55         2.93 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        2.86        39.88        58.42         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           114.05            173.79 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            10.22             15.58 
[1] "0.2 - 114.0 (10.2)" "0.0 - 173.8 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      7   20
  3Q LOSS WILD-TYPE   73  207
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               7                73
  MALE                20               207
D45V4, continuous
D45V5, multiclass
D45V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               5                65
  T2              15               172
  T3               5                27
  T4               2                16
D45V7, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0              13               178
  N1              12                72
  N2               1                25
  N3               1                 4
D45V8, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              27               244
  M1               0                 4
  MX               0                26
D45V9, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  I                 9               147
  II               10                71
  III               8                54
  IV                0                 4
D45V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      0   27
  3Q LOSS WILD-TYPE   11  269
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                0                11
  YES              27               269
D45V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      4   23
  3Q LOSS WILD-TYPE   25  255
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                4                25
  YES              23               255

Clustering(46) Variable = 4p loss mutation analysis
D46V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED   81 43
  4P LOSS WILD-TYPE 91 75
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              124               166 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               43                75 
$`4P LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3415 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 
        4.47        46.52        59.51        43.76         6.15         3.02 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 
      115.59        46.88        34.78        31.69       122.43       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 
        8.78        31.63        21.57        19.99         7.33        14.10 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 
       48.33        38.17        13.12        19.30         9.53        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       63.52        14.60        44.22        18.84        30.08        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 
       56.32        82.98       114.05        97.94        43.10       141.34 
TCGA-33-4587 TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 TCGA-34-5927 
       54.44        19.76        61.61        28.96        50.24        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
        5.52         4.96         1.08         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5027 TCGA-39-5031 
        6.81         0.39         3.39        74.07        60.76        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-2578 TCGA-43-3394 
       36.39        15.58        35.64         0.79        18.08        11.57 
TCGA-43-6143 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-46-6026 TCGA-51-4081 
        7.00         6.97         1.58         6.64         0.59         2.07 
TCGA-52-7812 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-60-2696 
       27.45         0.99         0.43         0.99         0.85         3.58 
TCGA-60-2698 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       10.22        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-66-2737 TCGA-66-2754 
       30.61        26.07        24.10         1.22         2.01         2.01 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2767 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 
       25.02         2.01         2.01        19.00        19.00        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2791 TCGA-66-2792 
        3.98        24.95         1.94        25.97         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-7139 TCGA-77-7142 TCGA-77-7335 TCGA-77-8128 TCGA-77-8145 TCGA-77-8148 
       89.95        42.25        70.09        37.81         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       54.41        35.90         0.59         0.33         1.61         0.03 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-7766 TCGA-92-7341 
        0.53         1.41         0.46         1.18         1.55         3.48 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7557 TCGA-98-8021 
        4.01         2.27         0.16        13.58 

$`4P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46         4.80        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       28.34        24.92         1.61         2.79        90.51        27.16 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5783 
       99.16        70.13        60.89        15.55         9.30        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       29.85        10.82        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        35.08        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4613 TCGA-22-5471 TCGA-22-5478 TCGA-22-5479 
       34.75        32.02        11.77        31.69         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5492 TCGA-33-4566 TCGA-33-4582 
       71.34        79.20        11.74        16.60       173.79       103.53 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2608 
       14.07        10.98        26.99         2.63        31.50        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       31.23        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 
       14.07         0.39         6.54         8.09         7.46        47.80 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
        1.94        17.88        18.28        13.12        18.84         8.48 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7658 
       18.05         6.02         2.79         5.42         3.78        66.51 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 
        6.35         9.96         0.95         0.39         0.39        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        5.85         8.75        28.93         0.10         2.04         1.02 
TCGA-56-7579 TCGA-56-7580 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        1.45         1.32        15.55        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2715 TCGA-60-2716 
       82.19        21.70        68.45        49.48        35.34        38.83 
TCGA-60-2720 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
        3.16        22.78        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         1.02         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
       20.98         0.99         1.02         2.01         7.07        23.01 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2782 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
        3.02         2.01        12.00        40.01        22.98         4.04 
TCGA-66-2790 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
       22.98        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       20.78         0.49       106.95         0.16        46.78        15.75 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
       11.54        26.40        27.39         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-90-6837 
        1.12         1.15         1.25         0.85         1.97         1.35 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-8064 TCGA-94-7033 TCGA-96-7544 
        2.93         0.59         2.70         5.26         2.86        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78         7.33        10.13 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.03              0.10 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           141.34            173.79 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            15.09             14.50 
[1] "0.0 - 141.3 (15.1)" "0.1 - 173.8 (14.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     34   96
  4P LOSS WILD-TYPE   46  131
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              34                46
  MALE                96               131
D46V4, continuous
D46V5, multiclass
D46V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1              31                39
  T2              73               114
  T3              16                16
  T4              10                 8
D46V7, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0              79               112
  N1              34                50
  N2              13                13
  N3               4                 1
D46V8, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0             117               154
  M1               0                 4
  MX              10                16
D46V9, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  I                63                93
  II               31                50
  III              34                28
  IV                0                 4
D46V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      5  125
  4P LOSS WILD-TYPE    6  171
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                5                 6
  YES             125               171
D46V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     15  115
  4P LOSS WILD-TYPE   14  163
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               15                14
  YES             115               163

Clustering(47) Variable = 4q loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    68  40
  4Q LOSS WILD-TYPE 104  78
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              108               182 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               40                78 
$`4Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3415 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 
        4.47        46.52        59.51         6.15        90.51         3.02 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 
      115.59        46.88        99.16        70.13        34.78       122.43 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-22-0944 TCGA-22-1012 
      119.80         8.78        31.63        21.57         7.33        14.10 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       38.17        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       14.60        18.84        30.08        62.86        56.32        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 
      114.05        97.94       173.79       141.34        54.44        19.76 
TCGA-34-2600 TCGA-34-2605 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       61.61        28.96        22.95         5.52         4.96         1.08 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5027 TCGA-39-5031 
        7.82         6.81         0.39         3.39        60.76        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-43-2578 TCGA-43-3394 TCGA-43-6143 
       36.39        15.58        35.64        18.08        11.57         7.00 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        1.58        66.51         6.64         9.96         0.59         0.39 
TCGA-51-4081 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-60-2696 
        2.07         0.99         0.43         0.99         0.85         3.58 
TCGA-60-2698 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 
       10.22        29.19         9.01        47.87        16.83        30.61 
TCGA-60-2722 TCGA-60-2724 TCGA-66-2737 TCGA-66-2754 TCGA-66-2757 TCGA-66-2763 
       24.10         1.22         2.01         2.01         0.99         0.99 
TCGA-66-2765 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 
        2.01        19.00        12.03         3.98         1.94        25.97 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-7139 TCGA-77-7142 TCGA-77-8128 TCGA-77-8145 
        2.73         6.64        89.95        42.25        37.81         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-8052 
        9.63        54.41         1.12         0.59         0.03         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-92-8063 TCGA-92-8065 TCGA-94-7557 TCGA-98-8021 
        1.41         1.18         4.01         2.27         0.16        13.58 

$`4Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46         4.80        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 
       28.34        24.92         1.61        43.76         2.79        27.16 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 
       60.89        15.55        31.69         9.30        88.08        29.85 
TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       10.82        19.99        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5477 
        0.56        34.75        32.02         9.53        31.69        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5492 
        0.79        54.28        71.34        79.20        11.74        16.60 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
       43.10       103.53        14.07        10.98        26.99         2.63 
TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       31.50        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 
        9.04        10.82         7.73        14.07         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 TCGA-39-5016 
        0.39         6.54         8.09         7.46        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 
        1.94         0.79        17.88        18.28        13.12        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-8116 TCGA-46-6025 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
        6.97         6.35         0.95         0.39        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7579 TCGA-56-7580 TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        1.45         1.32        15.55        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2715 
       82.19        21.70        68.45        49.48        55.40        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
       38.83         3.16        26.07        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 
       16.96        43.10        21.07         0.99         1.02         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        20.98        25.02         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2782 
        7.07        23.01        19.00         3.02         2.01        12.00 
TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-77-6842 
       24.95        40.01        22.98         4.04        22.98        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 
       70.09       106.95         0.16        46.78        15.75        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
       26.40        27.39        35.90         0.33         0.36         0.79 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        0.33         1.61         1.15         1.25         0.85         1.97 
TCGA-85-8071 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        0.46         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        3.48         5.26         2.86        39.88        58.42         3.78 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.03              0.10 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           173.79            106.95 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            13.35             15.65 
[1] "0.0 - 173.8 (13.3)" "0.1 - 107.0 (15.7)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     35   77
  4Q LOSS WILD-TYPE   45  150
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              35                45
  MALE                77               150
D47V4, continuous
D47V5, multiclass
D47V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              25                45
  T2              65               122
  T3              13                19
  T4               9                 9
D47V7, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0              73               118
  N1              29                55
  N2               8                18
  N3               2                 3
D47V8, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0             102               169
  M1               0                 4
  MX               7                19
D47V9, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  I                59                97
  II               24                57
  III              27                35
  IV                0                 4
D47V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      5  107
  4Q LOSS WILD-TYPE    6  189
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                5                 6
  YES             107               189
D47V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     14   98
  4Q LOSS WILD-TYPE   15  180
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               14                15
  YES              98               180

Clustering(48) Variable = 5p loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     6  10
  5P LOSS WILD-TYPE 166 108
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               16               274 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10               108 
$`5P LOSS MUTATED`
TCGA-18-4083 TCGA-21-1079 TCGA-22-5472 TCGA-22-5491 TCGA-33-6737 TCGA-34-2605 
        6.15        31.69        64.90        56.32        19.76        28.96 
TCGA-34-5231 TCGA-37-4130 TCGA-43-2578 TCGA-51-4079 TCGA-66-2780 TCGA-66-2791 
       50.24         8.09        18.08         0.39        12.03         5.03 
TCGA-66-2793 TCGA-85-7698 TCGA-92-8063 TCGA-94-7033 
       10.06         1.61         4.01         2.86 

$`5P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.69        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 
      103.53       141.34        14.07        54.44        10.98        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
        2.63        61.61        31.50        32.84        31.23        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.54         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       15.58        35.64         0.79        17.88        18.28        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.45         1.32         0.85        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02         2.01        19.00         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
        6.97         9.63        54.41        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 
        0.79         1.12         0.59         0.33         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.18         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        3.48         5.26         2.27         0.16        39.88        58.42 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        3.78        13.58         7.33        10.13 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.39              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            64.90            173.79 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           11.045            15.240 
[1] "0.4 - 64.9 (11.0)"  "0.0 - 173.8 (15.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3   16
  5P LOSS WILD-TYPE   77  211
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               3                77
  MALE                16               211
D48V4, continuous
D48V5, multiclass
D48V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               7                63
  T2               8               179
  T3               2                30
  T4               2                16
D48V7, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0              12               179
  N1               4                80
  N2               2                24
  N3               1                 4
D48V8, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0              16               255
  M1               0                 4
  MX               2                24
D48V9, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  I                10               146
  II                3                78
  III               6                56
  IV                0                 4
D48V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      2   17
  5P LOSS WILD-TYPE    9  279
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                2                 9
  YES              17               279
D48V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      4   15
  5P LOSS WILD-TYPE   25  263
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                4                25
  YES              15               263

Clustering(49) Variable = 5q loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    69  36
  5Q LOSS WILD-TYPE 103  82
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              105               185 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               36                82 
$`5Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       81.07         4.80        46.52        13.02        59.51        28.34 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 
        6.15         2.79        90.51       115.59        99.16        31.69 
TCGA-21-1082 TCGA-21-5786 TCGA-22-0944 TCGA-22-4591 TCGA-22-4599 TCGA-22-4607 
      119.80        21.57         7.33        20.45        38.17        19.30 
TCGA-22-4609 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5485 
        9.53        64.90        63.52        14.60        44.22        30.08 
TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 
       56.32       114.05        97.94        54.44        19.76        26.99 
TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 
       61.61        28.96        50.24        10.82        22.95         4.96 
TCGA-34-7107 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-39-5016 
        1.08         8.09         7.46         7.82         6.81        74.07 
TCGA-39-5027 TCGA-39-5029 TCGA-39-5036 TCGA-43-2578 TCGA-43-3394 TCGA-43-6770 
       60.76        24.33        35.64        18.08        11.57         2.79 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 
        6.35         9.96         0.59         0.39         2.07        17.79 
TCGA-56-5897 TCGA-56-7221 TCGA-60-2696 TCGA-60-2706 TCGA-60-2707 TCGA-60-2710 
        0.10         0.99         3.58        82.19        21.70        55.40 
TCGA-60-2711 TCGA-60-2714 TCGA-60-2721 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 
       29.19        16.83        26.07        21.07         1.02         0.92 
TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 TCGA-66-2771 TCGA-66-2780 
        0.99        25.02         0.99         7.07        19.00        12.03 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 
        3.98         1.94        22.98         4.04         5.03        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-7139 TCGA-77-7141 
       54.08        49.05         2.73         6.64        89.95         0.49 
TCGA-77-7142 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       42.25       104.09        11.54        26.40         6.97         9.63 
TCGA-77-8154 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-8052 TCGA-85-8070 
       35.90         1.12         0.33         1.61         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-90-7766 TCGA-90-7767 TCGA-92-8063 TCGA-94-7033 
        0.46         1.18         1.55         2.93         4.01         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-98-8021 
        0.16        39.88        13.58 

$`5Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3412 TCGA-18-3417 TCGA-18-3419 
       12.16         4.47        79.46        11.34        24.92         1.61 
TCGA-18-3421 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 
       43.76         3.02        27.16        46.88        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       34.78        15.55       122.43         9.30         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 
       88.08        29.85        10.82        19.99        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33        24.13         0.56        34.75        13.12        32.02 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       11.77        31.69         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 
       11.74        18.84        62.86        16.60        82.98        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 
      173.79       103.53       141.34        14.07        10.98         2.63 
TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       31.50        32.84        31.23        51.78        32.68         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        7.73        14.07         5.52         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        6.54         0.39         3.39        47.80        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       55.17        70.03         1.71         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 
       15.58         0.79        17.88        18.28        13.12        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         7.00         6.02         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-6025 TCGA-51-4080 
        6.97         1.58        66.51         6.64         0.95         0.39 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 
        5.85         8.75        27.45        28.93         2.04         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 
       12.23        10.22        96.82        37.94        68.45        49.48 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        47.87        35.34        38.83        30.61         3.16 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 
       43.10         2.01         0.99         2.01         0.99        20.98 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 
        2.01         1.02         2.01         2.01        23.01         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
        2.01        19.00        12.00        24.95        25.97        40.01 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2795 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       22.98        30.02         4.01        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       23.28        11.18        20.78        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8144 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 
       39.09        17.69        27.39        54.41         0.33         0.36 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.79         0.59         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
        1.97         1.35         0.59         2.70         3.48         5.26 
TCGA-92-8065 TCGA-96-7545 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        2.27        58.42         3.78         7.33        10.13 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.10              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           119.80            173.79 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            13.58             15.55 
[1] "0.1 - 119.8 (13.6)" "0.0 - 173.8 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     27   85
  5Q LOSS WILD-TYPE   53  142
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              27                53
  MALE                85               142
D49V4, continuous
D49V5, multiclass
D49V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              29                41
  T2              59               128
  T3              12                20
  T4              12                 6
D49V7, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0              76               115
  N1              24                60
  N2              10                16
  N3               2                 3
D49V8, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              97               174
  M1               3                 1
  MX              10                16
D49V9, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  I                58                98
  II               20                61
  III              30                32
  IV                3                 1
D49V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      5  107
  5Q LOSS WILD-TYPE    6  189
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                5                 6
  YES             107               189
D49V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     12  100
  5Q LOSS WILD-TYPE   17  178
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               12                17
  YES             100               178

Clustering(50) Variable = 6p loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    18  14
  6P LOSS WILD-TYPE 154 104
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               32               258 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               14               104 
$`6P LOSS MUTATED`
TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-5592 TCGA-22-0940 TCGA-22-4599 
       59.51        28.34         6.15         3.02        19.99        38.17 
TCGA-22-4609 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5483 TCGA-22-5492 
        9.53        63.52        44.22         0.79        18.84        16.60 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5027 TCGA-39-5034 TCGA-43-6143 TCGA-46-3768 
        3.39        74.07        60.76        36.39         7.00         9.96 
TCGA-51-4081 TCGA-56-7579 TCGA-56-7582 TCGA-60-2707 TCGA-66-2782 TCGA-66-2792 
        2.07         1.45         0.85        21.70        12.00        30.02 
TCGA-66-2794 TCGA-77-8128 TCGA-77-8140 TCGA-85-8070 TCGA-90-7767 TCGA-92-7341 
       54.08        37.81        11.54         1.41         2.93         3.48 
TCGA-92-8065 TCGA-96-7544 
        2.27        39.88 

$`6P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       11.34        13.02        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51        27.16       115.59        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       10.82         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        34.75        13.12        32.02        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
       11.77        31.69        64.90        14.60        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       79.20        11.74        30.08        62.86        56.32        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        47.80        44.71        68.58        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        0.79        17.88        18.28        18.08        13.12        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48        18.05         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
        0.95         0.59         0.39         0.39        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-60-2695 TCGA-60-2696 
        0.99         0.43         0.99         1.32        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 
       12.23        10.22        96.82        37.94        82.19        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
        3.02         2.01        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
        5.03        10.06         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       46.78        15.75        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       17.69       104.09        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        0.85         1.97         0.53         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7769 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 
        1.55         0.59         2.70         4.01         5.26         2.86 
TCGA-94-7557 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        0.16        58.42         3.78        13.58         7.33        10.13 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.79              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            74.07            173.79 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           14.300            14.765 
[1] "0.8 - 74.1 (14.3)"  "0.0 - 173.8 (14.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      5   28
  6P LOSS WILD-TYPE   75  199
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               5                75
  MALE                28               199
D50V4, continuous
D50V5, multiclass
D50V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               4                66
  T2              20               167
  T3               8                24
  T4               1                17
D50V7, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0              17               174
  N1              12                72
  N2               4                22
  N3               0                 5
D50V8, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              29               242
  M1               0                 4
  MX               4                22
D50V9, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  I                12               144
  II               15                66
  III               6                56
  IV                0                 4
D50V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      0   33
  6P LOSS WILD-TYPE   11  263
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                0                11
  YES              33               263
D50V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      4   29
  6P LOSS WILD-TYPE   25  249
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                4                25
  YES              29               249

Clustering(51) Variable = 6q loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    21  11
  6Q LOSS WILD-TYPE 151 107
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               32               258 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               11               107 
$`6Q LOSS MUTATED`
TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-5592 TCGA-22-4599 TCGA-22-4601 
       59.51        28.34         6.15         3.02        38.17        34.75 
TCGA-22-4607 TCGA-22-5478 TCGA-22-5492 TCGA-34-5231 TCGA-34-5928 TCGA-37-5819 
       19.30         0.79        16.60        50.24         5.52         3.39 
TCGA-39-5016 TCGA-39-5027 TCGA-39-5034 TCGA-43-2581 TCGA-43-6143 TCGA-52-7812 
       74.07        60.76        36.39        13.12         7.00        27.45 
TCGA-56-7582 TCGA-60-2707 TCGA-66-2763 TCGA-66-2782 TCGA-66-2783 TCGA-66-2791 
        0.85        21.70         0.99        12.00        24.95         5.03 
TCGA-66-2792 TCGA-66-2795 TCGA-77-8140 TCGA-85-7698 TCGA-90-7767 TCGA-92-7341 
       30.02         4.01        11.54         1.61         2.93         3.48 
TCGA-92-8065 TCGA-96-7544 
        2.27        39.88 

$`6Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       11.34        13.02        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51        27.16       115.59        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 
       48.33        24.13         0.56        13.12        32.02         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        31.23        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
        7.73        14.07        22.95         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        47.80        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       70.03         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 
       35.64         0.79        17.88        18.28        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48        18.05         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       17.79         5.85         8.75        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       82.19        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
       10.06        54.08        49.05         2.73         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       15.75        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       17.69       104.09        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.59         0.33         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7769 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 
        1.55         0.59         2.70         4.01         5.26         2.86 
TCGA-94-7557 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        0.16        58.42         3.78        13.58         7.33        10.13 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.79              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            74.07            173.79 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            12.56             15.24 
[1] "0.8 - 74.1 (12.6)"  "0.0 - 173.8 (15.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
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       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     10   25
  6Q LOSS WILD-TYPE   70  202
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              10                70
  MALE                25               202
D51V4, continuous
D51V5, multiclass
D51V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1               3                67
  T2              24               163
  T3               6                26
  T4               2                16
D51V7, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              20               171
  N1              10                74
  N2               3                23
  N3               2                 3
D51V8, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              31               240
  M1               0                 4
  MX               4                22
D51V9, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  I                14               142
  II               14                67
  III               7                55
  IV                0                 4
D51V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      0   35
  6Q LOSS WILD-TYPE   11  261
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                0                11
  YES              35               261
D51V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      2   33
  6Q LOSS WILD-TYPE   27  245
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                2                27
  YES              33               245

Clustering(52) Variable = 7p loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    12   6
  7P LOSS WILD-TYPE 160 112
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               18               272 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6               112 
$`7P LOSS MUTATED`
TCGA-18-3419 TCGA-21-1083 TCGA-21-5786 TCGA-22-4601 TCGA-22-5492 TCGA-33-6738 
        1.61         8.78        21.57        34.75        16.60        26.99 
TCGA-37-3789 TCGA-37-5819 TCGA-39-5036 TCGA-46-6026 TCGA-56-1622 TCGA-66-2757 
        0.43         3.39        35.64         0.59        28.93         0.99 
TCGA-66-2783 TCGA-66-2792 TCGA-66-2793 TCGA-77-7142 TCGA-77-7337 TCGA-77-8144 
       24.95        30.02        10.06        42.25       106.95        27.39 

$`7P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43         9.30       119.80        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       35.08        48.33        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 
      141.34        14.07        54.44        10.98        19.76         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
       22.95         5.52         4.96         1.08         3.95         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       15.58         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        6.64         6.35         9.96         0.95         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
        2.07        17.79         5.85         8.75        27.45         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.32         0.85        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 
       40.01        22.98         4.04        22.98         5.03        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 
        4.01        49.05         2.73         6.64        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
       70.09         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       26.40         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        1.41         0.46         1.18         1.35         1.55         2.93 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.43              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           106.95            173.79 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           23.260            14.085 
[1] "0.4 - 107.0 (23.3)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      4   15
  7P LOSS WILD-TYPE   76  212
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               4                76
  MALE                15               212
D52V4, continuous
D52V5, multiclass
D52V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               4                66
  T2              13               174
  T3               0                32
  T4               2                16
D52V7, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0              10               181
  N1               5                79
  N2               3                23
  N3               1                 4
D52V8, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0              17               254
  M1               0                 4
  MX               1                25
D52V9, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  I                 9               147
  II                4                77
  III               6                56
  IV                0                 4
D52V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1   18
  7P LOSS WILD-TYPE   10  278
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                10
  YES              18               278
D52V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1   18
  7P LOSS WILD-TYPE   28  260
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                28
  YES              18               260

Clustering(53) Variable = 7q loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     7   4
  7Q LOSS WILD-TYPE 165 114
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               11               279 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4               114 
$`7Q LOSS MUTATED`
TCGA-21-1082 TCGA-21-5786 TCGA-22-4601 TCGA-22-5481 TCGA-37-3789 TCGA-37-5819 
      119.80        21.57        34.75        79.20         0.43         3.39 
TCGA-46-6026 TCGA-56-1622 TCGA-66-2754 TCGA-66-2773 TCGA-77-8144 
        0.59        28.93         2.01         3.02        27.39 

$`7Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       15.55        31.69       122.43         9.30         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       88.08        29.85        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       71.34        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       18.28        18.08        13.12        11.57        18.84         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.95         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         2.73         6.64        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       70.09       106.95         0.16        46.78        15.75        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       11.54        26.40         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        2.27         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.43              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           119.80            173.79 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            21.57             14.60 
[1] "0.4 - 119.8 (21.6)" "0.0 - 173.8 (14.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      2    9
  7Q LOSS WILD-TYPE   78  218
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               2                78
  MALE                 9               218
D53V4, continuous
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2                50 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5783        TCGA-21-5787 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5483        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4129        TCGA-37-4130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-43-2576 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-60-2696        TCGA-60-2698        TCGA-60-2712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2725        TCGA-60-2726        TCGA-70-6722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-70-6723        TCGA-85-7843        TCGA-85-7844        TCGA-92-7340 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7341        TCGA-98-7454 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
D53V5, multiclass
D53V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               0                70
  T2              10               177
  T3               0                32
  T4               1                17
D53V7, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0               7               184
  N1               2                82
  N2               2                24
  N3               0                 5
D53V8, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0              10               261
  M1               0                 4
  MX               0                26
D53V9, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  I                 6               150
  II                2                79
  III               3                59
  IV                0                 4
D53V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   10
  7Q LOSS WILD-TYPE   10  286
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                10
  YES              10               286
D53V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      0   11
  7Q LOSS WILD-TYPE   29  267
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                0                29
  YES              11               267

Clustering(54) Variable = 8p loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    54  34
  8P LOSS WILD-TYPE 118  84
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               88               202 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               34                84 
$`8P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4721 TCGA-18-5592 
       12.16        59.51        28.34         1.61        90.51         3.02 
TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-22-1002 TCGA-22-4591 TCGA-22-4594 
      122.43         8.78        31.63         4.31        20.45        48.33 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4609 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       34.75        13.12         9.53        44.22         0.79        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4547 
       79.20        18.84        30.08        56.32        16.60        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-6738 TCGA-34-2609 TCGA-34-5236 TCGA-37-3783 
      173.79       103.53        26.99        31.23         9.04         3.95 
TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-39-5027 TCGA-39-5035 
        0.43         6.81         0.39        44.71        60.76        15.58 
TCGA-43-6143 TCGA-43-6770 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        7.00         2.79         1.58         6.64         6.35         9.96 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7812 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        0.39         2.07        27.45         0.43         0.99         1.45 
TCGA-56-7580 TCGA-60-2711 TCGA-60-2713 TCGA-60-2721 TCGA-66-2727 TCGA-66-2737 
        1.32        29.19        47.87        26.07        16.96         2.01 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 TCGA-66-2768 
        1.02         2.01         0.99        25.02         1.02         2.01 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2792 TCGA-66-2795 
       12.03        12.00        24.95         1.94        30.02         4.01 
TCGA-68-7755 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7337 TCGA-77-8140 
        2.73        29.56        23.28        11.18       106.95        11.54 
TCGA-77-8145 TCGA-77-8154 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
        6.97        35.90         1.12         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-8070 TCGA-90-7766 TCGA-90-7767 TCGA-92-7341 TCGA-92-8063 
        1.25         1.41         1.55         2.93         3.48         4.01 
TCGA-94-7557 TCGA-96-7544 TCGA-98-8021 TCGA-98-8022 
        0.16        39.88        13.58         7.33 

$`8P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5595 
       13.02        24.92        43.76         6.15         2.79        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5783 TCGA-21-5784 
       15.55        31.69         9.30       119.80        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 
       21.57        10.82        19.99         7.33        14.93        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        48.82        35.08        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
        0.56        38.17        32.02        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5482 TCGA-22-5489 
       64.90        63.52        14.60        54.28        11.74        62.86 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       82.98       114.05        97.94       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       32.84        50.24        51.78        32.68        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3792 
       14.07        22.95         5.52         4.96         1.08         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 
        6.54         8.09         7.46         7.82         3.39        47.80 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       74.07        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        36.39        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       18.28        18.08        13.12        11.57        18.84         8.48 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       18.05         6.02         5.42         3.78         6.97        66.51 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.95         0.59         0.39        17.79         5.85         8.75 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7582 
       28.93         0.10         2.04         1.02         0.99         0.85 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       82.19        21.70        68.45        49.48        55.40         9.01 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 
       16.83        35.34        38.83        30.61         3.16        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 
       22.78         1.22        23.64        11.77        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
        0.99         0.92         0.99        20.98         0.99         2.01 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       19.00         3.98        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7756 
       22.98         5.03        10.06        54.08        49.05         6.64 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       73.08        75.09        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
       70.09         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 
       12.59        53.92        39.09        17.69       104.09        26.40 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
       27.39         9.63        54.41         0.33         0.36         0.79 
TCGA-85-7696 TCGA-85-7699 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 
        0.59         0.03         0.85         1.97         0.53         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 TCGA-92-8064 TCGA-92-8065 
        1.18         1.35         0.59         2.70         5.26         2.27 
TCGA-94-7033 TCGA-96-7545 TCGA-98-7454 TCGA-98-8023 
        2.86        58.42         3.78        10.13 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.16              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           173.79            141.34 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            9.745            17.965 
[1] "0.2 - 173.8 (9.7)"  "0.0 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     22   71
  8P LOSS WILD-TYPE   58  156
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              22                58
  MALE                71               156
D54V4, continuous
D54V5, multiclass
D54V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              26                44
  T2              49               138
  T3              13                19
  T4               5                13
D54V7, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0              55               136
  N1              27                57
  N2              10                16
  N3               1                 4
D54V8, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              80               191
  M1               0                 4
  MX              10                16
D54V9, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  I                46               110
  II               26                55
  III              20                42
  IV                0                 4
D54V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      1   92
  8P LOSS WILD-TYPE   10  204
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                1                10
  YES              92               204
D54V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      7   86
  8P LOSS WILD-TYPE   22  192
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                7                22
  YES              86               192

Clustering(55) Variable = 8q loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     8   1
  8Q LOSS WILD-TYPE 164 117
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9               281 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                1               117 
$`8Q LOSS MUTATED`
TCGA-22-5483 TCGA-37-4135 TCGA-37-4141 TCGA-43-6143 TCGA-56-7580 TCGA-60-2713 
       18.84         6.81         0.39         7.00         1.32        47.87 
TCGA-66-2766 TCGA-77-8154 TCGA-85-7844 
        1.02        35.90         1.25 

$`8Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 
        6.54         8.09         7.46         7.82         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48        18.05         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.45         0.85        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       55.40        29.19         9.01        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        6.97         9.63        54.41         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 
        1.35         1.55         2.93         0.59         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.27         2.86         0.16        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78        13.58         7.33        10.13 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.39              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            47.87            173.79 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             6.81             15.55 
[1] "0.4 - 47.9 (6.8)"   "0.0 - 173.8 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      1    8
  8Q LOSS WILD-TYPE   79  219
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               1                79
  MALE                 8               219
D55V4, continuous
D55V5, multiclass
D55V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               3                67
  T2               6               181
  T3               0                32
  T4               0                18
D55V7, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0               6               185
  N1               2                82
  N2               1                25
  N3               0                 5
D55V8, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               9               262
  M1               0                 4
  MX               0                26
D55V9, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  I                 5               151
  II                2                79
  III               2                60
  IV                0                 4
D55V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0    9
  8Q LOSS WILD-TYPE   11  287
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                11
  YES               9               287
D55V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      2    7
  8Q LOSS WILD-TYPE   27  271
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                2                27
  YES               7               271

Clustering(56) Variable = 9p loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    69  46
  9P LOSS WILD-TYPE 103  72
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              115               175 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               46                72 
$`9P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3411 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 
       12.16        79.46        46.52        59.51         1.61         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 
        2.79         3.02        46.88        70.13        34.78       122.43 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-22-1012 TCGA-22-4591 
      119.80         8.78        88.08        21.57        14.10        20.45 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        19.30         9.53        11.77        64.90 
TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-33-4538 TCGA-33-4547 
        0.79        11.74        30.08        56.32        97.94        43.10 
TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 
       54.44        19.76        26.99        28.96        31.23        50.24 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-39-5027 TCGA-39-5029 
        4.96         0.43         6.81         0.39        60.76        24.33 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 
       27.35        36.39        15.58        18.28        11.57        18.84 
TCGA-43-6770 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-6026 
        2.79         6.97         1.58         6.64         6.35         0.59 
TCGA-51-4081 TCGA-52-7809 TCGA-56-1622 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        2.07         5.85        28.93         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 
        1.45         1.32         3.58        10.22        82.19        21.70 
TCGA-60-2711 TCGA-60-2719 TCGA-60-2721 TCGA-60-2724 TCGA-66-2727 TCGA-66-2737 
       29.19        30.61        26.07         1.22        16.96         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 TCGA-66-2765 
       21.07         1.02         0.92         0.99        25.02         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        1.02         2.01         7.07        19.00         3.02        19.00 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 
        3.98        12.00         1.94        25.97         4.04        22.98 
TCGA-66-2793 TCGA-66-2794 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7142 
       10.06        54.08        73.08        75.09        23.28        42.25 
TCGA-77-7337 TCGA-77-7338 TCGA-77-8128 TCGA-77-8130 TCGA-77-8140 TCGA-77-8143 
      106.95         0.16        37.81        82.92        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8154 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 
       27.39         6.97        35.90         0.59         0.33         0.03 
TCGA-90-7766 TCGA-90-7767 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        1.55         2.93         4.01         2.27         2.86         0.16 
TCGA-98-8021 
       13.58 

$`9P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 
        4.47        81.07         4.80        11.34        13.02        28.34 
TCGA-18-3417 TCGA-18-3421 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1072 
       24.92        43.76        90.51        27.16       115.59        99.16 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        15.55        31.69         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
        1.74        27.02        48.82        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
        0.56        13.12        32.02        31.69        63.52        14.60 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 
       44.22        54.28        71.34        79.20        18.84        62.86 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       16.60        82.98       114.05       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       14.07        10.98         2.63        61.61        31.50        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 
       22.95         5.52         1.08         3.95         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        8.09         7.46         7.82         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 
       44.71        68.58        55.17        70.03         1.71         1.94 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 
       35.64         0.79        17.88        18.08        13.12         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7658 
       18.05         7.00         6.02         5.42         3.78        66.51 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7811 
        9.96         0.95         0.39         0.39        17.79         8.75 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7582 TCGA-60-2695 
       27.45         0.10         2.04         1.02         0.85        15.55 
TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       12.23        96.82        37.94        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
        9.01        47.87        16.83        35.34        38.83         3.16 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2744 
       24.10        22.78        23.64        11.77        43.10         0.99 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 TCGA-66-2770 
        2.01         0.99        20.98         0.99         2.01        23.01 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
        2.01        12.03        24.95        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
       30.02         4.01        49.05         2.73         6.64        29.56 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7463 
       11.18        89.95        20.78         0.49        70.09        46.78 
TCGA-77-7465 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       15.75        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        9.63        54.41         0.33         0.36         0.79         1.12 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 
        1.41         0.46         1.18         1.35         0.59         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8022 
        3.48         5.26        39.88        58.42         3.78         7.33 
TCGA-98-8023 
       10.13 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.10 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           122.43            173.79 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            13.58             15.55 
[1] "0.0 - 122.4 (13.6)" "0.1 - 173.8 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-98-8022        TCGA-98-8023 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     29   96
  9P LOSS WILD-TYPE   51  131
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              29                51
  MALE                96               131
D56V4, continuous
D56V5, multiclass
D56V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              30                40
  T2              73               114
  T3              13                19
  T4               9                 9
D56V7, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0              81               110
  N1              29                55
  N2              13                13
  N3               2                 3
D56V8, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0             109               162
  M1               1                 3
  MX              12                14
D56V9, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  I                64                92
  II               29                52
  III              28                34
  IV                1                 3
D56V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      5  120
  9P LOSS WILD-TYPE    6  176
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                5                 6
  YES             120               176
D56V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     10  115
  9P LOSS WILD-TYPE   19  163
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               10                19
  YES             115               163

Clustering(57) Variable = 9q loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    46  27
  9Q LOSS WILD-TYPE 126  91
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               73               217 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               27                91 
$`9Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3419 TCGA-18-4083 TCGA-21-1070 TCGA-21-1075 
       12.16        79.46         1.61         6.15       115.59        70.13 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-22-1012 TCGA-22-4591 
      119.80         8.78        31.63        21.57        14.10        20.45 
TCGA-22-4607 TCGA-22-5478 TCGA-33-4547 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 
       19.30         0.79        43.10        54.44        19.76        26.99 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5928 TCGA-34-5929 TCGA-37-4135 TCGA-37-4141 
       31.23        50.24         5.52         4.96         6.81         0.39 
TCGA-39-5034 TCGA-39-5035 TCGA-43-2576 TCGA-43-3920 TCGA-43-7656 TCGA-43-7657 
       36.39        15.58        18.28        18.84         6.97         1.58 
TCGA-43-8115 TCGA-43-8116 TCGA-46-6026 TCGA-51-4081 TCGA-56-7223 TCGA-56-7579 
        6.64         6.35         0.59         2.07         0.99         1.45 
TCGA-56-7580 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2719 TCGA-60-2721 
        1.32         3.58        10.22        82.19        30.61        26.07 
TCGA-60-2724 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
        1.22         2.01        21.07         1.02         0.92         0.99 
TCGA-66-2763 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2781 
        0.99         7.07        19.00         3.02        19.00         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-77-6842 
       12.00         1.94         4.04        22.98        10.06        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-8130 TCGA-77-8139 TCGA-77-8140 
       73.08        75.09        23.28        82.92       104.09        11.54 
TCGA-77-8143 TCGA-77-8154 TCGA-85-7697 TCGA-90-7766 TCGA-94-7033 TCGA-94-7557 
       26.40        35.90         0.33         1.55         2.86         0.16 
TCGA-96-7544 
       39.88 

$`9Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       59.51        28.34        24.92        43.76         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 
       15.55        31.69       122.43         9.30        88.08        29.85 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
        1.74        27.02        48.82        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 
        0.56        38.17        34.75        13.12        32.02         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 
      173.79       103.53       141.34        14.07        10.98         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       61.61        31.50        28.96        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-7107 
        9.04        10.82         7.73        14.07        22.95         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 
       27.35        35.64         0.79        17.88        18.08        13.12 
TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7658 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
        5.42         3.78        66.51         9.96         0.95         0.39 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7582 
        0.10         2.04         1.02         0.99         0.43         0.85 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       15.55        12.23        96.82        37.94        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
       35.34        38.83         3.16        24.10        22.78        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2757 
       11.77        16.96        43.10         0.99         2.01         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2780 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       23.01         2.01        12.03        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
        2.73         6.64        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8144 
       37.81        12.59        53.92        39.09        17.69        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        6.97         9.63        54.41         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.35         2.93         0.59         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        5.26         2.27        58.42         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.16              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           119.80            173.79 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            12.00             15.55 
[1] "0.2 - 119.8 (12.0)" "0.0 - 173.8 (15.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     18   60
  9Q LOSS WILD-TYPE   62  167
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              18                62
  MALE                60               167
D57V4, continuous
D57V5, multiclass
D57V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              18                52
  T2              45               142
  T3              12                20
  T4               3                15
D57V7, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0              47               144
  N1              24                60
  N2               5                21
  N3               2                 3
D57V8, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0              68               203
  M1               1                 3
  MX               9                17
D57V9, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  I                35               121
  II               25                56
  III              16                46
  IV                1                 3
D57V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      3   75
  9Q LOSS WILD-TYPE    8  221
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                3                 8
  YES              75               221
D57V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      8   70
  9Q LOSS WILD-TYPE   21  208
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                8                21
  YES              70               208

Clustering(58) Variable = 10p loss mutation analysis
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    41  20
  10P LOSS WILD-TYPE 131  98
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                61                229 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                20                 98 
$`10P LOSS MUTATED`
TCGA-18-3411 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 
       46.52        43.76         6.15         3.02        27.16        99.16 
TCGA-21-1075 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5786 TCGA-22-1016 
       70.13        31.69       122.43       119.80        21.57        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4609 TCGA-22-4613 TCGA-22-5477 
       20.45        35.08        38.17         9.53        11.77        44.22 
TCGA-22-5483 TCGA-33-4538 TCGA-37-3789 TCGA-37-4135 TCGA-37-5819 TCGA-39-5027 
       18.84        97.94         0.43         6.81         3.39        60.76 
TCGA-43-2578 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 TCGA-51-4080 TCGA-51-4081 
       18.08        18.84         7.00         2.79         0.39         2.07 
TCGA-52-7622 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-60-2710 TCGA-60-2719 
       17.79         0.99         1.32         0.85        55.40        30.61 
TCGA-66-2727 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 
       16.96         2.01         0.99        20.98        25.02        23.01 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2800 
       25.97        40.01         4.04         5.03        10.06        49.05 
TCGA-77-6845 TCGA-77-7138 TCGA-77-8140 TCGA-77-8144 TCGA-85-6798 TCGA-85-7696 
       23.28        11.18        11.54        27.39         1.12         0.59 
TCGA-85-7699 TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-94-7033 
        0.03         1.25         0.53         1.41         0.46         2.86 
TCGA-98-8021 
       13.58 

$`10P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4086 
       13.02        59.51        28.34        24.92         1.61         2.79 
TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       90.51       115.59        46.88        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 
        9.30         8.78        31.63        88.08        29.85        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 
       14.10        48.82        48.33        24.13         0.56        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        32.02        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         1.08         3.95         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.46         7.82         0.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       18.28        13.12        11.57         8.48        18.05         6.02 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-52-7809 
        6.35         9.96         0.95         0.59         0.39         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.99         0.43         1.45        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       38.83         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        1.02         0.92         0.99         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         7.07        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 
       22.98        22.98        30.02        54.08         4.01         2.73 
TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 
        6.64        29.56        73.08        75.09        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       15.75        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       17.69       104.09        26.40         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 
       35.90         0.33         0.36         0.79         0.33         1.61 
TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        1.15         0.85         1.97         1.18         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8022 
        2.27         0.16        39.88        58.42         3.78         7.33 
TCGA-98-8023 
       10.13 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.03               0.10 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            122.43             173.79 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             16.96              14.60 
[1] "0.0 - 122.4 (17.0)" "0.1 - 173.8 (14.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     13   53
  10P LOSS WILD-TYPE   67  174
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               13                 67
  MALE                 53                174
D58V4, continuous
D58V5, multiclass
D58V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1               16                 54
  T2               37                150
  T3                8                 24
  T4                5                 13
D58V7, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0               46                145
  N1               12                 72
  N2                6                 20
  N3                2                  3
D58V8, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0               61                210
  M1                0                  4
  MX                3                 23
D58V9, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  I                 36                120
  II                12                 69
  III               18                 44
  IV                 0                  4
D58V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      0   66
  10P LOSS WILD-TYPE   11  230
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 0                 11
  YES               66                230
D58V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      5   61
  10P LOSS WILD-TYPE   24  217
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 5                 24
  YES               61                217

Clustering(59) Variable = 10q loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    42  19
  10Q LOSS WILD-TYPE 130  99
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                61                229 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                19                 99 
$`10Q LOSS MUTATED`
TCGA-18-3411 TCGA-18-4083 TCGA-18-5592 TCGA-21-1072 TCGA-21-1075 TCGA-21-1082 
       46.52         6.15         3.02        99.16        70.13       119.80 
TCGA-21-5783 TCGA-22-0944 TCGA-22-4593 TCGA-22-4599 TCGA-22-4609 TCGA-22-5477 
       88.08         7.33        35.08        38.17         9.53        44.22 
TCGA-22-5483 TCGA-33-4538 TCGA-34-5927 TCGA-34-5929 TCGA-37-4135 TCGA-37-5819 
       18.84        97.94        22.95         4.96         6.81         3.39 
TCGA-39-5027 TCGA-39-5036 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6770 
       60.76        35.64        18.08        11.57        18.84         2.79 
TCGA-43-7658 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-56-1622 
       66.51         0.39         0.39         2.07        17.79        28.93 
TCGA-56-7221 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-60-2710 TCGA-60-2719 
        0.99         0.99         1.32         0.85        55.40        30.61 
TCGA-66-2727 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 
       16.96         2.01         0.99        20.98        25.02        23.01 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 
        1.94        25.97        40.01         4.04        30.02        10.06 
TCGA-66-2800 TCGA-77-7138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8148 TCGA-85-6798 
       49.05        11.18        11.54        26.40         9.63         1.12 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 TCGA-94-7033 
        1.61         0.03         1.25         0.53         1.41         2.86 
TCGA-98-8021 
       13.58 

$`10Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 
       34.78        15.55        31.69       122.43         9.30         8.78 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 
       31.63        29.85        21.57        10.82        19.99        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 
       20.45        48.33        24.13         0.56        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 
        9.04        10.82         7.73        14.07         5.52         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         0.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       36.39        15.58         0.79        17.88        18.28        13.12 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         7.00         6.02         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        6.97         1.58         6.64         6.35         9.96         0.95 
TCGA-46-6026 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 
        0.59         5.85         8.75        27.45         0.10         2.04 
TCGA-56-6546 TCGA-56-7222 TCGA-56-7579 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.02         0.43         1.45        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       38.83         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        1.02         0.92         0.99         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         7.07        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2788 
       19.00        12.03         3.98        12.00        24.95        22.98 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 
       22.98         5.03        54.08         4.01         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 
       29.56        73.08        75.09        23.28        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       15.75        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 
       17.69       104.09        27.39         6.97        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 
        0.33         0.36         0.79         0.59         0.33         1.15 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.85         1.97         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8022 
        2.27         0.16        39.88        58.42         3.78         7.33 
TCGA-98-8023 
       10.13 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.03               0.10 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            119.80             173.79 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             11.57              15.55 
[1] "0.0 - 119.8 (11.6)" "0.1 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     16   50
  10Q LOSS WILD-TYPE   64  177
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               16                 64
  MALE                 50                177
D59V4, continuous
D59V5, multiclass
D59V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1               17                 53
  T2               38                149
  T3                7                 25
  T4                4                 14
D59V7, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0               45                146
  N1               14                 70
  N2                6                 20
  N3                1                  4
D59V8, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0               60                211
  M1                0                  4
  MX                3                 23
D59V9, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  I                 37                119
  II                11                 70
  III               17                 45
  IV                 0                  4
D59V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      0   66
  10Q LOSS WILD-TYPE   11  230
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 0                 11
  YES               66                230
D59V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      4   62
  10Q LOSS WILD-TYPE   25  216
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 4                 25
  YES               62                216

Clustering(60) Variable = 11p loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    29  18
  11P LOSS WILD-TYPE 143 100
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                47                243 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                18                100 
$`11P LOSS MUTATED`
TCGA-18-3416 TCGA-18-3421 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       28.34        43.76       122.43       119.80         8.78        31.63 
TCGA-21-5786 TCGA-22-4593 TCGA-22-5471 TCGA-22-5477 TCGA-22-5481 TCGA-22-5483 
       21.57        35.08        31.69        44.22        79.20        18.84 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4587 TCGA-33-6737 TCGA-34-2600 TCGA-34-5928 
       97.94        43.10        54.44        19.76        61.61         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5035 
        4.96         0.43         8.09         6.81         0.39        15.58 
TCGA-43-6143 TCGA-43-7657 TCGA-46-3768 TCGA-56-7579 TCGA-56-7580 TCGA-60-2714 
        7.00         1.58         9.96         1.45         1.32        16.83 
TCGA-60-2721 TCGA-66-2742 TCGA-66-2758 TCGA-66-2759 TCGA-66-2768 TCGA-66-2771 
       26.07        21.07        20.98        25.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-77-6844 TCGA-77-7139 TCGA-77-7141 TCGA-77-8133 
       12.03        12.00        75.09        89.95         0.49        53.92 
TCGA-77-8140 TCGA-77-8148 TCGA-77-8150 TCGA-85-7699 TCGA-85-7843 
       11.54         9.63        54.41         0.03         1.15 

$`11P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        59.51        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
        9.30        88.08        29.85        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       48.82        20.45        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60         0.79        54.28        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
      114.05       173.79       103.53       141.34        14.07        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 
       14.07        22.95         1.08         3.95         0.39         6.54 
TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.46         7.82         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        36.39        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       18.28        18.08        13.12        11.57        18.84         8.48 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
       66.51         6.64         6.35         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        0.99         0.85        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       55.40        29.19         9.01        47.87        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10         2.01         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99         0.99         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         7.07        23.01         3.02         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       19.00         3.98        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
       54.08         4.01        49.05         2.73         6.64        29.56 
TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 
       73.08        23.28        11.18        20.78        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
      106.95         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 
       12.59        39.09        17.69       104.09        26.40        27.39 
TCGA-77-8145 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        6.97        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        0.59         0.33         1.61         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        2.27         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.03               0.10 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            122.43             173.79 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             19.00              14.07 
[1] "0.0 - 122.4 (19.0)" "0.1 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     11   36
  11P LOSS WILD-TYPE   69  191
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               11                 69
  MALE                 36                191
D60V4, continuous
D60V5, multiclass
D60V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1                9                 61
  T2               31                156
  T3                6                 26
  T4                1                 17
D60V7, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               27                164
  N1               17                 67
  N2                3                 23
  N3                0                  5
D60V8, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               43                228
  M1                1                  3
  MX                2                 24
D60V9, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  I                 23                133
  II                13                 68
  III               10                 52
  IV                 1                  3
D60V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      3   44
  11P LOSS WILD-TYPE    8  252
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 3                  8
  YES               44                252
D60V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      5   42
  11P LOSS WILD-TYPE   24  236
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 5                 24
  YES               42                236

Clustering(61) Variable = 11q loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    20  10
  11Q LOSS WILD-TYPE 152 108
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                30                260 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                10                108 
$`11Q LOSS MUTATED`
TCGA-18-3416 TCGA-18-3421 TCGA-21-1083 TCGA-21-5783 TCGA-22-1012 TCGA-22-4593 
       28.34        43.76         8.78        88.08        14.10        35.08 
TCGA-34-2600 TCGA-34-5239 TCGA-34-5928 TCGA-37-3789 TCGA-37-4130 TCGA-43-7657 
       61.61        10.82         5.52         0.43         8.09         1.58 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-56-7223 TCGA-56-7580 
        6.35         9.96         0.59         0.39         0.99         1.32 
TCGA-66-2758 TCGA-66-2768 TCGA-66-2790 TCGA-77-7139 TCGA-77-8130 TCGA-77-8133 
       20.98         2.01        22.98        89.95        82.92        53.92 
TCGA-77-8143 TCGA-77-8148 TCGA-77-8150 TCGA-85-6798 TCGA-85-7699 TCGA-90-7766 
       26.40         9.63        54.41         1.12         0.03         1.55 

$`11Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        59.51        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
      122.43         9.30       119.80        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 
        1.74        27.02        48.82        20.45        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       32.68         9.04         7.73        14.07        22.95         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 
        1.08         3.95         0.39         6.54         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-46-6025 TCGA-51-4080 
        3.78         6.97        66.51         6.64         0.95         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        2.07        17.79         5.85         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.43         1.45 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.85        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        82.19        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       29.19         9.01        47.87        16.83        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.64        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 
       25.02         0.99         2.01         1.02         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 
        4.01        49.05         2.73         6.64        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        11.18        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       70.09       106.95         0.16        46.78        15.75        37.81 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       12.59        39.09        17.69       104.09        11.54        27.39 
TCGA-77-8145 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 
        6.97        35.90         0.33         0.36         0.79         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        0.33         1.61         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7767 
        0.53         1.41         0.46         1.18         1.35         2.93 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.03               0.10 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             89.95             173.79 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             9.795             15.565 
[1] "0.0 - 90.0 (9.8)"   "0.1 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      6   24
  11Q LOSS WILD-TYPE   74  203
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE                6                 74
  MALE                 24                203
D61V4, continuous
D61V5, multiclass
D61V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                7                 63
  T2               16                171
  T3                5                 27
  T4                2                 16
D61V7, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               16                175
  N1               13                 71
  N2                1                 25
  N3                0                  5
D61V8, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               25                246
  M1                0                  4
  MX                3                 23
D61V9, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  I                 13                143
  II                 9                 72
  III                8                 54
  IV                 0                  4
D61V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      2   28
  11Q LOSS WILD-TYPE    9  268
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 2                  9
  YES               28                268
D61V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      0   30
  11Q LOSS WILD-TYPE   29  248
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 0                 29
  YES               30                248

Clustering(62) Variable = 12p loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED     2   3
  12P LOSS WILD-TYPE 170 115
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                285 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 3                115 
$`12P LOSS MUTATED`
TCGA-22-1016 TCGA-33-4587 TCGA-37-4141 TCGA-56-7579 TCGA-77-8150 
       27.02        54.44         0.39         1.45        54.41 

$`12P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         7.82         6.81         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       11.57        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.99         1.32         0.85        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         2.73         6.64        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       70.09       106.95         0.16        46.78        15.75        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 
       11.54        26.40        27.39         6.97         9.63        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.53         1.41         0.46         1.18         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        2.93         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        2.27         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.39               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             54.44             173.79 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             27.02              14.60 
[1] "0.4 - 54.4 (27.0)"  "0.0 - 173.8 (14.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2    3
  12P LOSS WILD-TYPE   78  224
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                2                 78
  MALE                  3                224
D62V4, continuous
D62V5, multiclass
D62V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                1                 69
  T2                2                185
  T3                2                 30
  T4                0                 18
D62V7, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                3                188
  N1                2                 82
  N2                0                 26
  N3                0                  5
D62V8, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0                4                267
  M1                0                  4
  MX                1                 25
D62V9, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  I                  3                153
  II                 0                 81
  III                2                 60
  IV                 0                  4
D62V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0    5
  12P LOSS WILD-TYPE   11  291
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 0                 11
  YES                5                291
D62V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      1    4
  12P LOSS WILD-TYPE   28  274
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 1                 28
  YES                4                274

Clustering(63) Variable = 12q loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED     2   1
  12Q LOSS WILD-TYPE 170 117
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 3                287 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 1                117 
$`12Q LOSS MUTATED`
TCGA-33-4587 TCGA-37-4141 TCGA-85-7696 
       54.44         0.39         0.59 

$`12Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       14.07        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        6.54         8.09         7.46         7.82         6.81         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         6.64         6.35         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
       54.08         4.01        49.05         2.73         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       15.75        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        1.12         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 
        1.35         1.55         2.93         0.59         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.27         2.86         0.16        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78        13.58         7.33        10.13 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.39               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             54.44             173.79 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.59              14.93 
[1] "0.4 - 54.4 (0.6)"   "0.0 - 173.8 (14.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2    2
  12Q LOSS WILD-TYPE   78  225
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                2                 78
  MALE                  2                225
D63V4, continuous
D63V5, multiclass
D63V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                3                 67
  T2                1                186
  T3                0                 32
  T4                0                 18
D63V7, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                4                187
  N1                0                 84
  N2                0                 26
  N3                0                  5
D63V8, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                3                268
  M1                0                  4
  MX                1                 25
D63V9, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  I                  4                152
  II                 0                 81
  III                0                 62
  IV                 0                  4
D63V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      0    4
  12Q LOSS WILD-TYPE   11  292
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 0                 11
  YES                4                292
D63V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      1    3
  12Q LOSS WILD-TYPE   28  275
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 1                 28
  YES                3                275

Clustering(64) Variable = 13q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    69  43
  13Q LOSS WILD-TYPE 103  75
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               112                178 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                 75 
$`13Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
        4.80        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1080 
       90.51       115.59        46.88        99.16        70.13       122.43 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-4591 TCGA-22-4601 TCGA-22-4604 
       21.57        10.82        19.99        20.45        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5477 TCGA-22-5478 TCGA-22-5481 
       19.30        11.77        64.90        44.22         0.79        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 
       11.74        18.84        30.08        56.32        16.60       114.05 
TCGA-33-4538 TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 TCGA-34-2600 TCGA-34-2609 
       97.94       103.53        54.44        19.76        61.61        31.23 
TCGA-34-5231 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 
       50.24         5.52         4.96         1.08         7.82         6.81 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5029 TCGA-39-5036 TCGA-43-2578 TCGA-43-2581 
        3.39        74.07        24.33        35.64        18.08        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6770 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 
       11.57        18.84         2.79         6.97        66.51         6.64 
TCGA-43-8116 TCGA-51-4079 TCGA-52-7812 TCGA-56-1622 TCGA-56-7222 TCGA-56-7579 
        6.35         0.39        27.45        28.93         0.43         1.45 
TCGA-60-2696 TCGA-60-2706 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
        3.58        82.19        68.45        55.40        29.19        47.87 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2722 TCGA-60-2724 TCGA-66-2727 TCGA-66-2754 
       16.83        30.61        24.10         1.22        16.96         2.01 
TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2768 TCGA-66-2771 TCGA-66-2778 
        0.99        25.02         0.99         2.01        19.00        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2790 
       12.03        12.00        24.95         1.94        25.97        22.98 
TCGA-66-2792 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6844 
       30.02        49.05         2.73         6.64        29.56        75.09 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-8128 TCGA-77-8130 
       89.95        20.78        70.09       106.95        37.81        82.92 
TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8150 TCGA-77-8154 TCGA-85-7697 
      104.09        26.40        27.39        54.41        35.90         0.33 
TCGA-85-7698 TCGA-85-7844 TCGA-85-8070 TCGA-85-8071 TCGA-90-7766 TCGA-90-7767 
        1.61         1.25         1.41         0.46         1.55         2.93 
TCGA-92-8063 TCGA-96-7544 TCGA-98-8021 TCGA-98-8022 
        4.01        39.88        13.58         7.33 

$`13Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3417 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1076 
       13.02        24.92         2.79         3.02        27.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       34.78        15.55        31.69         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       31.63        88.08        29.85         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4605 TCGA-22-4609 
       48.33        24.13         0.56        38.17        32.02         9.53 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 TCGA-22-5489 
       31.69        63.52        14.60        54.28        71.34        62.86 
TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       82.98        43.10       173.79       141.34        14.07        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5232 
       26.99         2.63        31.50        28.96        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        47.80        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
       60.76         1.71         1.94        27.35        36.39        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
        0.79        17.88        18.28         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-46-3768 TCGA-46-6025 
        6.02         5.42         3.78         1.58         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.59         0.39         2.07        17.79         5.85         8.75 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7580 
        0.10         2.04         1.02         0.99         0.99         1.32 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
        0.85        15.55        12.23        10.22        96.82        37.94 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
       21.70        49.48         9.01        35.34        38.83         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 
       26.07        22.78        23.64        11.77        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         1.02         0.92         0.99        20.98 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        2.01         1.02         2.01         7.07        23.01         3.02 
TCGA-66-2777 TCGA-66-2781 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        2.01         3.98        40.01        22.98         4.04         5.03 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 
       10.06        54.08         4.01        73.08        23.28        11.18 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8131 
        0.49        42.25         0.16        46.78        15.75        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8145 TCGA-77-8148 
       53.92        39.09        17.69        11.54         6.97         9.63 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 
        0.33         0.36         0.79         1.12         0.59         0.03 
TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-90-6837 
        1.15         0.85         1.97         0.53         1.18         1.35 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        0.59         2.70         3.48         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7545 TCGA-98-7454 TCGA-98-8023 
        0.16        58.42         3.78        10.13 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.33               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            122.43             173.79 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            20.615             11.080 
[1] "0.3 - 122.4 (20.6)" "0.0 - 173.8 (11.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     33   83
  13Q LOSS WILD-TYPE   47  144
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               33                 47
  MALE                 83                144
D64V4, continuous
D64V5, multiclass
D64V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               26                 44
  T2               72                115
  T3               11                 21
  T4                7                 11
D64V7, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0               64                127
  N1               36                 48
  N2               14                 12
  N3                2                  3
D64V8, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0              105                166
  M1                0                  4
  MX                9                 17
D64V9, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  I                 49                107
  II                37                 44
  III               29                 33
  IV                 0                  4
D64V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      5  111
  13Q LOSS WILD-TYPE    6  185
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 5                  6
  YES              111                185
D64V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     13  103
  13Q LOSS WILD-TYPE   16  175
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                13                 16
  YES              103                175

Clustering(65) Variable = 14q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    28  24
  14Q LOSS WILD-TYPE 144  94
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                52                238 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                24                 94 
$`14Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-4083 TCGA-21-1083 TCGA-22-0940 TCGA-22-1012 TCGA-22-4601 
        4.80         6.15         8.78        19.99        14.10        34.75 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       63.52        14.60        44.22        71.34        79.20        18.84 
TCGA-22-5491 TCGA-33-4587 TCGA-34-2600 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       56.32        54.44        61.61        22.95         5.52         4.96 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-39-5035 TCGA-43-3394 TCGA-43-6770 
        8.09         7.82         6.81        15.58        11.57         2.79 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 
        6.97         1.58        66.51         6.35         9.96         0.59 
TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-66-2727 TCGA-66-2754 TCGA-66-2755 
       55.40         9.01        47.87        16.96         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2770 TCGA-66-2773 TCGA-66-2786 TCGA-66-2795 
        0.99        20.98        23.01         3.02        25.97         4.01 
TCGA-77-6843 TCGA-77-7139 TCGA-77-7338 TCGA-77-8140 TCGA-85-6798 TCGA-85-8070 
       73.08        89.95         0.16        11.54         1.12         1.41 
TCGA-90-7766 TCGA-90-7767 TCGA-94-7557 TCGA-98-8021 
        1.55         2.93         0.16        13.58 

$`14Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30       119.80        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       21.57        10.82         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
        1.74        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 TCGA-22-5479 
        9.53        11.77        31.69        64.90         0.79        54.28 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        62.86        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76        26.99         2.63        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       10.82         7.73        14.07         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        0.39         6.54         7.46         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 
        1.71        24.33         1.94        27.35        36.39        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
        0.79        17.88        18.28        18.08        13.12        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
        8.48        18.05         7.00         6.02         5.42         3.78 
TCGA-43-8115 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        6.64         0.95         0.39         0.39         2.07        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        5.85         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        0.85        15.55         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
       37.94        82.19        21.70        68.45        49.48        29.19 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       24.10        22.78         1.22        23.64        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 
        2.01        21.07         0.99         1.02         0.99        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
        5.03        30.02        10.06        54.08        49.05         2.73 
TCGA-68-7756 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        6.64        29.56        75.09        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 
        0.49        42.25        70.09       106.95        46.78        15.75 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
       35.90         0.33         0.36         0.79         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 
        0.53         0.46         1.18         1.35         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        3.48         4.01         5.26         2.27         2.86        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78         7.33        10.13 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.16               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             89.95             173.79 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            10.750             16.715 
[1] "0.2 - 90.0 (10.8)"  "0.0 - 173.8 (16.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     21   33
  14Q LOSS WILD-TYPE   59  194
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               21                 59
  MALE                 33                194
D65V4, continuous
D65V5, multiclass
D65V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1               21                 49
  T2               26                161
  T3                4                 28
  T4                3                 15
D65V7, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0               37                154
  N1               16                 68
  N2                1                 25
  N3                0                  5
D65V8, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0               48                223
  M1                0                  4
  MX                6                 20
D65V9, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  I                 33                123
  II                13                 68
  III                8                 54
  IV                 0                  4
D65V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      3   51
  14Q LOSS WILD-TYPE    8  245
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 3                  8
  YES               51                245
D65V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      5   49
  14Q LOSS WILD-TYPE   24  229
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 5                 24
  YES               49                229

Clustering(66) Variable = 15q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    19  16
  15Q LOSS WILD-TYPE 153 102
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                35                255 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                16                102 
$`15Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3416 TCGA-21-1072 TCGA-21-1080 TCGA-22-1012 TCGA-22-4591 
       12.16        28.34        99.16       122.43        14.10        20.45 
TCGA-22-4594 TCGA-22-4599 TCGA-22-5480 TCGA-33-4587 TCGA-34-2600 TCGA-34-5929 
       48.33        38.17        71.34        54.44        61.61         4.96 
TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5029 TCGA-39-5034 TCGA-43-2578 
        7.82         0.39         3.39        24.33        36.39        18.08 
TCGA-43-2581 TCGA-46-3768 TCGA-46-6026 TCGA-56-7223 TCGA-60-2712 TCGA-60-2714 
       13.12         9.96         0.59         0.99         9.01        16.83 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2756 TCGA-66-2766 TCGA-66-2791 TCGA-66-2794 
       21.07         2.01         0.99         1.02         5.03        54.08 
TCGA-66-2800 TCGA-77-6842 TCGA-77-7337 TCGA-77-8130 TCGA-92-8065 
       49.05        29.56       106.95        82.92         2.27 

$`15Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 
       70.13        60.89        34.78        15.55        31.69         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.57 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 
        1.74        27.02        48.82        35.08        24.13         0.56 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       54.28        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 
      173.79       103.53       141.34        14.07        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-39-5011 
        0.39         6.54         8.09         7.46         6.81        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.71         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       17.88        18.28        11.57        18.84         8.48        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
        7.00         6.02         2.79         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-51-4079 
        1.58        66.51         6.64         6.35         0.95         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1.45         1.32         0.85        15.55         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        82.19        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       49.48        55.40        29.19        47.87        35.34        38.83 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 
       23.64        11.77        16.96        43.10         2.01         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        1.02         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        2.01         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 
       22.98        30.02        10.06         4.01         2.73         6.64 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        0.49        42.25        70.09         0.16        46.78        15.75 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       37.81        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.55         2.93         0.59         2.70         3.48         4.01 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        5.26         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.39               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            122.43             173.79 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             18.08              14.07 
[1] "0.4 - 122.4 (18.1)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     14   22
  15Q LOSS WILD-TYPE   66  205
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               14                 66
  MALE                 22                205
D66V4, continuous
D66V5, multiclass
D66V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1                6                 64
  T2               19                168
  T3                7                 25
  T4                4                 14
D66V7, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0               16                175
  N1               12                 72
  N2                7                 19
  N3                1                  4
D66V8, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               32                239
  M1                1                  3
  MX                3                 23
D66V9, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  I                 11                145
  II                10                 71
  III               14                 48
  IV                 1                  3
D66V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      1   35
  15Q LOSS WILD-TYPE   10  261
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 1                 10
  YES               35                261
D66V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      3   33
  15Q LOSS WILD-TYPE   26  245
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 3                 26
  YES               33                245

Clustering(67) Variable = 16p loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    29  14
  16P LOSS WILD-TYPE 143 104
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                43                247 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                14                104 
$`16P LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-4083 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 
        4.80        59.51         6.15         3.02       115.59        70.13 
TCGA-21-5786 TCGA-22-1012 TCGA-22-4613 TCGA-22-5480 TCGA-22-5482 TCGA-33-4533 
       21.57        14.10        11.77        71.34        11.74       114.05 
TCGA-33-6737 TCGA-34-5927 TCGA-34-5928 TCGA-39-5021 TCGA-43-3394 TCGA-43-7656 
       19.76        22.95         5.52        68.58        11.57         6.97 
TCGA-43-7658 TCGA-43-8116 TCGA-60-2719 TCGA-60-2724 TCGA-66-2753 TCGA-66-2755 
       66.51         6.35        30.61         1.22         1.02         0.92 
TCGA-66-2758 TCGA-66-2781 TCGA-66-2785 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 
       20.98         3.98         1.94        30.02        10.06        49.05 
TCGA-77-6842 TCGA-77-7139 TCGA-77-7142 TCGA-77-7463 TCGA-77-8140 TCGA-77-8143 
       29.56        89.95        42.25        46.78        11.54        26.40 
TCGA-77-8154 TCGA-85-7699 TCGA-85-8052 TCGA-85-8070 TCGA-90-7767 TCGA-94-7557 
       35.90         0.03         0.53         1.41         2.93         0.16 
TCGA-96-7544 
       39.88 

$`16P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
       90.51        27.16        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       31.63        88.08        29.85        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 
       14.93         4.31        64.21         1.74        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
       34.75        13.12        32.02        19.30         9.53        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       79.20        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       82.98        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       14.07        54.44        10.98        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5929 
       32.68         9.04        10.82         7.73        14.07         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
        0.79        17.88        18.28        18.08        13.12        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        3.78         1.58         6.64         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 
        0.43         0.99         1.45         1.32         0.85        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       47.87        16.83        35.34        38.83         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       24.10        22.78        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
        2.01        21.07         0.99         2.01         0.99         0.99 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.03        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 
        4.04        22.98         5.03        54.08         4.01         2.73 
TCGA-68-7756 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        6.64        73.08        75.09        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8128 
        0.49        70.09       106.95         0.16        15.75        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6560 
       27.39         6.97         9.63        54.41         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
        0.79         1.12         0.59         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.25         0.85         1.97         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        1.55         0.59         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        2.27         2.86        58.42         3.78        13.58         7.33 
TCGA-98-8023 
       10.13 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.03               0.10 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            115.59             173.79 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             14.10              14.93 
[1] "0.0 - 115.6 (14.1)" "0.1 - 173.8 (14.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     11   34
  16P LOSS WILD-TYPE   69  193
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               11                 69
  MALE                 34                193
D67V4, continuous
D67V5, multiclass
D67V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                8                 62
  T2               29                158
  T3                5                 27
  T4                3                 15
D67V7, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0               31                160
  N1               12                 72
  N2                2                 24
  N3                0                  5
D67V8, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0               42                229
  M1                0                  4
  MX                3                 23
D67V9, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  I                 25                131
  II                11                 70
  III                9                 53
  IV                 0                  4
D67V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      1   44
  16P LOSS WILD-TYPE   10  252
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 1                 10
  YES               44                252
D67V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      2   43
  16P LOSS WILD-TYPE   27  235
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 2                 27
  YES               43                235

Clustering(68) Variable = 16q loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    36  18
  16Q LOSS WILD-TYPE 136 100
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                54                236 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                18                100 
$`16Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-5592 
        4.80        59.51        28.34         1.61         6.15         3.02 
TCGA-21-1070 TCGA-21-1075 TCGA-22-1012 TCGA-22-5473 TCGA-22-5480 TCGA-22-5481 
      115.59        70.13        14.10        63.52        71.34        79.20 
TCGA-22-5482 TCGA-22-5489 TCGA-33-4533 TCGA-33-6737 TCGA-34-5231 TCGA-34-5927 
       11.74        62.86       114.05        19.76        50.24        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-7658 
        5.52         4.96        18.08        11.57        18.84        66.51 
TCGA-43-8116 TCGA-46-6026 TCGA-56-7221 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
        6.35         0.59         0.99        55.40        29.19        47.87 
TCGA-60-2719 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
       30.61         1.02         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2778 TCGA-66-2782 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 
        0.99        19.00        12.00         4.04        30.02        10.06 
TCGA-66-2800 TCGA-77-6842 TCGA-77-7139 TCGA-77-7142 TCGA-77-7463 TCGA-77-8140 
       49.05        29.56        89.95        42.25        46.78        11.54 
TCGA-77-8143 TCGA-77-8150 TCGA-85-7699 TCGA-85-8071 TCGA-90-7767 TCGA-92-8065 
       26.40        54.41         0.03         0.46         2.93         2.27 

$`16Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       13.02        24.92        43.76         2.79        90.51        27.16 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
        4.31        64.21         1.74        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5483 
       64.90        14.60        44.22         0.79        54.28        18.84 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       30.08        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       31.23        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       14.07         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       15.58        35.64         0.79        17.88        18.28        13.12 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 
        3.78         6.97         1.58         6.64         9.96         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39         2.07        17.79         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 
       27.45        28.93         0.10         2.04         1.02         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
        0.99         1.45         1.32         0.85        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       68.45        49.48         9.01        16.83        35.34        38.83 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        2.01         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 
        7.07        23.01        19.00         3.02         2.01        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 
       22.98         5.03        54.08         4.01         2.73         6.64 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
       70.09       106.95         0.16        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 
       12.59        53.92        39.09        17.69       104.09        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        6.97         9.63        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         0.33         1.61         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-90-6837 
        0.85         1.97         0.53         1.41         1.18         1.35 
TCGA-90-7766 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        1.55         0.59         2.70         3.48         4.01         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.03               0.10 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            115.59             173.79 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            19.380             13.825 
[1] "0.0 - 115.6 (19.4)" "0.1 - 173.8 (13.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     19   38
  16Q LOSS WILD-TYPE   61  189
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               19                 61
  MALE                 38                189
D68V4, continuous
D68V5, multiclass
D68V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               12                 58
  T2               34                153
  T3                8                 24
  T4                3                 15
D68V7, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0               34                157
  N1               18                 66
  N2                3                 23
  N3                2                  3
D68V8, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0               54                217
  M1                0                  4
  MX                2                 24
D68V9, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  I                 26                130
  II                17                 64
  III               13                 49
  IV                 0                  4
D68V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3   54
  16Q LOSS WILD-TYPE    8  242
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 3                  8
  YES               54                242
D68V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      4   53
  16Q LOSS WILD-TYPE   25  225
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 4                 25
  YES               53                225

Clustering(69) Variable = 17p loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    64  42
  17P LOSS WILD-TYPE 108  76
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               106                184 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                42                 76 
$`17P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       12.16         4.47        46.52        13.02        59.51        28.34 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4721 TCGA-21-1080 TCGA-21-5782 TCGA-21-5783 
        1.61        43.76        90.51       122.43        31.63        88.08 
TCGA-21-5786 TCGA-22-0944 TCGA-22-4591 TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 
       21.57         7.33        20.45        48.33        38.17        13.12 
TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5480 
       19.30         9.53        64.90        63.52        44.22        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4547 
       79.20        18.84        62.86        56.32        16.60        43.10 
TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2600 TCGA-37-3783 TCGA-37-3789 
       14.07        54.44        26.99        61.61         3.95         0.43 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5034 TCGA-39-5035 
        6.81         0.39         3.39        74.07        36.39        15.58 
TCGA-43-3394 TCGA-43-6143 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
       11.57         7.00         6.97        66.51         6.64         6.35 
TCGA-46-6026 TCGA-51-4080 TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 TCGA-56-7223 
        0.59         0.39        17.79        27.45        28.93         0.99 
TCGA-56-7579 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2710 
        1.45         3.58        10.22        82.19        21.70        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2721 TCGA-60-2722 
       29.19         9.01        47.87        16.83        26.07        24.10 
TCGA-66-2727 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 
       16.96        21.07         1.02         2.01         0.99        25.02 
TCGA-66-2763 TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 TCGA-66-2780 TCGA-66-2783 
        0.99         1.02         2.01        19.00        12.03        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2795 TCGA-77-6844 
        1.94        25.97        22.98         4.04         4.01        75.09 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8130 
       23.28        89.95        70.09       106.95         0.16        82.92 
TCGA-77-8133 TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 TCGA-77-8154 TCGA-85-7696 
       53.92       104.09        11.54         6.97        35.90         0.59 
TCGA-85-7844 TCGA-85-8070 TCGA-90-7766 TCGA-90-7767 TCGA-92-7341 TCGA-92-8063 
        1.25         1.41         1.55         2.93         3.48         4.01 
TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-98-8021 
        2.27         2.86        39.88        13.58 

$`17P LOSS WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-18-4083 
       81.07        79.46         4.80        11.34        24.92         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
        2.79         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 
       70.13        60.89        34.78        15.55        31.69         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 
      119.80         8.78        29.85        10.82        19.99        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4613 
       35.08        24.13         0.56        34.75        32.02        11.77 
TCGA-22-5471 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 TCGA-22-5485 
       31.69        14.60         0.79        54.28        11.74        30.08 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        97.94       173.79       103.53       141.34 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       10.98        19.76         2.63        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-39-5011 
        0.39         6.54         8.09         7.46         7.82        47.80 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       18.28        18.08        13.12        18.84         8.48        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-46-3768 
        6.02         2.79         5.42         3.78         1.58         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 TCGA-52-7811 TCGA-56-5897 
        0.95         0.39         2.07         5.85         8.75         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 TCGA-56-7582 
        2.04         1.02         0.99         0.43         1.32         0.85 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 
       15.55        12.23        96.82        37.94        68.45        49.48 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2723 TCGA-60-2724 
       35.34        38.83        30.61         3.16        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2755 
       23.64        11.77        43.10         2.01         0.99         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2765 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 
        0.99        20.98         2.01         2.01         7.07        23.01 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2787 
        3.02         2.01        19.00         3.98        12.00        40.01 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 
       22.98         5.03        30.02        10.06        54.08        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-7138 TCGA-77-7140 
        2.73         6.64        29.56        73.08        11.18        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8131 
        0.49        42.25        46.78        15.75        37.81        12.59 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 
       39.09        17.69        26.40        27.39         9.63        54.41 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 
        0.33         0.36         0.79         1.12         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 
        0.03         1.15         0.85         1.97         0.53         0.46 
TCGA-85-8072 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 TCGA-92-8064 TCGA-94-7557 
        1.18         1.35         0.59         2.70         5.26         0.16 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78         7.33        10.13 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.16               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            122.43             173.79 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            18.315             12.410 
[1] "0.2 - 122.4 (18.3)" "0.0 - 173.8 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     31   80
  17P LOSS WILD-TYPE   49  147
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               31                 49
  MALE                 80                147
D69V4, continuous
D69V5, multiclass
D69V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               31                 39
  T2               64                123
  T3               11                 21
  T4                5                 13
D69V7, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0               63                128
  N1               32                 52
  N2               14                 12
  N3                2                  3
D69V8, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               95                176
  M1                2                  2
  MX               12                 14
D69V9, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  I                 57                 99
  II                30                 51
  III               22                 40
  IV                 2                  2
D69V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      5  106
  17P LOSS WILD-TYPE    6  190
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 5                  6
  YES              106                190
D69V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     11  100
  17P LOSS WILD-TYPE   18  178
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                11                 18
  YES              100                178

Clustering(70) Variable = 17q loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    12   6
  17Q LOSS WILD-TYPE 160 112
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                18                272 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 6                112 
$`17Q LOSS MUTATED`
TCGA-18-3414 TCGA-18-3415 TCGA-22-5472 TCGA-22-5492 TCGA-34-2600 TCGA-39-5035 
       13.02        59.51        64.90        16.60        61.61        15.58 
TCGA-43-7656 TCGA-60-2696 TCGA-60-2714 TCGA-60-2722 TCGA-66-2771 TCGA-66-2780 
        6.97         3.58        16.83        24.10        19.00        12.03 
TCGA-66-2786 TCGA-77-8139 TCGA-85-7696 TCGA-92-8063 TCGA-92-8065 TCGA-98-8021 
       25.97       104.09         0.59         4.01         2.27        13.58 

$`17Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       11.34        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.69        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        36.39        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       18.28        18.08        13.12        11.57        18.84         8.48 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        1.58        66.51         6.64         6.35         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.59         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       15.55        12.23        10.22        96.82        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       47.87        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        1.02         2.01         2.01         7.07        23.01         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        2.01        19.00         3.98        12.00        24.95         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       39.09        17.69        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        1.12         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 
        1.35         1.55         2.93         0.59         2.70         3.48 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        5.26         2.86         0.16        39.88        58.42         3.78 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.59               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            104.09             173.79 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             16.09              14.35 
[1] "0.6 - 104.1 (16.1)" "0.0 - 173.8 (14.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      8   11
  17Q LOSS WILD-TYPE   72  216
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                8                 72
  MALE                 11                216
D70V4, continuous
D70V5, multiclass
D70V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                7                 63
  T2                9                178
  T3                2                 30
  T4                1                 17
D70V7, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0               13                178
  N1                4                 80
  N2                2                 24
  N3                0                  5
D70V8, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0               15                256
  M1                1                  3
  MX                3                 23
D70V9, multiclass
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  I                 10                146
  II                 6                 75
  III                2                 60
  IV                 1                  3
D70V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      1   18
  17Q LOSS WILD-TYPE   10  278
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 1                 10
  YES               18                278
D70V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      2   17
  17Q LOSS WILD-TYPE   27  261
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 2                 27
  YES               17                261

Clustering(71) Variable = 18p loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    17  13
  18P LOSS WILD-TYPE 155 105
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                30                260 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                13                105 
$`18P LOSS MUTATED`
TCGA-18-3415 TCGA-18-3421 TCGA-22-4594 TCGA-22-4613 TCGA-22-5478 TCGA-22-5482 
       59.51        43.76        48.33        11.77         0.79        11.74 
TCGA-33-4538 TCGA-33-4547 TCGA-33-6737 TCGA-33-6738 TCGA-37-4132 TCGA-43-7656 
       97.94        43.10        19.76        26.99         7.46         6.97 
TCGA-46-3768 TCGA-56-1622 TCGA-56-7222 TCGA-60-2706 TCGA-66-2744 TCGA-66-2755 
        9.96        28.93         0.43        82.19         0.99         0.92 
TCGA-66-2766 TCGA-66-2773 TCGA-66-2780 TCGA-66-2785 TCGA-66-2786 TCGA-66-2791 
        1.02         3.02        12.03         1.94        25.97         5.03 
TCGA-66-2792 TCGA-66-2795 TCGA-77-6842 TCGA-77-8140 TCGA-77-8144 TCGA-90-7766 
       30.02         4.01        29.56        11.54        27.39         1.55 

$`18P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 
       13.12        32.02        19.30         9.53        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60        44.22        54.28        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
      114.05       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       10.98         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 
        3.95         0.43         0.39         6.54         8.09         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 
        3.78         1.58        66.51         6.64         6.35         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.59         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45         0.10         2.04         1.02         0.99 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
        0.99         1.45         1.32         0.85        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        96.82        37.94        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        55.40        29.19         9.01        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
        2.01        21.07         1.02         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 
        7.07        23.01        19.00         2.01        19.00         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       12.00        24.95        40.01        22.98         4.04        22.98 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 
       10.06        54.08        49.05         2.73         6.64        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
      104.09        26.40         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7767 
        0.53         1.41         0.46         1.18         1.35         2.93 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.43               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             97.94             173.79 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            11.755             15.550 
[1] "0.4 - 97.9 (11.8)"  "0.0 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      6   24
  18P LOSS WILD-TYPE   74  203
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE                6                 74
  MALE                 24                203
D71V4, continuous
D71V5, multiclass
D71V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                6                 64
  T2               21                166
  T3                2                 30
  T4                1                 17
D71V7, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               18                173
  N1                6                 78
  N2                5                 21
  N3                1                  4
D71V8, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               25                246
  M1                1                  3
  MX                3                 23
D71V9, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  I                 16                140
  II                 4                 77
  III                8                 54
  IV                 1                  3
D71V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      0   30
  18P LOSS WILD-TYPE   11  266
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 0                 11
  YES               30                266
D71V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      2   28
  18P LOSS WILD-TYPE   27  250
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 2                 27
  YES               28                250

Clustering(72) Variable = 18q loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    37  22
  18Q LOSS WILD-TYPE 135  96
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                59                231 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                22                 96 
$`18Q LOSS MUTATED`
TCGA-18-3412 TCGA-18-3416 TCGA-18-3421 TCGA-21-1079 TCGA-21-1080 TCGA-21-5782 
       11.34        28.34        43.76        31.69       122.43        31.63 
TCGA-21-5786 TCGA-22-4599 TCGA-22-4613 TCGA-22-5473 TCGA-33-4538 TCGA-33-4547 
       21.57        38.17        11.77        63.52        97.94        43.10 
TCGA-33-4583 TCGA-33-6737 TCGA-33-6738 TCGA-34-5231 TCGA-37-3789 TCGA-37-4130 
      141.34        19.76        26.99        50.24         0.43         8.09 
TCGA-39-5016 TCGA-39-5027 TCGA-43-7656 TCGA-46-3768 TCGA-51-4079 TCGA-52-7812 
       74.07        60.76         6.97         9.96         0.39        27.45 
TCGA-56-1622 TCGA-56-7222 TCGA-56-7223 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 
       28.93         0.43         0.99         3.58        10.22        82.19 
TCGA-60-2714 TCGA-60-2726 TCGA-66-2744 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
       16.83        11.77         0.99         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 
        2.01         3.02        12.03         3.98         1.94        25.97 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-77-6842 TCGA-77-7337 
       22.98         5.03        30.02         4.01        29.56       106.95 
TCGA-77-8130 TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 TCGA-85-6798 TCGA-85-7698 
       82.92        17.69        11.54        27.39         1.12         1.61 
TCGA-85-8072 TCGA-90-7766 TCGA-90-7769 TCGA-92-8063 TCGA-94-7033 
        1.18         1.55         0.59         4.01         2.86 

$`18Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 
       13.02        59.51        24.92         1.61         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-1082 
       70.13        60.89        34.78        15.55         9.30       119.80 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
        8.78        88.08        29.85        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
       34.75        13.12        32.02        19.30         9.53        31.69 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       64.90        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 
       16.60        82.98       114.05       173.79       103.53        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       54.44        10.98         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        31.23        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        3.95         0.39         6.54         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        47.80        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 
        6.02         2.79         5.42         3.78         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
        6.64         6.35         0.95         0.59         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       17.79         5.85         8.75         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2697 
        0.99         1.45         1.32         0.85        15.55        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       29.19         9.01        47.87        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10         2.01        21.07         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2767 
        0.92         0.99         0.99        20.98        25.02         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 
        7.07        23.01        19.00         2.01        19.00        12.00 
TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 TCGA-66-2794 
       24.95        40.01        22.98         4.04        10.06        54.08 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
       49.05         2.73         6.64        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 
        0.16        46.78        15.75        37.81        12.59        53.92 
TCGA-77-8136 TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       39.09       104.09        26.40         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
       35.90         0.33         0.36         0.79         0.59         0.33 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-90-6837 TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 
        1.41         0.46         1.35         2.93         2.70         3.48 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        5.26         2.27         0.16        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.39               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            141.34             173.79 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             11.77              15.55 
[1] "0.4 - 141.3 (11.8)" "0.0 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     10   50
  18Q LOSS WILD-TYPE   70  177
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               10                 70
  MALE                 50                177
D72V4, continuous
D72V5, multiclass
D72V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               11                 59
  T2               42                145
  T3                6                 26
  T4                1                 17
D72V7, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               35                156
  N1               18                 66
  N2                6                 20
  N3                1                  4
D72V8, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               50                221
  M1                0                  4
  MX                7                 19
D72V9, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  I                 31                125
  II                17                 64
  III               11                 51
  IV                 0                  4
D72V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      1   59
  18Q LOSS WILD-TYPE   10  237
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 1                 10
  YES               59                237
D72V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      5   55
  18Q LOSS WILD-TYPE   24  223
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 5                 24
  YES               55                223

Clustering(73) Variable = 19p loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    29  18
  19P LOSS WILD-TYPE 143 100
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                47                243 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                18                100 
$`19P LOSS MUTATED`
TCGA-18-5592 TCGA-21-5783 TCGA-21-5786 TCGA-22-0940 TCGA-22-4601 TCGA-22-5478 
        3.02        88.08        21.57        19.99        34.75         0.79 
TCGA-22-5492 TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 TCGA-34-5928 TCGA-37-4129 
       16.60       103.53        54.44        19.76         5.52         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5029 
        8.09         7.46         6.81         0.39         3.39        24.33 
TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6771 TCGA-43-7656 
       18.28        18.08        11.57         8.48         5.42         6.97 
TCGA-46-6026 TCGA-52-7811 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-60-2696 
        0.59         8.75         0.43         0.99         1.45         3.58 
TCGA-60-2707 TCGA-60-2711 TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 TCGA-66-2780 
       21.70        29.19         1.02         0.99        25.02        12.03 
TCGA-66-2782 TCGA-66-2786 TCGA-66-2793 TCGA-68-7755 TCGA-68-7756 TCGA-77-6845 
       12.00        25.97        10.06         2.73         6.64        23.28 
TCGA-77-8143 TCGA-77-8144 TCGA-85-8070 TCGA-92-8063 TCGA-94-7557 
       26.40        27.39         1.41         4.01         0.16 

$`19P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       29.85        10.82         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 
       48.33        24.13         0.56        38.17        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60        44.22        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       18.84        30.08        62.86        56.32        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       97.94        43.10       173.79       141.34        14.07        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
        7.73        14.07        22.95         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        0.43         0.39         7.82        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       13.12        18.84        18.05         7.00         6.02         2.79 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        3.78         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.95         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        1.32         0.85        15.55        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       37.94        82.19        68.45        49.48        55.40         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       47.87        16.83        35.34        38.83        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       16.96        43.10         2.01        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99        20.98         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
        2.01        19.00         3.98        24.95         1.94        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       22.98         4.04        22.98         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 
        4.01        49.05        29.56        73.08        75.09        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        0.16        46.78        15.75        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 
       53.92        39.09        17.69       104.09        11.54         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 
        9.63        54.41        35.90         0.33         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 
        1.25         0.85         1.97         0.53         0.46         1.18 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 
        1.35         1.55         2.93         0.59         2.70         3.48 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        5.26         2.27         2.86        39.88        58.42         3.78 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       13.58         7.33        10.13 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.16               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            103.53             173.79 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              8.48              16.83 
[1] "0.2 - 103.5 (8.5)"  "0.0 - 173.8 (16.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     13   37
  19P LOSS WILD-TYPE   67  190
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               13                 67
  MALE                 37                190
D73V4, continuous
D73V5, multiclass
D73V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               13                 57
  T2               27                160
  T3                5                 27
  T4                5                 13
D73V7, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               32                159
  N1               10                 74
  N2                8                 18
  N3                0                  5
D73V8, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0               42                229
  M1                1                  3
  MX                6                 20
D73V9, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  I                 22                134
  II                11                 70
  III               15                 47
  IV                 1                  3
D73V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      5   45
  19P LOSS WILD-TYPE    6  251
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 5                  6
  YES               45                251
D73V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      7   43
  19P LOSS WILD-TYPE   22  235
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 7                 22
  YES               43                235

Clustering(74) Variable = 19q loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    21   9
  19Q LOSS WILD-TYPE 151 109
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                30                260 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 9                109 
$`19Q LOSS MUTATED`
TCGA-18-3416 TCGA-18-5592 TCGA-22-0944 TCGA-22-4594 TCGA-22-4613 TCGA-33-4587 
       28.34         3.02         7.33        48.33        11.77        54.44 
TCGA-37-4129 TCGA-37-4135 TCGA-37-4141 TCGA-43-3394 TCGA-43-6771 TCGA-43-7656 
        6.54         6.81         0.39        11.57         5.42         6.97 
TCGA-46-6026 TCGA-52-7811 TCGA-56-7222 TCGA-56-7579 TCGA-60-2696 TCGA-60-2707 
        0.59         8.75         0.43         1.45         3.58        21.70 
TCGA-60-2711 TCGA-66-2753 TCGA-66-2759 TCGA-66-2786 TCGA-66-2794 TCGA-68-7755 
       29.19         1.02        25.02        25.97        54.08         2.73 
TCGA-77-6845 TCGA-77-8143 TCGA-77-8144 TCGA-85-8070 TCGA-85-8071 TCGA-92-8063 
       23.28        26.40        27.39         1.41         0.46         4.01 

$`19Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 
       29.85        21.57        10.82        19.99        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       35.08        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02        19.30         9.53        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
      141.34        14.07        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 
        0.39         8.09         7.46         7.82         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.64         0.79        17.88        18.28        18.08        13.12 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.84         8.48        18.05         7.00         6.02         2.79 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        3.78         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.95         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 
        0.99         1.32         0.85        15.55        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        82.19        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        2.01         0.92         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        10.06         4.01        49.05 
TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 
        6.64        29.56        73.08        75.09        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 TCGA-77-8148 
       39.09        17.69       104.09        11.54         6.97         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       54.41        35.90         0.33         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
        0.85         1.97         0.53         1.18         1.35         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 
        2.93         0.59         2.70         3.48         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.39               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             54.44             173.79 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             7.150             15.665 
[1] "0.4 - 54.4 (7.2)"   "0.0 - 173.8 (15.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
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        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
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        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
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        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
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        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      9   24
  19Q LOSS WILD-TYPE   71  203
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                9                 71
  MALE                 24                203
D74V4, continuous
D74V5, multiclass
D74V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1                7                 63
  T2               19                168
  T3                5                 27
  T4                2                 16
D74V7, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               22                169
  N1                6                 78
  N2                5                 21
  N3                0                  5
D74V8, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               28                243
  M1                0                  4
  MX                4                 22
D74V9, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  I                 15                141
  II                 9                 72
  III                8                 54
  IV                 0                  4
D74V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      3   30
  19Q LOSS WILD-TYPE    8  266
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 3                  8
  YES               30                266
D74V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      3   30
  19Q LOSS WILD-TYPE   26  248
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 3                 26
  YES               30                248

Clustering(75) Variable = 20p loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    12   3
  20P LOSS WILD-TYPE 160 115
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                15                275 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 3                115 
$`20P LOSS MUTATED`
TCGA-18-3416 TCGA-18-4721 TCGA-21-1078 TCGA-37-4135 TCGA-39-5034 TCGA-60-2706 
       28.34        90.51        15.55         6.81        36.39        82.19 
TCGA-60-2714 TCGA-66-2766 TCGA-66-2768 TCGA-66-2790 TCGA-77-7337 TCGA-77-8144 
       16.83         1.02         2.01        22.98       106.95        27.39 
TCGA-85-8071 TCGA-92-8065 TCGA-96-7544 
        0.46         2.27        39.88 

$`20P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 
       99.16        70.13        60.89        34.78        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
        8.48        18.05         7.00         6.02         2.79         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79         5.85         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.32         0.85        15.55         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       29.19         9.01        47.87        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 
       25.02         0.99         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         2.73         6.64        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
       70.09         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       26.40         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.41         1.18         1.35         1.55         2.93         0.59 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 
        2.70         3.48         4.01         5.26         2.86         0.16 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78        13.58         7.33        10.13 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.46               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            106.95             173.79 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             22.98              14.07 
[1] "0.5 - 107.0 (23.0)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "2.7"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3   12
  20P LOSS WILD-TYPE   77  215
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                3                 77
  MALE                 12                215
D75V4, continuous
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 1                 51 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5783         TCGA-21-5787         TCGA-22-1017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4613 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-37-4129         TCGA-37-4130 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-5819 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-56-7222         TCGA-60-2696 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2712         TCGA-60-2715 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-70-6722 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-70-6723         TCGA-85-7843         TCGA-85-7844 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-7340         TCGA-92-7341         TCGA-98-7454 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
D75V5, multiclass
D75V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                2                 68
  T2               11                176
  T3                2                 30
  T4                0                 18
D75V7, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                7                184
  N1                7                 77
  N2                1                 25
  N3                0                  5
D75V8, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               13                258
  M1                0                  4
  MX                2                 24
D75V9, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  I                  4                152
  II                 8                 73
  III                3                 59
  IV                 0                  4
D75V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      0   15
  20P LOSS WILD-TYPE   11  281
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 0                 11
  YES               15                281
D75V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1   14
  20P LOSS WILD-TYPE   28  264
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 1                 28
  YES               14                264

Clustering(76) Variable = 20q loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    10   5
  20Q LOSS WILD-TYPE 162 113
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                15                275 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                113 
$`20Q LOSS MUTATED`
TCGA-18-3415 TCGA-18-3416 TCGA-18-4721 TCGA-22-4604 TCGA-33-4583 TCGA-34-2600 
       59.51        28.34        90.51        13.12       141.34        61.61 
TCGA-34-7107 TCGA-39-5034 TCGA-43-3394 TCGA-66-2766 TCGA-66-2791 TCGA-85-7698 
        1.08        36.39        11.57         1.02         5.03         1.61 
TCGA-85-8071 TCGA-92-8065 TCGA-96-7544 
        0.46         2.27        39.88 

$`20Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       11.34        13.02        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
        2.79         3.02        27.16       115.59        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.57        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        2.63        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       22.95         5.52         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       13.12        18.84         8.48        18.05         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
        2.79         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         2.07        17.79         5.85         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
        0.99         1.45         1.32         0.85        15.55         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        82.19        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       16.83        35.34        38.83        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        2.01         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        2.73         6.64        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
      106.95         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        1.41         1.18         1.35         1.55         2.93         0.59 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 
        2.70         3.48         4.01         5.26         2.86         0.16 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       58.42         3.78        13.58         7.33        10.13 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.46               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            141.34             173.79 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             13.12              14.93 
[1] "0.5 - 141.3 (13.1)" "0.0 - 173.8 (14.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      3   13
  20Q LOSS WILD-TYPE   77  214
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                3                 77
  MALE                 13                214
D76V4, continuous
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                 51 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5783         TCGA-21-5787         TCGA-22-1017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4613         TCGA-22-5472 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5473         TCGA-22-5474         TCGA-22-5477 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5478         TCGA-22-5480         TCGA-22-5482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-34-5234 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-5819 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-56-7222         TCGA-60-2696 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2712         TCGA-60-2715 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-70-6722 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-70-6723         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-7340         TCGA-92-7341         TCGA-98-7454 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
D76V5, multiclass
D76V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                4                 66
  T2               10                177
  T3                2                 30
  T4                0                 18
D76V7, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0               10                181
  N1                4                 80
  N2                1                 25
  N3                1                  4
D76V8, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0               14                257
  M1                0                  4
  MX                2                 24
D76V9, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  I                  7                149
  II                 6                 75
  III                3                 59
  IV                 0                  4
D76V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   16
  20Q LOSS WILD-TYPE   11  280
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                 11
  YES               16                280
D76V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      1   15
  20Q LOSS WILD-TYPE   28  263
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 1                 28
  YES               15                263

Clustering(77) Variable = 21q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    59  31
  21Q LOSS WILD-TYPE 113  87
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                90                200 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                31                 87 
$`21Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 
       81.07        46.52        13.02        59.51        28.34         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 TCGA-21-1079 
        2.79        90.51       115.59        99.16        70.13        31.69 
TCGA-21-1083 TCGA-21-5786 TCGA-22-0944 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 
        8.78        21.57         7.33        14.10        20.45        35.08 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5473 TCGA-22-5474 TCGA-22-5483 
       38.17        13.12        11.77        63.52        14.60        18.84 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-34-5231 TCGA-34-5927 
       56.32        82.98        97.94        43.10        50.24        22.95 
TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        1.08         0.43         0.39         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5027 TCGA-39-5029 TCGA-39-5034 TCGA-39-5036 TCGA-43-2576 
       74.07        60.76        24.33        36.39        35.64        18.28 
TCGA-43-3920 TCGA-43-7656 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4080 
       18.84         6.97         6.35         9.96         0.59         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        2.07        17.79         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-60-2707 TCGA-60-2711 TCGA-60-2712 TCGA-66-2742 TCGA-66-2754 
        0.85        21.70        29.19         9.01        21.07         2.01 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2771 TCGA-66-2777 
       20.98        25.02         2.01         1.02        19.00         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        12.00         1.94        25.97        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2800 TCGA-68-7756 TCGA-77-6842 TCGA-77-7335 
        5.03        30.02        49.05         6.64        29.56        70.09 
TCGA-77-7463 TCGA-77-8150 TCGA-77-8154 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       46.78        54.41        35.90         0.79         1.12         0.59 
TCGA-85-7698 TCGA-85-8070 TCGA-85-8071 TCGA-90-7766 TCGA-94-7557 TCGA-98-8021 
        1.61         1.41         0.46         1.55         0.16        13.58 

$`21Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 
       12.16         4.47        79.46         4.80        11.34        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1076 
        1.61        43.76         3.02        27.16        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 
       34.78        15.55       122.43         9.30       119.80        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 
       88.08        29.85        10.82        19.99        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 
       64.21         1.74        27.02        48.82        48.33        24.13 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
        0.56        34.75        32.02        19.30         9.53        31.69 
TCGA-22-5472 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       64.90        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4566 
       11.74        30.08        62.86        16.60       114.05       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       31.23        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4129 TCGA-37-4130 
       14.07         5.52         4.96         3.95         6.54         8.09 
TCGA-37-4132 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        7.46         0.39        47.80        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
       70.03         1.71         1.94        27.35        15.58         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 
       17.88        18.08        13.12        11.57         8.48        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 
        7.00         6.02         2.79         5.42         3.78         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-46-6025 TCGA-51-4079 TCGA-52-7809 TCGA-52-7811 
       66.51         6.64         0.95         0.39         5.85         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 
       82.19        68.45        49.48        55.40        47.87        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        38.83        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        2.01         0.99         1.02         0.92         0.99         0.99 
TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        0.99         2.01         2.01         7.07        23.01         3.02 
TCGA-66-2778 TCGA-66-2783 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 
       19.00        24.95        40.01         4.04        22.98        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
       54.08         4.01         2.73        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 
       11.18        89.95        20.78         0.49        42.25       106.95 
TCGA-77-7338 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
        0.16        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8156 TCGA-85-6560 TCGA-85-7697 TCGA-85-7699 
        6.97         9.63         0.33         0.36         0.33         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 
        1.15         1.25         0.85         1.97         0.53         1.18 
TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        1.35         2.93         0.59         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
        5.26         2.27         2.86        39.88        58.42         3.78 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.16               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            115.59             173.79 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             14.35              15.24 
[1] "0.2 - 115.6 (14.3)" "0.0 - 173.8 (15.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
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        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-98-8022         TCGA-98-8023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     16   81
  21Q LOSS WILD-TYPE   64  146
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               16                 64
  MALE                 81                146
D77V4, continuous
D77V5, multiclass
D77V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               20                 50
  T2               57                130
  T3               13                 19
  T4                7                 11
D77V7, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0               61                130
  N1               25                 59
  N2               10                 16
  N3                1                  4
D77V8, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               88                183
  M1                2                  2
  MX                4                 22
D77V9, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  I                 48                108
  II                21                 60
  III               25                 37
  IV                 2                  2
D77V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      4   93
  21Q LOSS WILD-TYPE    7  203
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 4                  7
  YES               93                203
D77V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      7   90
  21Q LOSS WILD-TYPE   22  188
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 7                 22
  YES               90                188

Clustering(78) Variable = 22q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    18  12
  22Q LOSS WILD-TYPE 154 106
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                30                260 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                12                106 
$`22Q LOSS MUTATED`
TCGA-18-4083 TCGA-21-1070 TCGA-22-5480 TCGA-22-5483 TCGA-33-4583 TCGA-33-4587 
        6.15       115.59        71.34        18.84       141.34        54.44 
TCGA-33-6737 TCGA-34-5928 TCGA-37-4129 TCGA-37-4132 TCGA-37-5819 TCGA-39-5029 
       19.76         5.52         6.54         7.46         3.39        24.33 
TCGA-43-2578 TCGA-43-2581 TCGA-43-7658 TCGA-52-7812 TCGA-60-2695 TCGA-66-2753 
       18.08        13.12        66.51        27.45        15.55         1.02 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 TCGA-66-2771 TCGA-66-2778 TCGA-66-2789 
        0.99        25.02         1.02        19.00        19.00         4.04 
TCGA-66-2791 TCGA-66-2793 TCGA-77-7337 TCGA-77-8150 TCGA-92-8063 TCGA-92-8065 
        5.03        10.06       106.95        54.41         4.01         2.27 

$`22Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
       43.76         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.57        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       54.28        79.20        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      103.53        14.07        10.98        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 
        4.96         1.08         3.95         0.43         0.39         8.09 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       18.28        11.57        18.84         8.48        18.05         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        6.02         2.79         5.42         3.78         6.97         1.58 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 
        0.39         2.07        17.79         5.85         8.75        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
        1.45         1.32         0.85         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        82.19        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       55.40        29.19         9.01        47.87        16.83        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
        1.22        23.64        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        0.99         2.01         2.01         2.01         7.07        23.01 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02         2.01        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 
        1.94        25.97        40.01        22.98        22.98        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
       54.08         4.01        49.05         2.73         6.64        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        0.49        42.25        70.09         0.16        46.78        15.75 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90         0.33         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 
        1.97         0.53         1.41         0.46         1.18         1.35 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
        1.55         2.93         0.59         2.70         3.48         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.99               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            141.34             173.79 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            16.815             14.350 
[1] "1.0 - 141.3 (16.8)" "0.0 - 173.8 (14.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-33-4586         TCGA-33-4587         TCGA-33-4589 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-33-6737         TCGA-33-6738         TCGA-34-2596 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-34-7107         TCGA-37-3783         TCGA-37-3789 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-37-4141         TCGA-37-5819         TCGA-39-5011 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5034         TCGA-39-5035 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-39-5039 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-46-3768 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7811         TCGA-52-7812 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-6545 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-60-2695         TCGA-60-2696 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-22-0940 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4593         TCGA-22-4594         TCGA-22-4595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4605         TCGA-22-4607 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4609         TCGA-22-4613         TCGA-22-5471 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5481         TCGA-22-5482 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5483         TCGA-22-5485         TCGA-22-5489 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-77-6842         TCGA-77-6843 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8154         TCGA-77-8156 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8048         TCGA-85-8049         TCGA-85-8052 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8070         TCGA-85-8071         TCGA-85-8072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-92-7341 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-92-8063         TCGA-92-8064         TCGA-92-8065 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-94-7033         TCGA-94-7557         TCGA-96-7544 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-7545         TCGA-98-7454         TCGA-98-8021 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-98-8022         TCGA-98-8023 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     13   19
  22Q LOSS WILD-TYPE   67  208
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               13                 67
  MALE                 19                208
D78V4, continuous
D78V5, multiclass
D78V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1                9                 61
  T2               16                171
  T3                6                 26
  T4                1                 17
D78V7, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               13                178
  N1                9                 75
  N2                7                 19
  N3                3                  2
D78V8, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               28                243
  M1                1                  3
  MX                3                 23
D78V9, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  I                  9                147
  II                 8                 73
  III               14                 48
  IV                 1                  3
D78V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      1   31
  22Q LOSS WILD-TYPE   10  265
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 1                 10
  YES               31                265
D78V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      4   28
  22Q LOSS WILD-TYPE   25  250
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 4                 25
  YES               28                250

Clustering(79) Variable = Xq loss mutation analysis
D79V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED     6   6
  XQ LOSS WILD-TYPE 166 112
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               12               278 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               112 
$`XQ LOSS MUTATED`
TCGA-22-4591 TCGA-22-5481 TCGA-22-5491 TCGA-33-4532 TCGA-33-4587 TCGA-43-5668 
       20.45        79.20        56.32        82.98        54.44         8.48 
TCGA-46-6025 TCGA-66-2763 TCGA-66-2773 TCGA-66-2789 TCGA-66-2790 TCGA-68-7755 
        0.95         0.99         3.02         4.04        22.98         2.73 

$`XQ LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      115.59        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
       31.63        88.08        29.85        21.57        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
        0.79        54.28        71.34        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53       141.34        14.07        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        18.28        18.08        13.12        11.57        18.84 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05         7.00         6.02         2.79         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        0.59         0.39         0.39         2.07        17.79         5.85 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       15.55         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       82.19        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        47.87        16.83        35.34        38.83        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.02         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        6.64        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        0.16        46.78        15.75        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        54.41        35.90         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        1.41         0.46         1.18         1.35         1.55         2.93 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        2.86         0.16        39.88        58.42         3.78        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.95              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            82.98            173.79 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           14.465            14.765 
[1] "0.9 - 83.0 (14.5)"  "0.0 - 173.8 (14.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-22-0940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4607        TCGA-22-4609        TCGA-22-4613 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4533        TCGA-33-4538        TCGA-33-4547        TCGA-33-4566 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-37-5819        TCGA-39-5011        TCGA-39-5016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2576        TCGA-43-2578 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-43-5668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-60-2695 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-68-7756        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8128 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-85-6560        TCGA-85-6561 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-8048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-92-7340        TCGA-92-7341        TCGA-92-8063 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8064        TCGA-92-8065        TCGA-94-7033        TCGA-94-7557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-98-7454        TCGA-98-8021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      4    8
  XQ LOSS WILD-TYPE   76  219
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               4                76
  MALE                 8               219
D79V4, continuous
[1] "Remove cluster labels:" "XQ LOSS MUTATED"       
clus
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                2                50 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5783        TCGA-21-5787 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4593        TCGA-22-4594        TCGA-22-4595 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4596        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5483        TCGA-22-5485        TCGA-22-5489        TCGA-22-5492 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-5819        TCGA-43-2576 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-60-2696        TCGA-60-2698        TCGA-60-2712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2725        TCGA-60-2726        TCGA-70-6722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-70-6723        TCGA-85-7843        TCGA-85-7844        TCGA-92-7340 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-7341        TCGA-98-7454 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
D79V5, multiclass
D79V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               4                66
  T2               7               180
  T3               1                31
  T4               0                18
D79V7, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0               5               186
  N1               5                79
  N2               1                25
  N3               1                 4
D79V8, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              11               260
  M1               0                 4
  MX               1                25
D79V9, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  I                 5               151
  II                5                76
  III               2                60
  IV                0                 4
D79V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      0   12
  XQ LOSS WILD-TYPE   11  284
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                0                11
  YES              12               284
D79V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      4    8
  XQ LOSS WILD-TYPE   25  270
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                4                25
  YES               8               270
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
