
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUSC/2034685/1.GDAC_mergedClustering.Finished/LUSC.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC/1971863/1.GDAC_clinicalDataPicker.Finished/LUSC.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=309, in cluster file=361, common to both=309
[1]  10 309
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
43 50 30 31 
 1  2  3  4 
43 50 30 31 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
28 54 72 
 1  2  3 
28 54 72 
[1] "CN_CNMF"
[1] 3
  1   2   3 
109 100  98 
  1   2   3 
109 100  98 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
69 65 41 
 1  2  3 
69 65 41 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
57 72 61 
 1  2  3 
57 72 61 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
47 46 56 41 
 1  2  3  4 
47 46 56 41 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4  5  6  7  8 
22 20 55 40 34 36  4  9 
 1  2  3  4  5  6  7  8 
22 20 55 40 34 36  4  9 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
65 74 81 
 1  2  3 
65 74 81 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
141 110  31 
  1   2   3 
141 110  31 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
52 54 85 91 
 1  2  3  4 
52 54 85 91 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NEOADJUVANTTHERAPY"                    
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 309 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3516         1426         3016         2133         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         473          964         3724          283         3644          267 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
         962           NA          908          656          329          608 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
         223          454          131         1953           53          429 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
         822         1485          622         1067         1470          734 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
          17         1161         1057          399           NA          587 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
          NA          358          964         1974         1932          444 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
        1345           24         1651         2170           NA          357 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         573          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
         428           NA          334           NA          821           80 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        1874          958          881          999          950         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        1575          994           NA          329          235          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
         698          168           NA           NA          120           13 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
          12          199          246          227          238          207 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
          12          103         1454         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
         832         1107          474         1084           24          544 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
         556          550          399          352          573          258 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
         549          213          183           85           NA           NA 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3765 
         212           48         2023          202          193           NA 
TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 TCGA-46-6025 TCGA-46-6026 
          NA           NA           NA           NA           29           18 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-51-6867 TCGA-52-7622 TCGA-52-7809 
          12           12           63           NA          541          178 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
          NA           NA          880            3           NA           62 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
          31           30           13           30           44           40 
TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
          26          473          109           NA          311           NA 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
          NA         2500          660         2082         1505         1685 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
         888          274         1456          512         1075         1181 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
         931           96          793          733          693           37 
TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 TCGA-63-6202 TCGA-63-7020 
         719          358           NA           NA           NA           NA 
TCGA-63-7021 TCGA-63-7022 TCGA-63-7023 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
          NA           NA           NA          516         1311           61 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
         641           30           31           61           28           30 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
          30          638          761           30           61           31 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
          61           61          215          700          578           92 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
          61          578          366          121          365          759 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
          59          790         1217          699          123          699 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
         153          913          306         1645          122         1492 
TCGA-68-7755 TCGA-68-7756 TCGA-70-6722 TCGA-70-6723 TCGA-77-6842 TCGA-77-6843 
          83          202           NA           NA           NA           NA 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
          NA           NA           NA         2736           NA           15 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        1285           NA           NA           NA           NA          479 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
          NA         2522           NA           NA           NA           NA 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8146 
        3166           NA           NA          833           NA         2183 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-79-5596 TCGA-85-6175 
         293           NA         1092           10           NA           NA 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
          11           24           34           18           10           49 
TCGA-85-7699 TCGA-85-7710 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
           1           NA           35           38           26           60 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-90-6837 TCGA-90-7766 
          16           43           14           36           41           47 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
          89           18           82          106          122          160 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 
          69           87           NA         1213         1777          115 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
         413          223          308 
Variable 1:'AGE':	nDistinctValues=43,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=117,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=215,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=155,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
158  81  62   4 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 309 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=43, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 72 187  32  18 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 72 187  32  18 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 72 187  32  18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 72 187  32  18 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
193  84  26   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
193  84  26   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
193  84  26   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
193  84  26   5 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
158  81  62   4 
[1] "table(vv)"
vv
  I  II III  IV 
158  81  62   4 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
158  81  62   4 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
158  81  62   4 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 26 16
  subtype2 29 19
  subtype3 12 16
  subtype4 19 11
subtype1 subtype2 subtype3 subtype4 
      42       48       28       30 
subtype1 subtype2 subtype3 subtype4 
      16       19       16       11 
$subtype1
TCGA-18-3406 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1070 TCGA-21-1079 
       12.16        13.02         1.61        43.76       115.59        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-22-0944 TCGA-22-1011 TCGA-22-4595 
      122.43         9.30       119.80         7.33         1.74        24.13 
TCGA-22-4607 TCGA-33-4547 TCGA-33-4589 TCGA-34-2600 TCGA-34-2609 TCGA-34-5241 
       19.30        43.10        10.98        61.61        31.23        14.07 
TCGA-37-3783 TCGA-37-3789 TCGA-39-5029 TCGA-43-3920 TCGA-56-1622 TCGA-60-2707 
        3.95         0.43        24.33        18.84        28.93        21.70 
TCGA-60-2708 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-66-2734 
       68.45        30.61         3.16        26.07         1.22        43.10 
TCGA-66-2742 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2771 
       21.07        25.02         0.99         2.01         2.01        19.00 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 TCGA-66-2789 
       19.00        12.03         3.98        12.00        22.98         4.04 

$subtype2
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4086 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        2.79        46.88        99.16        70.13        60.89        34.78 
TCGA-22-1012 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-33-4532 TCGA-33-4538 
       14.10        38.17        34.75        13.12        82.98        97.94 
TCGA-34-2596 TCGA-34-2605 TCGA-34-5240 TCGA-39-5016 TCGA-39-5021 TCGA-39-5036 
        2.63        28.96         7.73        74.07        68.58        35.64 
TCGA-39-5037 TCGA-43-3394 TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        0.79        11.57         9.96         0.39         0.39         2.07 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 
       55.40        29.19        24.10        22.78        16.96         2.01 
TCGA-66-2758 TCGA-66-2766 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2783 
       20.98         1.02        23.01         3.02         2.01        24.95 
TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       40.01         5.03        30.02        54.08         4.01        49.05 

$subtype3
TCGA-18-3409 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 
       79.46        19.99        14.93         4.31        64.21        27.02 
TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-34-2604 TCGA-34-2608 TCGA-37-3792 
       48.82        48.33         0.56        31.50        32.84         0.39 
TCGA-39-5030 TCGA-43-2576 TCGA-43-2581 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 
        1.94        18.28        13.12         3.58        10.22        82.19 
TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2725 TCGA-66-2744 TCGA-66-2753 
        9.01        16.83        35.34        23.64         0.99         1.02 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2785 TCGA-66-2786 
        2.01         7.07         1.94        25.97 

$subtype4
TCGA-18-3410 TCGA-18-3417 TCGA-18-4083 TCGA-21-1078 TCGA-21-1083 TCGA-22-4591 
        4.80        24.92         6.15        15.55         8.78        20.45 
TCGA-22-4613 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-37-4129 TCGA-37-4130 
       11.77       114.05       173.79       103.53         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5034 
        7.46         7.82         6.81         0.39        47.80        36.39 
TCGA-39-5035 TCGA-43-2578 TCGA-60-2695 TCGA-60-2713 TCGA-60-2716 TCGA-60-2726 
       15.58        18.08        15.55        47.87        38.83        11.77 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2790 TCGA-66-2793 
        2.01         0.92         0.99         0.99        22.98        10.06 

subtype1 subtype2 subtype3 subtype4 
    0.43     0.39     0.39     0.39 
subtype1 subtype2 subtype3 subtype4 
  122.43    99.16    82.19   173.79 
subtype1 subtype2 subtype3 subtype4 
  19.000   24.525   15.880   11.770 
[1] "0.4 - 122.4 (19.0)" "0.4 - 99.2 (24.5)"  "0.4 - 82.2 (15.9)" 
[4] "0.4 - 173.8 (11.8)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1  9 34
  subtype2 13 37
  subtype3 11 19
  subtype4 11 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9   34
  subtype2   13   37
  subtype3   11   19
  subtype4   11   20
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        9       13       11       11
  MALE         34       37       19       20
D1V4, continuous
D1V5, multiclass
D1V6, multiclass
D1V7, multiclass
D1V8, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       39       48       30       29
  M1        2        0        0        2
D1V9, multiclass
D1V10, binary
          cls
clus        0  1
  subtype1  1 42
  subtype2  0 50
  subtype3  1 29
  subtype4  0 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   42
  subtype2    0   50
  subtype3    1   29
  subtype4    0   31
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        1        0
  YES       42       50       29       31
D1V11, binary
          cls
clus        0  1
  subtype1  4 39
  subtype2  5 45
  subtype3  3 27
  subtype4  1 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   39
  subtype2    5   45
  subtype3    3   27
  subtype4    1   30
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         4        5        3        1
  YES       39       45       27       30

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 20  7
  subtype2 31 21
  subtype3 35 34
subtype1 subtype2 subtype3 
      27       52       69 
subtype1 subtype2 subtype3 
       7       21       34 
$subtype1
TCGA-21-1083 TCGA-22-1005 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-33-4533 
        8.78        64.21        48.82        48.33         0.56       114.05 
TCGA-33-4566 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 
      173.79         0.39         6.54         8.09         7.46         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5034 TCGA-39-5035 TCGA-43-2576 TCGA-43-2578 
        0.39        47.80        36.39        15.58        18.28        18.08 
TCGA-43-2581 TCGA-60-2695 TCGA-60-2706 TCGA-60-2714 TCGA-66-2754 TCGA-66-2756 
       13.12        15.55        82.19        16.83         2.01         0.99 
TCGA-66-2757 TCGA-66-2785 TCGA-66-2790 
        0.99         1.94        22.98 

$subtype2
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4086 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
        6.15         2.79        46.88        99.16        70.13        34.78 
TCGA-22-0944 TCGA-22-1012 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-33-4532 
        7.33        14.10        38.17        34.75        13.12        82.98 
TCGA-33-4538 TCGA-34-2596 TCGA-34-2605 TCGA-34-5240 TCGA-37-4133 TCGA-39-5016 
       97.94         2.63        28.96         7.73         7.82        74.07 
TCGA-39-5021 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-46-3768 TCGA-51-4079 
       68.58        35.64         0.79        11.57         9.96         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2722 
        0.39         2.07        55.40        29.19        47.87        24.10 
TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 
       22.78        16.96         2.01        20.98        25.02         1.02 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 TCGA-66-2791 
       23.01         3.02         2.01        24.95        40.01         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       30.02        54.08         4.01        49.05 

$subtype3
TCGA-18-3406 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 
       12.16        79.46         4.80        13.02        24.92         1.61 
TCGA-18-3421 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       43.76       115.59        60.89        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1011 
        9.30       119.80        19.99        14.93         4.31         1.74 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4607 TCGA-22-4613 TCGA-33-4547 
       27.02        20.45        24.13        19.30        11.77        43.10 
TCGA-33-4582 TCGA-33-4589 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
      103.53        10.98        61.61        31.50        32.84        31.23 
TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 TCGA-39-5029 TCGA-39-5030 TCGA-43-3920 
       14.07         3.95         0.43        24.33         1.94        18.84 
TCGA-56-1622 TCGA-60-2696 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2712 
       28.93         3.58        10.22        21.70        68.45         9.01 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
       35.34        38.83        30.61         3.16        26.07         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       23.64        11.77        43.10        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.92         0.99         2.01         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2786 
       19.00        19.00        12.03         3.98        12.00        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 
       22.98         4.04        10.06 

subtype1 subtype2 subtype3 
    0.39     0.39     0.43 
subtype1 subtype2 subtype3 
  173.79    99.16   122.43 
subtype1 subtype2 subtype3 
  15.550   23.555   18.840 
[1] "0.4 - 173.8 (15.6)" "0.4 - 99.2 (23.6)"  "0.4 - 122.4 (18.8)"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 15 13
  subtype2 12 42
  subtype3 17 55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   13
  subtype2   12   42
  subtype3   17   55
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       12       17
  MALE         13       42       55
D2V4, continuous
D2V5, multiclass
D2V6, multiclass
D2V7, multiclass
D2V8, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       27       52       67
  M1        1        0        3
D2V9, multiclass
D2V10, binary
          cls
clus        0  1
  subtype1  1 27
  subtype2  0 54
  subtype3  1 71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   27
  subtype2    0   54
  subtype3    1   71
     clus
vv    subtype1 subtype2 subtype3
  NO         1        0        1
  YES       27       54       71
D2V11, binary
          cls
clus        0  1
  subtype1  3 25
  subtype2  5 49
  subtype3  5 67
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   25
  subtype2    5   49
  subtype3    5   67
     clus
vv    subtype1 subtype2 subtype3
  NO         3        5        5
  YES       25       49       67

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 53 49
  subtype2 62 34
  subtype3 57 35
subtype1 subtype2 subtype3 
     102       96       92 
subtype1 subtype2 subtype3 
      49       34       35 
$subtype1
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       12.16         4.47        79.46        90.51        27.16       115.59 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-5784 TCGA-22-0940 TCGA-22-1000 
       60.89        15.55        31.69        29.85        19.99        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
        4.31        64.21         1.74        27.02        48.82        48.33 
TCGA-22-4596 TCGA-22-4605 TCGA-22-4609 TCGA-22-5472 TCGA-22-5479 TCGA-22-5480 
        0.56        32.02         9.53        64.90        54.28        71.34 
TCGA-22-5481 TCGA-22-5489 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
       79.20        62.86       173.79       141.34        54.44        10.98 
TCGA-33-6737 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       19.76        31.50        32.84        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5241 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-39-5011 
       10.82        14.07         3.95         0.39         6.54        47.80 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5034 
       68.58        55.17        70.03         1.71         1.94        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-5668 
       15.58        35.64        17.88        18.28        13.12         8.48 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-52-7811 TCGA-52-7812 
        6.02         5.42         3.78         6.64         8.75        27.45 
TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 
        0.10         1.02         0.99         3.58        12.23        37.94 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       21.70        49.48         9.01        16.83        35.34        38.83 
TCGA-60-2720 TCGA-60-2725 TCGA-66-2734 TCGA-66-2737 TCGA-66-2765 TCGA-66-2771 
        3.16        23.64        43.10         2.01         2.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2783 TCGA-66-2788 TCGA-68-7756 TCGA-77-7138 
        3.02        19.00        24.95        22.98         6.64        11.18 
TCGA-77-7335 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 
       70.09        12.59        39.09        17.69       104.09        27.39 
TCGA-77-8145 TCGA-85-6561 TCGA-85-7697 TCGA-85-8048 TCGA-85-8049 TCGA-90-6837 
        6.97         0.79         0.33         0.85         1.97         1.35 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        2.70         4.01         2.27         3.78         7.33        10.13 

$subtype2
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
       81.07        46.52        11.34        59.51        28.34        24.92 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        6.15         2.79         3.02        46.88        99.16        70.13 
TCGA-21-1077 TCGA-21-1081 TCGA-21-1083 TCGA-22-0944 TCGA-22-4595 TCGA-22-4599 
       34.78         9.30         8.78         7.33        24.13        38.17 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       13.12        11.77        31.69        63.52        14.60        44.22 
TCGA-22-5485 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4586 TCGA-34-2596 
       30.08        82.98       114.05        97.94        14.07         2.63 
TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 TCGA-34-5240 TCGA-34-5927 TCGA-34-7107 
       61.61        28.96        50.24         7.73        22.95         1.08 
TCGA-37-4133 TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 TCGA-39-5037 TCGA-43-3394 
        7.82        74.07        44.71        60.76         0.79        11.57 
TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        7.00         1.58        66.51         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-56-7223 TCGA-56-7582 
        0.39         0.39         2.07        17.79         0.99         0.85 
TCGA-60-2698 TCGA-60-2708 TCGA-60-2713 TCGA-60-2722 TCGA-66-2742 TCGA-66-2755 
       10.22        68.45        47.87        24.10        21.07         0.92 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2777 
       20.98        25.02         1.02         2.01        23.01         2.01 
TCGA-66-2781 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
        3.98        40.01         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-77-6843 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 
       49.05         2.73        73.08        23.28        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 TCGA-77-8128 TCGA-77-8133 TCGA-77-8148 
        0.49        42.25         0.16        37.81        53.92         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-8052 
       54.41         0.33         1.12         0.59         1.61         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-90-7769 TCGA-92-7341 TCGA-92-8064 TCGA-96-7545 
        1.41         1.18         0.59         3.48         5.26        58.42 

$subtype3
TCGA-18-3410 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1080 TCGA-21-1082 
        4.80        13.02         1.61        43.76       122.43       119.80 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-22-1012 TCGA-22-4591 
       31.63        88.08        21.57        10.82        14.10        20.45 
TCGA-22-4593 TCGA-22-4601 TCGA-22-4607 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 
       35.08        34.75        19.30         0.79        11.74        18.84 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4547 TCGA-33-4582 TCGA-33-6738 TCGA-34-2609 
       56.32        16.60        43.10       103.53        26.99        31.23 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 
        5.52         4.96         0.43         8.09         7.46         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5029 TCGA-39-5031 TCGA-43-2578 TCGA-43-3920 
        0.39         3.39        24.33        27.35        18.08        18.84 
TCGA-43-5670 TCGA-43-6770 TCGA-43-7656 TCGA-43-8116 TCGA-52-7809 TCGA-56-1622 
       18.05         2.79         6.97         6.35         5.85        28.93 
TCGA-56-6545 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-60-2695 TCGA-60-2703 
        2.04         0.43         1.45         1.32        15.55        96.82 
TCGA-60-2706 TCGA-60-2710 TCGA-60-2711 TCGA-60-2719 TCGA-60-2721 TCGA-60-2723 
       82.19        55.40        29.19        30.61        26.07        22.78 
TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
        1.22        11.77        16.96         0.99         1.02         2.01 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2768 TCGA-66-2769 TCGA-66-2780 
        0.99         0.99         0.99         2.01         7.07        12.03 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 
       12.00         1.94        25.97         4.04        22.98        10.06 
TCGA-77-6842 TCGA-77-6844 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 
       29.56        75.09       106.95        46.78        15.75        82.92 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8154 TCGA-85-6560 TCGA-85-7699 TCGA-85-7843 
       11.54        26.40        35.90         0.36         0.03         1.15 
TCGA-85-7844 TCGA-85-8071 TCGA-90-7766 TCGA-90-7767 TCGA-94-7033 TCGA-94-7557 
        1.25         0.46         1.55         2.93         2.86         0.16 
TCGA-96-7544 TCGA-98-8021 
       39.88        13.58 

subtype1 subtype2 subtype3 
    0.10     0.16     0.03 
subtype1 subtype2 subtype3 
  173.79   114.05   122.43 
subtype1 subtype2 subtype3 
  17.260   14.335   12.525 
[1] "0.1 - 173.8 (17.3)" "0.2 - 114.0 (14.3)" "0.0 - 122.4 (12.5)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[289] "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[289] "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[289] "subtype1" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 37 72
  subtype2 17 83
  subtype3 26 72
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   72
  subtype2   17   83
  subtype3   26   72
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       37       17       26
  MALE         72       83       72
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
D3V7, multiclass
D3V8, multiclass
D3V9, multiclass
D3V10, binary
          cls
clus         0   1
  subtype1   4 105
  subtype2   5  95
  subtype3   2  96
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4  105
  subtype2    5   95
  subtype3    2   96
     clus
vv    subtype1 subtype2 subtype3
  NO         4        5        2
  YES      105       95       96
D3V11, binary
          cls
clus        0  1
  subtype1 12 97
  subtype2 10 90
  subtype3  7 91
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   97
  subtype2   10   90
  subtype3    7   91
     clus
vv    subtype1 subtype2 subtype3
  NO        12       10        7
  YES       97       90       91

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 35 29
  subtype2 36 24
  subtype3 24 14
subtype1 subtype2 subtype3 
      64       60       38 
subtype1 subtype2 subtype3 
      29       24       14 
$subtype1
TCGA-18-3417 TCGA-21-5784 TCGA-21-5787 TCGA-22-4605 TCGA-22-4609 TCGA-22-5481 
       24.92        29.85        10.82        32.02         9.53        79.20 
TCGA-22-5489 TCGA-33-4566 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-5232 
       62.86       173.79        10.98        19.76        26.99        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5928 TCGA-39-5011 TCGA-39-5021 
       32.68         9.04        14.07         5.52        47.80        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 
       55.17        70.03         1.71        24.33         1.94        36.39 
TCGA-39-5039 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
       17.88         8.48        18.05         6.02         5.42         3.78 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
        6.97        66.51         6.64         8.75        27.45         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7580 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        2.04         1.02         1.32        12.23        96.82        37.94 
TCGA-60-2709 TCGA-68-7756 TCGA-77-6842 TCGA-77-7138 TCGA-77-8131 TCGA-77-8136 
       49.48         6.64        29.56        11.18        12.59        39.09 
TCGA-77-8138 TCGA-77-8146 TCGA-77-8156 TCGA-85-6560 TCGA-85-7697 TCGA-85-8048 
       17.69        71.77         0.33         0.36         0.33         0.85 
TCGA-85-8049 TCGA-90-6837 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        1.97         1.35         2.70         4.01         2.27         2.86 
TCGA-94-7557 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        0.16         3.78         7.33        10.13 

$subtype2
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-5783 TCGA-21-5786 TCGA-22-4599 
       90.51         3.02        27.16        88.08        21.57        38.17 
TCGA-22-4601 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       34.75        11.77        31.69        63.52        14.60        44.22 
TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-33-4582 
       54.28        11.74        18.84        30.08        56.32       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-34-5240 TCGA-34-7107 TCGA-39-5016 TCGA-39-5019 
      141.34        14.07         7.73         1.08        74.07        44.71 
TCGA-39-5027 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-43-6770 TCGA-43-7657 
       60.76        27.35        35.64         0.79         2.79         1.58 
TCGA-46-6025 TCGA-51-6867 TCGA-52-7622 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        0.95        60.99        17.79         0.99         1.45         0.85 
TCGA-68-7755 TCGA-77-6843 TCGA-77-6845 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
        2.73        73.08        23.28        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7338 TCGA-77-8128 TCGA-77-8133 TCGA-77-8144 TCGA-77-8150 
       70.09         0.16        37.81        53.92        27.39        54.41 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7844 TCGA-85-8052 
        0.79         1.12         0.59         1.61         1.25         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-90-7769 TCGA-92-7341 TCGA-92-8064 TCGA-96-7545 
        1.41         1.18         0.59         3.48         5.26        58.42 

$subtype3
TCGA-21-5782 TCGA-22-4593 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 TCGA-22-5492 
       31.63        35.08        64.90         0.79        71.34        16.60 
TCGA-33-4587 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-37-5819 
       54.44        50.24        10.82        22.95         4.96         3.39 
TCGA-39-5035 TCGA-43-6143 TCGA-43-8116 TCGA-46-6026 TCGA-52-7809 TCGA-56-7221 
       15.58         7.00         6.35         0.59         5.85         0.99 
TCGA-56-7222 TCGA-77-6844 TCGA-77-7139 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 
        0.43        75.09        89.95       106.95        46.78        15.75 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       82.92       104.09        11.54        26.40         6.97         9.63 
TCGA-77-8154 TCGA-85-7699 TCGA-85-7843 TCGA-85-8071 TCGA-90-7766 TCGA-90-7767 
       35.90         0.03         1.15         0.46         1.55         2.93 
TCGA-96-7544 TCGA-98-8021 
       39.88        13.58 

subtype1 subtype2 subtype3 
    0.10     0.16     0.03 
subtype1 subtype2 subtype3 
  173.79   141.34   106.95 
subtype1 subtype2 subtype3 
   10.90    19.81    14.58 
[1] "0.1 - 173.8 (10.9)" "0.2 - 141.3 (19.8)" "0.0 - 107.0 (14.6)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 21 48
  subtype2 14 51
  subtype3 11 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   48
  subtype2   14   51
  subtype3   11   30
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       21       14       11
  MALE         48       51       30
D4V4, continuous
D4V5, multiclass
D4V6, multiclass
D4V7, multiclass
D4V8, multiclass
D4V9, multiclass
D4V10, binary
          cls
clus        0  1
  subtype1  4 65
  subtype2  2 63
  subtype3  3 38
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   65
  subtype2    2   63
  subtype3    3   38
     clus
vv    subtype1 subtype2 subtype3
  NO         4        2        3
  YES       65       63       38
D4V11, binary
          cls
clus        0  1
  subtype1  8 61
  subtype2  6 59
  subtype3  2 39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   61
  subtype2    6   59
  subtype3    2   39
     clus
vv    subtype1 subtype2 subtype3
  NO         8        6        2
  YES       61       59       39

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 39 15
  subtype2 39 30
  subtype3 27 27
subtype1 subtype2 subtype3 
      54       69       54 
subtype1 subtype2 subtype3 
      15       30       27 
$subtype1
TCGA-18-4721 TCGA-21-1072 TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-22-5483 
       90.51        99.16        60.89       122.43         8.78        18.84 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6738 
       62.86        82.98       173.79       103.53        14.07        26.99 
TCGA-34-2605 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-37-4133 
       28.96        50.24        10.82        22.95         4.96         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5034 
        6.81         0.39         3.39        74.07        55.17        36.39 
TCGA-43-2578 TCGA-43-6143 TCGA-43-6771 TCGA-43-7656 TCGA-43-7658 TCGA-46-6026 
       18.08         7.00         5.42         6.97        66.51         0.59 
TCGA-52-7812 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 TCGA-60-2714 TCGA-60-2716 
       27.45        68.45        49.48        29.19        16.83        38.83 
TCGA-66-2727 TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 TCGA-66-2783 TCGA-66-2785 
       16.96        20.98         1.02         2.01        24.95         1.94 
TCGA-66-2790 TCGA-66-2794 TCGA-66-2795 TCGA-77-6842 TCGA-77-6843 TCGA-77-7139 
       22.98        54.08         4.01        29.56        73.08        89.95 
TCGA-77-7141 TCGA-77-7465 TCGA-85-7698 TCGA-85-7699 TCGA-90-7767 TCGA-96-7544 
        0.49        15.75         1.61         0.03         2.93        39.88 

$subtype2
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1081 
        3.02        27.16       115.59        46.88        70.13         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-4607 TCGA-22-5471 
       29.85        21.57        10.82        19.99        19.30        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5492 
       64.90        63.52        44.22        54.28        71.34        16.60 
TCGA-33-4547 TCGA-33-4589 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       43.10        10.98        31.23        51.78        32.68         9.04 
TCGA-34-5241 TCGA-34-5928 TCGA-37-3789 TCGA-37-3792 TCGA-39-5011 TCGA-39-5019 
       14.07         5.52         0.43         0.39        47.80        44.71 
TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5035 
       68.58        70.03        60.76         1.71        24.33        15.58 
TCGA-39-5037 TCGA-43-5670 TCGA-43-6770 TCGA-46-6025 TCGA-52-7811 TCGA-56-6545 
        0.79        18.05         2.79         0.95         8.75         2.04 
TCGA-56-6546 TCGA-56-7222 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        1.02         0.43         3.58        12.23        10.22        96.82 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 TCGA-66-2768 TCGA-66-2769 
        3.16        26.07         1.22        11.77         2.01         7.07 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 TCGA-66-2791 TCGA-77-6845 
       19.00         3.98        12.00        22.98         5.03        23.28 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-85-6561 TCGA-85-6798 TCGA-85-7843 
      106.95         0.16        46.78         0.79         1.12         1.15 
TCGA-85-7844 TCGA-92-7340 TCGA-94-7033 
        1.25         2.70         2.86 

$subtype3
TCGA-21-1078 TCGA-21-1079 TCGA-21-1082 TCGA-21-5782 TCGA-22-1000 TCGA-22-1011 
       15.55        31.69       119.80        31.63        14.93         1.74 
TCGA-22-4591 TCGA-22-4596 TCGA-22-4605 TCGA-22-4609 TCGA-22-5474 TCGA-22-5478 
       20.45         0.56        32.02         9.53        14.60         0.79 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-33-6737 TCGA-34-2596 TCGA-34-2604 
       11.74        30.08        56.32        19.76         2.63        31.50 
TCGA-34-2608 TCGA-34-7107 TCGA-37-4129 TCGA-39-5030 TCGA-39-5031 TCGA-43-2581 
       32.84         1.08         6.54         1.94        27.35        13.12 
TCGA-43-3394 TCGA-43-5668 TCGA-51-6867 TCGA-56-5897 TCGA-56-7221 TCGA-60-2695 
       11.57         8.48        60.99         0.10         0.99        15.55 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2719 
       37.94        82.19        55.40         9.01        47.87        30.61 
TCGA-60-2725 TCGA-66-2737 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2800 
       23.64         2.01        23.01         3.02         2.01        49.05 
TCGA-68-7756 TCGA-77-6844 TCGA-77-7142 TCGA-77-7335 TCGA-85-6560 TCGA-85-7696 
        6.64        75.09        42.25        70.09         0.36         0.59 
TCGA-85-7697 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-94-7557 TCGA-98-7454 
        0.33         1.35         1.55         0.59         0.16         3.78 

subtype1 subtype2 subtype3 
    0.03     0.16     0.10 
subtype1 subtype2 subtype3 
  173.79   115.59   119.80 
subtype1 subtype2 subtype3 
  22.965   14.070   13.860 
[1] "0.0 - 173.8 (23.0)" "0.2 - 115.6 (14.1)" "0.1 - 119.8 (13.9)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 11 46
  subtype2 17 55
  subtype3 20 41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   46
  subtype2   17   55
  subtype3   20   41
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       11       17       20
  MALE         46       55       41
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
D5V7, multiclass
D5V8, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       51       66       55
  MX        6        4        5
D5V9, multiclass
D5V10, binary
          cls
clus        0  1
  subtype1  3 54
  subtype2  2 70
  subtype3  3 58
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   54
  subtype2    2   70
  subtype3    3   58
     clus
vv    subtype1 subtype2 subtype3
  NO         3        2        3
  YES       54       70       58
D5V11, binary
          cls
clus        0  1
  subtype1  8 49
  subtype2 10 62
  subtype3  5 56
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   49
  subtype2   10   62
  subtype3    5   56
     clus
vv    subtype1 subtype2 subtype3
  NO         8       10        5
  YES       49       62       56

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 26 18
  subtype2 27 15
  subtype3 33 19
  subtype4 19 20
subtype1 subtype2 subtype3 subtype4 
      44       42       52       39 
subtype1 subtype2 subtype3 subtype4 
      18       15       19       20 
$subtype1
TCGA-21-1070 TCGA-21-1071 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 TCGA-22-0940 
      115.59        46.88         9.30        31.63        21.57        19.99 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5479 TCGA-22-5492 TCGA-33-4547 TCGA-34-5232 
       19.30        31.69        54.28        16.60        43.10        51.78 
TCGA-34-5236 TCGA-34-5928 TCGA-37-3789 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        9.04         5.52         0.43        47.80        44.71        68.58 
TCGA-43-5670 TCGA-46-6025 TCGA-56-6545 TCGA-56-7222 TCGA-60-2698 TCGA-60-2703 
       18.05         0.95         2.04         0.43        10.22        96.82 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 TCGA-66-2768 TCGA-66-2769 
        3.16        26.07         1.22        11.77         2.01         7.07 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 TCGA-66-2791 TCGA-77-6845 
       19.00         3.98        12.00        22.98         5.03        23.28 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
      106.95         0.16        46.78         0.36         0.79         1.12 
TCGA-85-7843 TCGA-92-7340 
        1.15         2.70 

$subtype2
TCGA-21-1072 TCGA-21-1075 TCGA-21-1078 TCGA-21-1079 TCGA-22-4591 TCGA-22-4605 
       99.16        70.13        15.55        31.69        20.45        32.02 
TCGA-22-4609 TCGA-22-5491 TCGA-33-4532 TCGA-33-4586 TCGA-33-6738 TCGA-34-2605 
        9.53        56.32        82.98        14.07        26.99        28.96 
TCGA-34-5929 TCGA-37-4129 TCGA-39-5022 TCGA-39-5031 TCGA-43-2578 TCGA-43-3394 
        4.96         6.54        55.17        27.35        18.08        11.57 
TCGA-43-5668 TCGA-43-6770 TCGA-46-6026 TCGA-51-6867 TCGA-60-2704 TCGA-60-2708 
        8.48         2.79         0.59        60.99        37.94        68.45 
TCGA-60-2710 TCGA-60-2713 TCGA-60-2719 TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 
       55.40        47.87        30.61        20.98         1.02         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2783 TCGA-66-2790 TCGA-66-2800 
       23.01         3.02         2.01        24.95        22.98        49.05 
TCGA-77-6844 TCGA-77-7142 TCGA-85-7696 TCGA-85-7698 TCGA-90-7766 TCGA-94-7557 
       75.09        42.25         0.59         1.61         1.55         0.16 

$subtype3
TCGA-18-4721 TCGA-18-5592 TCGA-21-1076 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 
       90.51         3.02        60.89       122.43       119.80         8.78 
TCGA-21-5787 TCGA-22-1000 TCGA-22-5480 TCGA-22-5483 TCGA-22-5489 TCGA-33-4566 
       10.82        14.93        71.34        18.84        62.86       173.79 
TCGA-33-4582 TCGA-33-4589 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 TCGA-37-3792 
      103.53        10.98        32.84        50.24        10.82         0.39 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5024 
        7.82         6.81         0.39         3.39        74.07        70.03 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-43-2581 TCGA-43-6143 
       24.33         1.94        36.39        15.58        13.12         7.00 
TCGA-43-6771 TCGA-43-7656 TCGA-43-7658 TCGA-52-7812 TCGA-60-2695 TCGA-60-2709 
        5.42         6.97        66.51        27.45        15.55        49.48 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2716 TCGA-66-2785 TCGA-66-2794 
       29.19         9.01        16.83        38.83         1.94        54.08 
TCGA-66-2795 TCGA-77-6842 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 
        4.01        29.56        73.08        89.95         0.49        70.09 
TCGA-77-7465 TCGA-85-7699 TCGA-90-7767 TCGA-96-7544 
       15.75         0.03         2.93        39.88 

$subtype4
TCGA-18-5595 TCGA-21-5784 TCGA-22-1011 TCGA-22-4596 TCGA-22-5472 TCGA-22-5473 
       27.16        29.85         1.74         0.56        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-33-6737 
       14.60        44.22         0.79        11.74        30.08        19.76 
TCGA-34-2596 TCGA-34-2604 TCGA-34-2609 TCGA-34-5234 TCGA-34-5241 TCGA-34-5927 
        2.63        31.50        31.23        32.68        14.07        22.95 
TCGA-34-7107 TCGA-39-5027 TCGA-39-5028 TCGA-39-5037 TCGA-52-7811 TCGA-56-5897 
        1.08        60.76         1.71         0.79         8.75         0.10 
TCGA-56-6546 TCGA-56-7221 TCGA-60-2696 TCGA-60-2697 TCGA-60-2706 TCGA-60-2725 
        1.02         0.99         3.58        12.23        82.19        23.64 
TCGA-66-2727 TCGA-66-2737 TCGA-68-7756 TCGA-85-7697 TCGA-85-7844 TCGA-90-6837 
       16.96         2.01         6.64         0.33         1.25         1.35 
TCGA-90-7769 TCGA-94-7033 TCGA-98-7454 
        0.59         2.86         3.78 

subtype1 subtype2 subtype3 subtype4 
    0.16     0.16     0.03     0.10 
subtype1 subtype2 subtype3 subtype4 
  115.59    99.16   173.79    82.19 
subtype1 subtype2 subtype3 subtype4 
  14.300   22.995   17.835    8.750 
[1] "0.2 - 115.6 (14.3)" "0.2 - 99.2 (23.0)"  "0.0 - 173.8 (17.8)"
[4] "0.1 - 82.2 (8.8)"  
  [1] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
 [37] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
 [61] "subtype1" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[103] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[109] "subtype1" "subtype2" "subtype4" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype2" "subtype4" "subtype2" "subtype3" "subtype1" "subtype4"
[169] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype2" "subtype3" "subtype4"
  [1] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
 [37] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
 [61] "subtype1" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[103] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[109] "subtype1" "subtype2" "subtype4" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype2" "subtype4" "subtype2" "subtype3" "subtype1" "subtype4"
[169] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype2" "subtype3" "subtype4"
  [1] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
 [37] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
 [61] "subtype1" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[103] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[109] "subtype1" "subtype2" "subtype4" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype2" "subtype4" "subtype2" "subtype3" "subtype1" "subtype4"
[169] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype2" "subtype3" "subtype4"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 10 37
  subtype2 14 32
  subtype3 15 41
  subtype4  9 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   37
  subtype2   14   32
  subtype3   15   41
  subtype4    9   32
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       10       14       15        9
  MALE         37       32       41       32
D6V4, continuous
D6V5, multiclass
D6V6, multiclass
D6V7, multiclass
D6V8, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       44       43       51       34
  MX        1        3        5        6
D6V9, multiclass
D6V10, binary
          cls
clus        0  1
  subtype1  1 46
  subtype2  3 43
  subtype3  3 53
  subtype4  1 40
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   46
  subtype2    3   43
  subtype3    3   53
  subtype4    1   40
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        3        3        1
  YES       46       43       53       40
D6V11, binary
          cls
clus        0  1
  subtype1  6 41
  subtype2  5 41
  subtype3  7 49
  subtype4  5 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   41
  subtype2    5   41
  subtype3    7   49
  subtype4    5   36
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         6        5        7        5
  YES       41       41       49       36

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 14  6
  subtype2  8  9
  subtype3 32 20
  subtype4 20 17
  subtype5 18 14
  subtype6 21 13
  subtype7  1  2
  subtype8  5  4
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
      20       17       52       37       32       34        3        9 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
       6        9       20       17       14       13        2        4 
$subtype1
TCGA-18-3406 TCGA-18-3417 TCGA-21-1070 TCGA-21-1079 TCGA-22-5482 TCGA-37-3783 
       12.16        24.92       115.59        31.69        11.74         3.95 
TCGA-37-3789 TCGA-43-6647 TCGA-43-6771 TCGA-56-5897 TCGA-60-2707 TCGA-60-2720 
        0.43         6.02         5.42         0.10        21.70         3.16 
TCGA-66-2734 TCGA-66-2759 TCGA-66-2765 TCGA-66-2768 TCGA-66-2780 TCGA-66-2782 
       43.10        25.02         2.01         2.01        12.03        12.00 
TCGA-66-2788 TCGA-90-6837 
       22.98         1.35 

$subtype2
TCGA-18-3407 TCGA-21-1076 TCGA-21-1081 TCGA-22-0944 TCGA-22-1012 TCGA-22-4595 
        4.47        60.89         9.30         7.33        14.10        24.13 
TCGA-22-4604 TCGA-22-5471 TCGA-34-5236 TCGA-34-7107 TCGA-39-5019 TCGA-39-5031 
       13.12        31.69         9.04         1.08        44.71        27.35 
TCGA-60-2710 TCGA-60-2715 TCGA-66-2767 TCGA-66-2777 TCGA-85-6561 
       55.40        35.34         2.01         2.01         0.79 

$subtype3
TCGA-18-3408 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-4086 TCGA-18-4721 
       81.07        46.52        59.51        28.34         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
        3.02        27.16        46.88        99.16        70.13        34.78 
TCGA-22-4601 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5485 TCGA-33-4583 
       34.75        63.52        14.60        44.22        30.08       141.34 
TCGA-33-4586 TCGA-34-2596 TCGA-34-5240 TCGA-37-4133 TCGA-39-5016 TCGA-39-5021 
       14.07         2.63         7.73         7.82        74.07        68.58 
TCGA-39-5027 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-46-3768 
       60.76        35.64         0.79        11.57         2.79         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-60-2709 TCGA-60-2722 
        0.95         0.39         0.39         2.07        49.48        24.10 
TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 TCGA-66-2766 TCGA-66-2770 
       22.78        16.96         2.01        20.98         1.02        23.01 
TCGA-66-2773 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
        3.02        40.01         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-77-6843 TCGA-77-6845 TCGA-85-6798 
       49.05        73.08        23.28         1.12 

$subtype4
TCGA-18-3409 TCGA-18-3410 TCGA-18-4083 TCGA-21-5782 TCGA-21-5786 TCGA-22-4593 
       79.46         4.80         6.15        31.63        21.57        35.08 
TCGA-22-4599 TCGA-22-4613 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5489 
       38.17        11.77         0.79        71.34        79.20        62.86 
TCGA-33-4533 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
      114.05        50.24        10.82        22.95         5.52         4.96 
TCGA-37-4129 TCGA-39-5030 TCGA-43-3920 TCGA-46-6026 TCGA-56-6545 TCGA-60-2695 
        6.54         1.94        18.84         0.59         2.04        15.55 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2725 TCGA-66-2744 
       68.45        29.19         9.01        47.87        23.64         0.99 
TCGA-66-2755 TCGA-66-2769 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-77-6842 
        0.92         7.07         4.04        22.98        10.06        29.56 
TCGA-85-6560 
        0.36 

$subtype5
TCGA-18-3412 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1080 TCGA-21-1082 
       11.34        13.02         1.61        43.76       122.43       119.80 
TCGA-21-5784 TCGA-22-1011 TCGA-22-4591 TCGA-22-4607 TCGA-22-5472 TCGA-22-5491 
       29.85         1.74        20.45        19.30        64.90        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 TCGA-34-2600 TCGA-34-5241 
       16.60        82.98        43.10       103.53        61.61        14.07 
TCGA-39-5024 TCGA-39-5039 TCGA-56-1622 TCGA-60-2696 TCGA-60-2716 TCGA-60-2719 
       70.03        17.88        28.93         3.58        38.83        30.61 
TCGA-60-2721 TCGA-66-2742 TCGA-66-2763 TCGA-66-2771 TCGA-66-2778 TCGA-66-2781 
       26.07        21.07         0.99        19.00        19.00         3.98 
TCGA-77-6844 TCGA-94-7033 
       75.09         2.86 

$subtype6
TCGA-21-1078 TCGA-21-1083 TCGA-21-5787 TCGA-22-0940 TCGA-22-1017 TCGA-22-4594 
       15.55         8.78        10.82        19.99        48.82        48.33 
TCGA-22-5483 TCGA-33-4566 TCGA-33-6737 TCGA-33-6738 TCGA-37-3792 TCGA-37-4130 
       18.84       173.79        19.76        26.99         0.39         8.09 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5029 
        7.46         6.81         0.39         3.39        47.80        24.33 
TCGA-39-5034 TCGA-39-5035 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 
       36.39        15.58        18.08        13.12         8.48         7.00 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2706 TCGA-60-2714 TCGA-60-2724 TCGA-60-2726 
        1.02        10.22        82.19        16.83         1.22        11.77 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2785 
        2.01         0.99         0.99         1.94 

$subtype7
TCGA-22-1002 TCGA-22-1016 TCGA-66-2753 
        4.31        27.02         1.02 

$subtype8
TCGA-22-4596 TCGA-22-5479 TCGA-33-4538 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
        0.56        54.28        97.94        32.84        51.78        32.68 
TCGA-39-5028 TCGA-66-2783 TCGA-66-2786 
        1.71        24.95        25.97 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
    0.10     0.79     0.39     0.36     0.99     0.39     1.02     0.56 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  115.59    60.89   141.34   114.05   122.43   173.79    27.02    97.94 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  11.870   13.120   23.690   15.550   23.570   11.295    4.310   32.680 
[1] "0.1 - 115.6 (11.9)" "0.8 - 60.9 (13.1)"  "0.4 - 141.3 (23.7)"
[4] "0.4 - 114.0 (15.6)" "1.0 - 122.4 (23.6)" "0.4 - 173.8 (11.3)"
[7] "1.0 - 27.0 (4.3)"   "0.6 - 97.9 (32.7)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1  5 17
  subtype2  4 16
  subtype3 10 45
  subtype4 17 23
  subtype5  8 26
  subtype6 10 26
  subtype7  1  3
  subtype8  4  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   17
  subtype2    4   16
  subtype3   10   45
  subtype4   17   23
  subtype5    8   26
  subtype6   10   26
  subtype7    1    3
  subtype8    4    5
D7V4, continuous
[1] "Remove cluster labels:" "subtype8"              
clus
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype8 
       3        4        7       11        7       10        2 
 [1] "subtype1" "subtype2" "subtype4" "subtype5" "subtype5" "subtype4"
 [7] "subtype6" "subtype6" "subtype5" "subtype4" "subtype6" "subtype2"
[13] "subtype4" "subtype3" "subtype2" "subtype4" "subtype5" "subtype3"
[19] "subtype3" "subtype3" "subtype4" "subtype4" "subtype1" "subtype6"
[25] "subtype3" "subtype4" "subtype5" "subtype5" "subtype4" "subtype6"
[31] "subtype6" "subtype3" "subtype6" "subtype6" "subtype5" "subtype6"
[37] "subtype4" "subtype2" "subtype4" "subtype6" "subtype1" "subtype3"
D7V5, multiclass
D7V6, multiclass
D7V7, multiclass
D7V8, multiclass
D7V9, multiclass
D7V10, binary
          cls
clus        0  1
  subtype1  0 22
  subtype2  2 18
  subtype3  0 55
  subtype4  2 38
  subtype5  1 33
  subtype6  1 35
  subtype7  0  4
  subtype8  0  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   22
  subtype2    2   18
  subtype3    0   55
  subtype4    2   38
  subtype5    1   33
  subtype6    1   35
  subtype7    0    4
  subtype8    0    9
D7V11, binary
          cls
clus        0  1
  subtype1  1 21
  subtype2  2 18
  subtype3  4 51
  subtype4  2 38
  subtype5  3 31
  subtype6  8 28
  subtype7  0  4
  subtype8  1  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   21
  subtype2    2   18
  subtype3    4   51
  subtype4    2   38
  subtype5    3   31
  subtype6    8   28
  subtype7    0    4
  subtype8    1    8

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 35 25
  subtype2 40 28
  subtype3 44 32
subtype1 subtype2 subtype3 
      60       68       76 
subtype1 subtype2 subtype3 
      25       28       32 
$subtype1
TCGA-18-3409 TCGA-18-3410 TCGA-18-3417 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 
       79.46         4.80        24.92         8.78        21.57        10.82 
TCGA-22-0940 TCGA-22-1002 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 
       19.99         4.31        27.02        48.82        48.33         0.56 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 TCGA-33-4533 
        0.79        71.34        79.20        18.84        62.86       114.05 
TCGA-33-4566 TCGA-33-6737 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
      173.79        19.76        10.82        22.95         5.52         4.96 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         8.09         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-43-2578 
        3.39        47.80         1.94        36.39        15.58        18.08 
TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-56-6545 TCGA-56-6546 
       13.12         8.48         7.00         6.02         2.04         1.02 
TCGA-60-2695 TCGA-60-2706 TCGA-60-2712 TCGA-60-2714 TCGA-60-2720 TCGA-60-2726 
       15.55        82.19         9.01        16.83         3.16        11.77 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2769 
        0.99         2.01         0.92         0.99         0.99         7.07 
TCGA-66-2785 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-77-6842 TCGA-85-6560 
        1.94         4.04        22.98        10.06        29.56         0.36 

$subtype2
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-22-4599 TCGA-22-4601 
       99.16        70.13        60.89        34.78        38.17        34.75 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       13.12        11.77        31.69        63.52        14.60        44.22 
TCGA-22-5482 TCGA-22-5485 TCGA-33-4532 TCGA-33-4583 TCGA-33-4586 TCGA-33-6738 
       11.74        30.08        82.98       141.34        14.07        26.99 
TCGA-34-2596 TCGA-34-5240 TCGA-34-7107 TCGA-37-4133 TCGA-39-5016 TCGA-39-5021 
        2.63         7.73         1.08         7.82        74.07        68.58 
TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
       35.64         0.79        11.57         2.79         9.96         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        0.39         0.39         2.07        49.48        55.40        29.19 
TCGA-60-2713 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 
       47.87        24.10        22.78        16.96         2.01        20.98 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2787 
       25.02         1.02         2.01        23.01         3.02        40.01 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-66-2800 TCGA-77-6843 TCGA-77-6845 
        5.03        30.02         4.01        49.05        73.08        23.28 
TCGA-85-6561 TCGA-85-6798 
        0.79         1.12 

$subtype3
TCGA-18-3406 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1070 TCGA-21-1078 
       12.16        13.02         1.61        43.76       115.59        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 
       31.69       122.43         9.30       119.80        31.63        29.85 
TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        7.33         1.74        14.10        20.45        35.08        24.13 
TCGA-22-4607 TCGA-22-5472 TCGA-22-5479 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 
       19.30        64.90        54.28        56.32        16.60        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       43.10       103.53        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 TCGA-39-5019 
       32.68         9.04        14.07         3.95         0.43        44.71 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5039 
       70.03        60.76         1.71        24.33        27.35        17.88 
TCGA-43-3920 TCGA-43-6771 TCGA-46-6026 TCGA-56-1622 TCGA-56-5897 TCGA-60-2696 
       18.84         5.42         0.59        28.93         0.10         3.58 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       10.22        21.70        68.45        35.34        38.83        30.61 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 TCGA-66-2742 TCGA-66-2753 
       26.07         1.22        23.64        43.10        21.07         1.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        0.99         2.01         2.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        12.00        24.95        25.97        22.98 
TCGA-66-2794 TCGA-77-6844 TCGA-90-6837 TCGA-94-7033 
       54.08        75.09         1.35         2.86 

subtype1 subtype2 subtype3 
    0.36     0.39     0.10 
subtype1 subtype2 subtype3 
  173.79   141.34   122.43 
subtype1 subtype2 subtype3 
   8.895   23.145   22.340 
[1] "0.4 - 173.8 (8.9)"  "0.4 - 141.3 (23.1)" "0.1 - 122.4 (22.3)"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 25 40
  subtype2 15 59
  subtype3 19 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   40
  subtype2   15   59
  subtype3   19   62
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       25       15       19
  MALE         40       59       62
D8V4, continuous
D8V5, multiclass
D8V6, multiclass
D8V7, multiclass
D8V8, multiclass
D8V9, multiclass
D8V10, binary
          cls
clus        0  1
  subtype1  1 64
  subtype2  1 73
  subtype3  4 77
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   64
  subtype2    1   73
  subtype3    4   77
     clus
vv    subtype1 subtype2 subtype3
  NO         1        1        4
  YES       64       73       77
D8V11, binary
          cls
clus        0  1
  subtype1  7 58
  subtype2  7 67
  subtype3  7 74
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7   58
  subtype2    7   67
  subtype3    7   74
     clus
vv    subtype1 subtype2 subtype3
  NO         7        7        7
  YES       58       67       74

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 78 57
  subtype2 65 36
  subtype3 18 12
subtype1 subtype2 subtype3 
     135      101       30 
subtype1 subtype2 subtype3 
      57       36       12 
$subtype1
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
        2.79        90.51        70.13        60.89        15.55        31.69 
TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
      122.43         8.78        31.63        29.85        21.57        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4594 
       19.99         7.33         1.74        14.10        20.45        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13         0.56        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       31.69        63.52        14.60         0.79        71.34        79.20 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       43.10       173.79       103.53       141.34        14.07        10.98 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2609 TCGA-34-5241 TCGA-37-3789 TCGA-37-3792 
       31.50        28.96        31.23        14.07         0.43         0.39 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        8.09         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5021 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       68.58         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-46-3768 TCGA-51-4079 
       13.12        11.57        18.84         8.48         9.96         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 
        2.07        28.93         0.10        15.55         3.58        10.22 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       82.19        68.45        29.19         9.01        47.87        16.83 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
        1.22        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        1.02         2.01         0.92        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 
        2.01         1.02         2.01         2.01        19.00         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2795 TCGA-77-8139 TCGA-77-8144 
        4.01       104.09        27.39 

$subtype2
TCGA-21-5783 TCGA-22-4593 TCGA-22-4605 TCGA-22-5479 TCGA-22-5483 TCGA-33-4587 
       88.08        35.08        32.02        54.28        18.84        54.44 
TCGA-33-6737 TCGA-33-6738 TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 
       19.76        26.99        50.24        51.78         9.04        10.82 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-39-5019 TCGA-39-5022 
       22.95         5.52         4.96         1.08        44.71        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 
       70.03        60.76        18.05         7.00         6.02         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-6025 TCGA-46-6026 TCGA-51-6867 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.95         0.59        60.99         5.85         8.75        27.45 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-68-7755 TCGA-68-7756 
        1.32        12.23        96.82        37.94         2.73         6.64 
TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       29.56        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 
        0.49        42.25        70.09       106.95        46.78        15.75 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8146 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40         6.97        71.77         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
       35.90         0.33         0.36         0.79         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.15         0.85         1.97         0.53 
TCGA-85-8070 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        1.41         1.35         1.55         2.93         0.59         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       39.88        58.42         3.78        13.58         7.33 

$subtype3
TCGA-21-1072 TCGA-21-1077 TCGA-22-4609 TCGA-22-5472 TCGA-22-5477 TCGA-22-5482 
       99.16        34.78         9.53        64.90        44.22        11.74 
TCGA-22-5485 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5234 TCGA-34-5240 
       30.08         2.63        61.61        32.84        32.68         7.73 
TCGA-43-6770 TCGA-51-4080 TCGA-52-7622 TCGA-56-7582 TCGA-60-2709 TCGA-60-2710 
        2.79         0.39        17.79         0.85        49.48        55.40 
TCGA-60-2725 TCGA-66-2770 TCGA-66-2787 TCGA-66-2794 TCGA-66-2800 TCGA-77-6843 
       23.64        23.01        40.01        54.08        49.05        73.08 
TCGA-77-7338 TCGA-85-6798 TCGA-85-7844 TCGA-85-8071 TCGA-85-8072 TCGA-98-8023 
        0.16         1.12         1.25         0.46         1.18        10.13 

subtype1 subtype2 subtype3 
    0.10     0.03     0.16 
subtype1 subtype2 subtype3 
  173.79   106.95    99.16 
subtype1 subtype2 subtype3 
  17.880    8.750   23.325 
[1] "0.1 - 173.8 (17.9)" "0.0 - 107.0 (8.8)"  "0.2 - 99.2 (23.3)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype3"
D9V2, continuous
D9V3, binary
          cls
clus         0   1
  subtype1  41 100
  subtype2  27  83
  subtype3   7  24
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   41  100
  subtype2   27   83
  subtype3    7   24
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       41       27        7
  MALE        100       83       24
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
D9V7, multiclass
D9V8, multiclass
D9V9, multiclass
D9V10, binary
          cls
clus         0   1
  subtype1   4 137
  subtype2   6 104
  subtype3   0  31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4  137
  subtype2    6  104
  subtype3    0   31
     clus
vv    subtype1 subtype2 subtype3
  NO         4        6        0
  YES      137      104       31
D9V11, binary
          cls
clus         0   1
  subtype1  14 127
  subtype2  13  97
  subtype3   1  30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14  127
  subtype2   13   97
  subtype3    1   30
     clus
vv    subtype1 subtype2 subtype3
  NO        14       13        1
  YES      127       97       30

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 27 24
  subtype2 32 20
  subtype3 54 26
  subtype4 48 35
subtype1 subtype2 subtype3 subtype4 
      51       52       80       83 
subtype1 subtype2 subtype3 subtype4 
      24       20       26       35 
$subtype1
TCGA-21-1079 TCGA-21-5782 TCGA-21-5783 TCGA-21-5787 TCGA-22-4593 TCGA-22-4595 
       31.69        31.63        88.08        10.82        35.08        24.13 
TCGA-22-5478 TCGA-22-5483 TCGA-33-4533 TCGA-34-2600 TCGA-34-5236 TCGA-34-5927 
        0.79        18.84       114.05        61.61         9.04        22.95 
TCGA-34-5928 TCGA-39-5024 TCGA-39-5027 TCGA-39-5031 TCGA-43-5670 TCGA-43-6143 
        5.52        70.03        60.76        27.35        18.05         7.00 
TCGA-43-8115 TCGA-43-8116 TCGA-51-6867 TCGA-52-7809 TCGA-56-6545 TCGA-56-7222 
        6.64         6.35        60.99         5.85         2.04         0.43 
TCGA-56-7223 TCGA-60-2703 TCGA-66-2793 TCGA-68-7755 TCGA-77-6842 TCGA-77-6844 
        0.99        96.82        10.06         2.73        29.56        75.09 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       23.28        89.95        20.78        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8156 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-90-7766 TCGA-92-8063 
        0.33         1.15         0.85         1.97         1.55         4.01 
TCGA-92-8065 TCGA-94-7557 TCGA-98-8022 
        2.27         0.16         7.33 

$subtype2
TCGA-18-3406 TCGA-18-3408 TCGA-18-4086 TCGA-18-4721 TCGA-21-1072 TCGA-21-1076 
       12.16        81.07         2.79        90.51        99.16        60.89 
TCGA-21-1077 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 
       34.78        32.02         9.53        31.69        63.52        44.22 
TCGA-22-5482 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2605 
       11.74       141.34        14.07        10.98         2.63        28.96 
TCGA-34-5231 TCGA-34-5240 TCGA-39-5022 TCGA-43-6770 TCGA-46-6026 TCGA-51-4079 
       50.24         7.73        55.17         2.79         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-56-7221 TCGA-56-7582 TCGA-60-2704 
        0.39         2.07        17.79         0.99         0.85        37.94 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2722 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 
       49.48        55.40        24.10        16.96         2.01        20.98 
TCGA-66-2770 TCGA-66-2787 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-77-6843 
       23.01        40.01         5.03        54.08         4.01        73.08 
TCGA-77-7141 TCGA-77-7338 TCGA-85-6798 TCGA-85-7696 TCGA-85-7844 TCGA-85-8052 
        0.49         0.16         1.12         0.59         1.25         0.53 
TCGA-85-8071 TCGA-85-8072 TCGA-90-7769 TCGA-98-8021 
        0.46         1.18         0.59        13.58 

$subtype3
TCGA-18-3407 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
        4.47        46.52        13.02        28.34         1.61        43.76 
TCGA-21-1075 TCGA-21-1080 TCGA-21-1083 TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 
       70.13       122.43         8.78        19.99         7.33        14.10 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4613 TCGA-22-5474 TCGA-22-5481 TCGA-22-5485 
       20.45        48.33        11.77        14.60        79.20        30.08 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 TCGA-33-4587 TCGA-34-2604 
       16.60        82.98        43.10       103.53        54.44        31.50 
TCGA-34-2609 TCGA-34-5241 TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 
       31.23        14.07         0.43         0.39         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 TCGA-39-5029 TCGA-39-5034 
        0.39         3.39        47.80        68.58        24.33        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-7658 TCGA-46-3768 
       13.12        11.57        18.84         8.48        66.51         9.96 
TCGA-56-5897 TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2708 
        0.10        15.55         3.58        10.22        82.19        68.45 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19        47.87        38.83        30.61         3.16        26.07 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 
       22.78         1.22        23.64        43.10         0.99         1.02 
TCGA-66-2754 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2771 TCGA-66-2777 
        2.01         0.99         2.01         2.01        19.00         2.01 
TCGA-66-2782 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 
       12.00        25.97        22.98         4.04        22.98        30.02 
TCGA-66-2800 TCGA-85-8070 
       49.05         1.41 

$subtype4
TCGA-18-3410 TCGA-18-3412 TCGA-18-3415 TCGA-18-3417 TCGA-21-1078 TCGA-21-5784 
        4.80        11.34        59.51        24.92        15.55        29.85 
TCGA-21-5786 TCGA-22-1011 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       21.57         1.74         0.56        34.75        13.12        19.30 
TCGA-22-5472 TCGA-22-5479 TCGA-22-5480 TCGA-22-5489 TCGA-22-5491 TCGA-33-4538 
       64.90        54.28        71.34        62.86        56.32        97.94 
TCGA-33-4566 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
      173.79        19.76        26.99        32.84        51.78        32.68 
TCGA-34-5239 TCGA-34-5929 TCGA-34-7107 TCGA-37-4130 TCGA-39-5019 TCGA-39-5028 
       10.82         4.96         1.08         8.09        44.71         1.71 
TCGA-39-5030 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        1.94         6.02         5.42         3.78         6.97         1.58 
TCGA-46-6025 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6546 TCGA-56-7579 
        0.95         8.75        27.45        28.93         1.02         1.45 
TCGA-56-7580 TCGA-60-2697 TCGA-60-2712 TCGA-60-2714 TCGA-66-2742 TCGA-66-2755 
        1.32        12.23         9.01        16.83        21.07         0.92 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2768 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
       25.02         1.02         2.01        12.03         3.98        24.95 
TCGA-66-2785 TCGA-68-7756 TCGA-77-7138 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
        1.94         6.64        11.18        42.25        70.09       106.95 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78        15.75        37.81        82.92        12.59        53.92 
TCGA-77-8146 TCGA-77-8154 TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 
       71.77        35.90         0.36         0.79         0.33         1.61 
TCGA-85-7699 TCGA-90-6837 TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
        0.03         1.35         2.93         2.70         3.48         5.26 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8023 
        2.86        39.88        58.42         3.78        10.13 

subtype1 subtype2 subtype3 subtype4 
    0.16     0.16     0.10     0.03 
subtype1 subtype2 subtype3 subtype4 
  114.05   141.34   122.43   173.79 
subtype1 subtype2 subtype3 subtype4 
   17.69    12.87    18.18    12.03 
[1] "0.2 - 114.0 (17.7)" "0.2 - 141.3 (12.9)" "0.1 - 122.4 (18.2)"
[4] "0.0 - 173.8 (12.0)"
  [1] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [25] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
 [43] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[139] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype4"
[145] "subtype4" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[187] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[211] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype1"
[235] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
[241] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[253] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[259] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[265] "subtype1" "subtype4"
  [1] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [25] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
 [43] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[139] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype4"
[145] "subtype4" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[187] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[211] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype1"
[235] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
[241] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[253] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[259] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[265] "subtype1" "subtype4"
  [1] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [25] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
 [43] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[139] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype4"
[145] "subtype4" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[187] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[211] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype1"
[235] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
[241] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[253] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[259] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[265] "subtype1" "subtype4"
D10V2, continuous
D10V3, binary
          cls
clus        0  1
  subtype1 17 35
  subtype2 12 42
  subtype3 29 56
  subtype4 17 74
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   35
  subtype2   12   42
  subtype3   29   56
  subtype4   17   74
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       17       12       29       17
  MALE         35       42       56       74
D10V4, continuous
D10V5, multiclass
D10V6, multiclass
D10V7, multiclass
D10V8, multiclass
D10V9, multiclass
D10V10, binary
          cls
clus        0  1
  subtype1  5 47
  subtype2  3 51
  subtype3  1 84
  subtype4  1 90
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   47
  subtype2    3   51
  subtype3    1   84
  subtype4    1   90
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        3        1        1
  YES       47       51       84       90
D10V11, binary
          cls
clus        0  1
  subtype1  5 47
  subtype2  5 49
  subtype3  9 76
  subtype4  9 82
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   47
  subtype2    5   49
  subtype3    9   76
  subtype4    9   82
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        5        9        9
  YES       47       49       76       82
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
